Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.06595 * 2 1 4 4 C 1.38223 * 119.62447 * 65.79361 * 3 2 1 5 5 C 1.38627 * 119.16672 * 179.75426 * 4 3 2 6 6 C 1.38678 * 118.41394 * 0.50972 * 5 4 3 7 7 C 1.38175 * 119.16416 * 359.73149 * 6 5 4 8 8 N 1.31862 * 119.61457 * 246.06656 * 3 2 1 9 9 N 1.47895 * 109.91875 * 238.78646 * 2 1 3 10 10 C 1.48530 * 105.82373 * 265.98340 * 9 2 1 11 11 C 1.54939 * 103.22320 * 320.79038 * 10 9 2 12 12 C 1.53998 * 109.91051 * 121.19737 * 2 1 3 13 13 H 1.08999 * 110.39407 * 237.08459 * 12 2 1 14 14 C 1.50693 * 110.31193 * 359.21483 * 12 2 1 15 15 H 1.07996 * 119.99956 * 50.73181 * 14 12 2 16 16 C 1.37884 * 119.99840 * 231.00211 * 14 12 2 17 17 N 1.31508 * 119.99845 * 184.30310 * 16 14 12 18 18 Si 1.86793 * 119.99986 * 4.31072 * 16 14 12 19 19 H 1.48495 * 109.47509 * 84.64047 * 18 16 14 20 20 H 1.48496 * 109.47053 * 204.64476 * 18 16 14 21 21 H 1.48504 * 109.47089 * 324.64162 * 18 16 14 22 22 H 1.09005 * 109.47562 * 298.80392 * 1 2 3 23 23 H 1.09003 * 109.46714 * 58.79773 * 1 2 3 24 24 H 1.08992 * 109.47310 * 178.79724 * 1 2 3 25 25 H 1.08003 * 120.41553 * 359.97438 * 4 3 2 26 26 H 1.07992 * 120.79342 * 180.22192 * 5 4 3 27 27 H 1.08007 * 120.41460 * 179.75338 * 6 5 4 28 28 H 1.08005 * 119.61701 * 179.97438 * 7 6 5 29 29 H 1.00904 * 110.99722 * 145.46458 * 9 2 1 30 30 H 1.08997 * 110.66802 * 202.35895 * 10 9 2 31 31 H 1.08999 * 110.81537 * 79.29420 * 10 9 2 32 32 H 1.09000 * 110.72607 * 279.05468 * 11 10 9 33 33 H 1.09007 * 110.87656 * 155.84584 * 11 10 9 34 34 H 0.96999 * 120.00468 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4155 0.0000 4 6 1.8187 2.2263 1.0959 5 6 2.3030 3.5252 1.0879 6 6 2.9929 3.9654 -0.0317 7 6 3.1781 3.0992 -1.0921 8 7 2.7075 1.8680 -1.0478 9 7 2.0339 -0.7206 -1.1892 10 6 2.2660 -2.1194 -0.7469 11 6 2.8535 -1.9482 0.6765 12 6 2.0545 -0.7500 1.2385 13 1 2.7058 -0.1034 1.8266 14 6 0.9040 -1.2375 2.0809 15 1 0.1001 -1.7967 1.6254 16 6 0.8748 -0.9647 3.4322 17 7 -0.0842 -1.4613 4.1827 18 14 2.1974 0.1101 4.1968 19 1 1.8273 1.5393 4.0374 20 1 2.3223 -0.2108 5.6413 21 1 3.4944 -0.1438 3.5195 22 1 -0.3634 0.4951 0.9005 23 1 -0.3633 0.5324 -0.8790 24 1 -0.3633 -1.0274 -0.0216 25 1 1.2729 1.8515 1.9492 26 1 2.1429 4.1802 1.9315 27 1 3.3808 4.9725 -0.0740 28 1 3.7139 3.4345 -1.9679 29 1 2.8867 -0.3030 -1.5306 30 1 2.9821 -2.6160 -1.4016 31 1 1.3289 -2.6751 -0.7121 32 1 3.9171 -1.7145 0.6292 33 1 2.6827 -2.8416 1.2772 34 1 -0.1050 -1.2691 5.1332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = 42.268609 kcal Electronic energy + Delta-G solvation = -16824.322130 eV Core-core repulsion = 14336.012785 eV Total energy + Delta-G solvation = -2488.309345 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20271 -37.89266 -32.79399 -32.13131 -31.88749 -29.55964 -28.99377 -25.46695 -24.38202 -23.10753 -22.34712 -20.04107 -18.61388 -17.22726 -16.61572 -15.82939 -15.39455 -14.64475 -14.39451 -13.72394 -13.49602 -13.06487 -12.90149 -12.57437 -12.45570 -12.14246 -11.74093 -11.34477 -11.10691 -10.87196 -10.59136 -10.42964 -10.02901 -9.73730 -9.63600 -9.46781 -9.09456 -8.91524 -8.67458 -8.48298 -7.79465 -6.14656 -4.10815 1.45560 1.60235 3.15704 3.28449 3.29217 4.14497 4.32076 4.57796 4.90237 5.07548 5.13843 5.27026 5.35401 5.59906 5.76044 5.84721 5.98286 6.09209 6.16700 6.28675 6.34779 6.43569 6.53610 6.61252 6.72421 6.81587 6.92573 7.04018 7.07395 7.20781 7.30807 7.55630 7.75789 8.17504 8.40643 8.48839 8.91681 9.47405 10.97825 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022049 B = 0.013010 C = 0.009630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.606193 B = 2151.655145 C = 2906.980185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.147 3.853 3 C 0.151 3.849 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.192 4.192 7 C 0.093 3.907 8 N -0.483 5.483 9 N -0.664 5.664 10 C 0.048 3.952 11 C -0.153 4.153 12 C -0.005 4.005 13 H 0.041 0.959 14 C -0.495 4.495 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.864 3.136 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.268 1.268 22 H 0.064 0.936 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.339 0.661 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 7.661 -6.646 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 C 0.013 3.987 4 C -0.183 4.183 5 C -0.105 4.105 6 C -0.212 4.212 7 C -0.064 4.064 8 N -0.192 5.192 9 N -0.293 5.293 10 C -0.082 4.082 11 C -0.193 4.193 12 C -0.026 4.026 13 H 0.060 0.940 14 C -0.533 4.533 15 H 0.102 0.898 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.693 3.307 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.193 1.193 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.183 7.000 -7.522 11.508 hybrid contribution 1.474 1.387 1.983 2.834 sum 6.657 8.388 -5.538 12.056 Atomic orbital electron populations 1.21504 0.91838 1.02296 0.99340 1.20982 0.96416 0.85899 0.91282 1.21704 0.91701 0.96934 0.88405 1.22202 1.01233 0.94343 1.00550 1.21562 0.95412 0.95721 0.97846 1.21997 1.02484 1.01150 0.95537 1.22654 0.96642 0.89404 0.97688 1.67356 1.09981 1.15377 1.26479 1.62775 1.34656 1.02123 1.29722 1.22985 0.99878 0.91141 0.94197 1.23284 0.97240 1.01327 0.97423 1.20565 0.96055 0.92751 0.93188 0.94045 1.20933 1.05848 1.34534 0.91986 0.89810 1.25049 0.95213 0.95589 0.97085 1.69874 1.32940 1.44424 1.06131 0.87102 0.83490 0.81631 0.78502 1.19773 1.21602 1.19332 0.91706 0.95341 0.91532 0.84025 0.85328 0.85455 0.83289 0.84287 0.92543 0.90517 0.94465 0.90797 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 7.48 37.16 0.28 -1.66 16 2 C 0.15 3.06 0.97 -131.68 -0.13 2.93 16 3 C 0.15 2.98 5.49 -82.59 -0.45 2.52 16 4 C -0.16 -3.11 8.50 -39.44 -0.34 -3.45 16 5 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 6 C -0.19 -2.62 10.11 -39.44 -0.40 -3.02 16 7 C 0.09 1.38 11.18 -17.55 -0.20 1.18 16 8 N -0.48 -8.76 8.70 -9.47 -0.08 -8.84 16 9 N -0.66 -12.95 6.91 -97.63 -0.67 -13.63 16 10 C 0.05 0.89 7.54 -1.90 -0.01 0.87 16 11 C -0.15 -3.17 6.60 -24.87 -0.16 -3.34 16 12 C 0.00 -0.11 2.18 -90.41 -0.20 -0.30 16 13 H 0.04 0.99 3.70 -51.93 -0.19 0.80 16 14 C -0.50 -12.86 6.84 -34.44 -0.24 -13.10 16 15 H 0.08 2.36 6.63 -52.49 -0.35 2.01 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -26.02 13.96 55.43 0.77 -25.25 16 18 Si 0.86 20.67 25.98 -169.99 -4.42 16.26 16 19 H -0.27 -6.14 6.59 56.52 0.37 -5.77 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.37 6.45 56.52 0.36 -6.01 16 22 H 0.06 1.43 7.18 -51.93 -0.37 1.05 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.46 6.81 -51.93 -0.35 1.10 16 25 H 0.14 2.93 5.99 -52.48 -0.31 2.61 16 26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 29 H 0.34 6.44 7.33 -39.29 -0.29 6.16 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.58 7.85 -51.93 -0.41 1.17 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 268.77 15.07 4.05 4.05 Total: -1.00 -28.61 268.77 -7.13 -35.74 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.44 Total: 8.81 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.34 Total: -17.14 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.02 Total: -47.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.42 Total: 16.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.61 -7.13 -35.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.004 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds