Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.06595 * 2 1 4 4 C 1.38223 * 119.62447 * 65.79361 * 3 2 1 5 5 C 1.38627 * 119.16672 * 179.75426 * 4 3 2 6 6 C 1.38678 * 118.41394 * 0.50972 * 5 4 3 7 7 C 1.38175 * 119.16416 * 359.73149 * 6 5 4 8 8 N 1.31862 * 119.61457 * 246.06656 * 3 2 1 9 9 N 1.47895 * 109.91875 * 238.78646 * 2 1 3 10 10 C 1.48530 * 105.82373 * 265.98340 * 9 2 1 11 11 C 1.54939 * 103.22320 * 320.79038 * 10 9 2 12 12 C 1.53998 * 109.91051 * 121.19737 * 2 1 3 13 13 H 1.08999 * 110.39407 * 237.08459 * 12 2 1 14 14 C 1.50693 * 110.31193 * 359.21483 * 12 2 1 15 15 H 1.07996 * 119.99956 * 50.73181 * 14 12 2 16 16 C 1.37884 * 119.99840 * 231.00211 * 14 12 2 17 17 N 1.31508 * 119.99845 * 184.30310 * 16 14 12 18 18 Si 1.86793 * 119.99986 * 4.31072 * 16 14 12 19 19 H 1.48495 * 109.47509 * 84.64047 * 18 16 14 20 20 H 1.48496 * 109.47053 * 204.64476 * 18 16 14 21 21 H 1.48504 * 109.47089 * 324.64162 * 18 16 14 22 22 H 1.09005 * 109.47562 * 298.80392 * 1 2 3 23 23 H 1.09003 * 109.46714 * 58.79773 * 1 2 3 24 24 H 1.08992 * 109.47310 * 178.79724 * 1 2 3 25 25 H 1.08003 * 120.41553 * 359.97438 * 4 3 2 26 26 H 1.07992 * 120.79342 * 180.22192 * 5 4 3 27 27 H 1.08007 * 120.41460 * 179.75338 * 6 5 4 28 28 H 1.08005 * 119.61701 * 179.97438 * 7 6 5 29 29 H 1.00904 * 110.99722 * 145.46458 * 9 2 1 30 30 H 1.08997 * 110.66802 * 202.35895 * 10 9 2 31 31 H 1.08999 * 110.81537 * 79.29420 * 10 9 2 32 32 H 1.09000 * 110.72607 * 279.05468 * 11 10 9 33 33 H 1.09007 * 110.87656 * 155.84584 * 11 10 9 34 34 H 0.96999 * 120.00468 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4155 0.0000 4 6 1.8187 2.2263 1.0959 5 6 2.3030 3.5252 1.0879 6 6 2.9929 3.9654 -0.0317 7 6 3.1781 3.0992 -1.0921 8 7 2.7075 1.8680 -1.0478 9 7 2.0339 -0.7206 -1.1892 10 6 2.2660 -2.1194 -0.7469 11 6 2.8535 -1.9482 0.6765 12 6 2.0545 -0.7500 1.2385 13 1 2.7058 -0.1034 1.8266 14 6 0.9040 -1.2375 2.0809 15 1 0.1001 -1.7967 1.6254 16 6 0.8748 -0.9647 3.4322 17 7 -0.0842 -1.4613 4.1827 18 14 2.1974 0.1101 4.1968 19 1 1.8273 1.5393 4.0374 20 1 2.3223 -0.2108 5.6413 21 1 3.4944 -0.1438 3.5195 22 1 -0.3634 0.4951 0.9005 23 1 -0.3633 0.5324 -0.8790 24 1 -0.3633 -1.0274 -0.0216 25 1 1.2729 1.8515 1.9492 26 1 2.1429 4.1802 1.9315 27 1 3.3808 4.9725 -0.0740 28 1 3.7139 3.4345 -1.9679 29 1 2.8867 -0.3030 -1.5306 30 1 2.9821 -2.6160 -1.4016 31 1 1.3289 -2.6751 -0.7121 32 1 3.9171 -1.7145 0.6292 33 1 2.6827 -2.8416 1.2772 34 1 -0.1050 -1.2691 5.1332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = 22.660430 kcal Electronic energy + Delta-G solvation = -16825.172404 eV Core-core repulsion = 14336.012785 eV Total energy + Delta-G solvation = -2489.159620 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58050 -39.41749 -34.76670 -33.45123 -33.33484 -31.34907 -30.47428 -27.22361 -26.12978 -24.35425 -23.79018 -21.68737 -20.26795 -19.05582 -18.18271 -17.19178 -16.63201 -16.49429 -15.74667 -15.41571 -14.94762 -14.76246 -14.52616 -14.17876 -14.06925 -13.58333 -13.35801 -12.96408 -12.89374 -12.59367 -12.23544 -12.06861 -11.83539 -11.60793 -11.30763 -10.91651 -10.77563 -10.68112 -10.32477 -9.84372 -9.39604 -8.26166 -6.24562 0.20720 0.37689 1.25789 1.30321 1.38116 2.31227 2.87567 3.07380 3.24314 3.42328 3.93967 4.04695 4.16749 4.26868 4.30804 4.34542 4.38776 4.62578 4.66852 4.76985 4.86472 4.94722 5.05152 5.07816 5.20069 5.23093 5.27201 5.34437 5.42681 5.54750 5.68583 5.86175 6.02565 6.36803 6.71179 6.78340 7.11577 7.35916 8.89753 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022049 B = 0.013010 C = 0.009630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.606193 B = 2151.655145 C = 2906.980185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.150 3.850 3 C 0.126 3.874 4 C -0.190 4.190 5 C -0.081 4.081 6 C -0.171 4.171 7 C 0.091 3.909 8 N -0.499 5.499 9 N -0.660 5.660 10 C 0.054 3.946 11 C -0.153 4.153 12 C -0.008 4.008 13 H 0.034 0.966 14 C -0.482 4.482 15 H 0.049 0.951 16 C 0.019 3.981 17 N -0.945 5.945 18 Si 0.919 3.081 19 H -0.252 1.252 20 H -0.293 1.293 21 H -0.263 1.263 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.114 0.886 26 H 0.154 0.846 27 H 0.174 0.826 28 H 0.190 0.810 29 H 0.346 0.654 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 10.207 -8.185 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 C -0.011 4.011 4 C -0.211 4.211 5 C -0.107 4.107 6 C -0.191 4.191 7 C -0.066 4.066 8 N -0.208 5.208 9 N -0.290 5.290 10 C -0.076 4.076 11 C -0.193 4.193 12 C -0.029 4.029 13 H 0.053 0.947 14 C -0.521 4.521 15 H 0.067 0.933 16 C -0.178 4.178 17 N -0.585 5.585 18 Si 0.745 3.255 19 H -0.177 1.177 20 H -0.220 1.220 21 H -0.188 1.188 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.172 0.828 27 H 0.191 0.809 28 H 0.206 0.794 29 H 0.165 0.835 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.618 9.550 -9.083 15.223 hybrid contribution 0.715 0.655 2.347 2.539 sum 8.333 10.205 -6.737 14.797 Atomic orbital electron populations 1.21345 0.93020 1.00857 0.98802 1.20683 0.95621 0.87457 0.90511 1.21352 0.93777 0.96284 0.89689 1.22104 1.02788 0.96288 0.99877 1.21921 0.94743 0.94475 0.99565 1.22481 1.00058 1.02791 0.93721 1.23405 0.95619 0.88242 0.99328 1.67311 1.10319 1.17347 1.25847 1.62699 1.35031 1.02257 1.29006 1.22973 1.00040 0.90995 0.93557 1.23229 0.97972 0.99705 0.98386 1.20548 0.94877 0.93722 0.93793 0.94738 1.21024 1.05739 1.33014 0.92274 0.93312 1.25724 0.97284 0.97056 0.97692 1.70014 1.35336 1.46769 1.06395 0.86200 0.81046 0.81089 0.77116 1.17689 1.22004 1.18789 0.93620 0.94278 0.93425 0.86753 0.82827 0.80863 0.79351 0.83540 0.89117 0.91764 0.92811 0.92207 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.59 7.48 71.98 0.54 -3.05 16 2 C 0.15 6.25 0.97 2.93 0.00 6.25 16 3 C 0.13 4.83 5.49 42.55 0.23 5.06 16 4 C -0.19 -7.03 8.50 22.36 0.19 -6.84 16 5 C -0.08 -2.26 10.18 22.47 0.23 -2.03 16 6 C -0.17 -3.78 10.11 22.36 0.23 -3.56 16 7 C 0.09 2.27 11.18 84.67 0.95 3.21 16 8 N -0.50 -16.68 8.70 -183.89 -1.60 -18.28 16 9 N -0.66 -25.01 6.91 -462.80 -3.20 -28.20 16 10 C 0.05 1.95 7.54 86.65 0.65 2.60 16 11 C -0.15 -6.29 6.60 31.80 0.21 -6.08 16 12 C -0.01 -0.39 2.18 -10.66 -0.02 -0.41 16 13 H 0.03 1.64 3.70 -2.39 -0.01 1.63 16 14 C -0.48 -26.15 6.84 25.60 0.18 -25.97 16 15 H 0.05 2.93 6.63 -2.91 -0.02 2.91 16 16 C 0.02 1.09 5.47 84.66 0.46 1.56 16 17 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 18 Si 0.92 43.35 25.98 68.60 1.78 45.13 16 19 H -0.25 -10.98 6.59 99.48 0.66 -10.32 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.26 -12.06 6.45 99.48 0.64 -11.42 16 22 H 0.04 2.12 7.18 -2.38 -0.02 2.10 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 2.20 6.81 -2.39 -0.02 2.18 16 25 H 0.11 4.78 5.99 -2.91 -0.02 4.76 16 26 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.35 12.38 7.33 -89.69 -0.66 11.73 16 30 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.58 7.85 -2.38 -0.02 2.56 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -64.38 268.77 1.46 -62.92 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.33 Total: 24.70 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.84 Total: -29.25 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.50 Total: -103.50 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.78 Total: 45.13 kcal Total: -64.38 1.46 -62.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.579 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds