Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 110.07011 * 2 1 4 4 C 1.38228 * 119.61922 * 231.44756 * 3 2 1 5 5 C 1.38624 * 119.15787 * 179.97438 * 4 3 2 6 6 C 1.38679 * 118.42078 * 359.97438 * 5 4 3 7 7 C 1.38174 * 119.16398 * 0.02562 * 6 5 4 8 8 N 1.31856 * 119.61412 * 51.17289 * 3 2 1 9 9 N 1.47911 * 109.91459 * 238.79845 * 2 1 3 10 10 C 1.48529 * 105.81734 * 265.97713 * 9 2 1 11 11 C 1.54941 * 103.23061 * 320.79310 * 10 9 2 12 12 C 1.53986 * 109.91793 * 121.20832 * 2 1 3 13 13 H 1.08992 * 110.31198 * 359.21110 * 12 2 1 14 14 C 1.50704 * 110.31251 * 237.03946 * 12 2 1 15 15 H 1.08004 * 119.99474 * 354.60830 * 14 12 2 16 16 C 1.37873 * 120.00405 * 174.60540 * 14 12 2 17 17 N 1.31520 * 119.99758 * 359.97438 * 16 14 12 18 18 Si 1.86792 * 120.00203 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47314 * 59.99863 * 18 16 14 20 20 H 1.48503 * 109.47556 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47134 * 300.00127 * 18 16 14 22 22 H 1.08994 * 109.47302 * 179.74850 * 1 2 3 23 23 H 1.09008 * 109.46666 * 299.75316 * 1 2 3 24 24 H 1.09006 * 109.47024 * 59.74211 * 1 2 3 25 25 H 1.07995 * 120.41779 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.78979 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.41619 * 180.02562 * 6 5 4 28 28 H 1.07998 * 119.61708 * 179.97438 * 7 6 5 29 29 H 1.00897 * 110.99950 * 26.49144 * 9 2 1 30 30 H 1.08998 * 110.66971 * 79.22907 * 10 9 2 31 31 H 1.09005 * 110.66799 * 202.35654 * 10 9 2 32 32 H 1.09000 * 110.72285 * 279.06132 * 11 10 9 33 33 H 1.09000 * 110.87773 * 155.84178 * 11 10 9 34 34 H 0.96998 * 119.99557 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4156 0.0000 4 6 2.9850 1.8002 -0.9397 5 6 3.4538 3.1048 -0.9314 6 6 2.9591 3.9778 0.0259 7 6 2.0224 3.5214 0.9335 8 7 1.5957 2.2742 0.8930 9 7 2.0338 -0.7204 -1.1895 10 6 2.2659 -2.1193 -0.7474 11 6 2.8536 -1.9484 0.6761 12 6 2.0545 -0.7502 1.2382 13 1 1.2225 -1.1028 1.8476 14 6 2.9557 0.1450 2.0493 15 1 3.2157 1.1263 1.6807 16 6 3.4481 -0.2887 3.2619 17 7 3.1310 -1.4835 3.7110 18 14 4.5645 0.8210 4.2675 19 1 3.8446 2.0764 4.6010 20 1 4.9552 0.1261 5.5204 21 1 5.7819 1.1429 3.4803 22 1 -0.3633 -1.0276 -0.0045 23 1 -0.3633 0.5100 0.8923 24 1 -0.3633 0.5179 -0.8877 25 1 3.3473 1.0936 -1.6717 26 1 4.1868 3.4335 -1.6531 27 1 3.3016 5.0014 0.0616 28 1 1.6325 4.1949 1.6823 29 1 1.3643 -0.6859 -1.9436 30 1 1.3274 -2.6724 -0.7122 31 1 2.9821 -2.6159 -1.4022 32 1 3.9171 -1.7146 0.6288 33 1 2.6827 -2.8418 1.2767 34 1 3.4777 -1.7887 4.5639 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = 27.851483 kcal Electronic energy + Delta-G solvation = -16868.378427 eV Core-core repulsion = 14379.443908 eV Total energy + Delta-G solvation = -2488.934519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39176 -39.17712 -34.77335 -33.48848 -32.65727 -31.02535 -30.44676 -27.58756 -25.50930 -24.04117 -23.82519 -21.70036 -20.39465 -18.61154 -17.61161 -16.89733 -16.69519 -16.39137 -16.01032 -15.39627 -14.84836 -14.51049 -14.05966 -13.80632 -13.72301 -13.44914 -13.28165 -12.89599 -12.77430 -12.60787 -12.45109 -12.29493 -11.87911 -11.59380 -11.11769 -10.86037 -10.46206 -10.41256 -10.02014 -9.47110 -9.31061 -8.08843 -6.09649 0.52759 0.69530 1.34409 1.35580 1.42374 2.43368 3.13693 3.21852 3.26958 3.89945 4.10592 4.19402 4.22293 4.33419 4.46103 4.52304 4.57165 4.67613 4.69725 4.78927 4.94717 5.05674 5.16764 5.18100 5.28134 5.38225 5.49009 5.53379 5.61475 5.71847 5.88360 6.09683 6.21105 6.41624 6.67274 6.94629 7.47337 7.53914 9.01872 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.014734 C = 0.009723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.174218 B = 1899.874229 C = 2879.173326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.141 3.859 3 C 0.174 3.826 4 C -0.170 4.170 5 C -0.088 4.088 6 C -0.191 4.191 7 C 0.070 3.930 8 N -0.500 5.500 9 N -0.657 5.657 10 C 0.048 3.952 11 C -0.096 4.096 12 C 0.055 3.945 13 H 0.004 0.996 14 C -0.492 4.492 15 H 0.060 0.940 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.935 3.065 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.343 0.657 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 6.067 -10.839 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.050 3.950 3 C 0.037 3.963 4 C -0.190 4.190 5 C -0.114 4.114 6 C -0.211 4.211 7 C -0.088 4.088 8 N -0.209 5.209 9 N -0.287 5.287 10 C -0.081 4.081 11 C -0.134 4.134 12 C 0.036 3.964 13 H 0.022 0.978 14 C -0.531 4.531 15 H 0.078 0.922 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.762 3.238 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.165 0.835 26 H 0.175 0.825 27 H 0.176 0.824 28 H 0.178 0.822 29 H 0.160 0.840 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.482 5.901 -10.069 11.764 hybrid contribution 0.326 0.198 0.798 0.885 sum -1.156 6.099 -9.271 11.157 Atomic orbital electron populations 1.22178 0.94800 1.01395 1.02019 1.20462 0.92892 0.89769 0.91920 1.20683 0.92734 0.93959 0.88965 1.22154 0.98329 0.97366 1.01182 1.21907 0.98311 0.92948 0.98257 1.22310 0.99405 1.02211 0.97133 1.23028 0.95522 0.92007 0.98200 1.67364 1.28481 1.03505 1.21552 1.62825 1.47773 1.10973 1.07119 1.23003 0.99561 0.89417 0.96073 1.22303 0.98788 0.98177 0.94170 1.19381 0.94077 0.92340 0.90634 0.97807 1.21588 1.27213 1.01051 1.03208 0.92214 1.25588 0.98221 0.96140 0.98825 1.70066 1.46731 1.19162 1.20674 0.85956 0.79799 0.79575 0.78473 1.20180 1.21078 1.20130 0.92324 0.93084 0.91714 0.83481 0.82457 0.82400 0.82222 0.84021 0.93601 0.89025 0.94564 0.94305 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.07 71.98 0.58 -4.69 16 2 C 0.14 5.77 1.05 2.92 0.00 5.77 16 3 C 0.17 7.16 3.45 42.56 0.15 7.31 16 4 C -0.17 -6.11 9.39 22.36 0.21 -5.90 16 5 C -0.09 -2.64 10.18 22.47 0.23 -2.41 16 6 C -0.19 -5.61 10.11 22.36 0.23 -5.38 16 7 C 0.07 2.48 11.17 84.67 0.95 3.43 16 8 N -0.50 -21.40 8.27 -183.89 -1.52 -22.92 16 9 N -0.66 -22.34 5.42 -462.77 -2.51 -24.85 16 10 C 0.05 1.67 7.54 86.65 0.65 2.32 16 11 C -0.10 -4.45 6.10 31.80 0.19 -4.26 16 12 C 0.06 2.79 2.42 -10.66 -0.03 2.77 16 13 H 0.00 0.22 7.68 -2.39 -0.02 0.20 16 14 C -0.49 -27.64 7.34 25.60 0.19 -27.45 16 15 H 0.06 3.37 4.87 -2.91 -0.01 3.36 16 16 C 0.01 0.54 5.38 84.65 0.46 1.00 16 17 N -0.93 -55.67 12.91 21.45 0.28 -55.39 16 18 Si 0.93 46.32 29.54 68.60 2.03 48.35 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 24 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.15 4.97 6.94 -2.91 -0.02 4.95 16 26 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 27 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.16 4.80 8.06 -2.91 -0.02 4.77 16 29 H 0.34 9.49 8.43 -89.70 -0.76 8.73 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -66.63 276.55 2.42 -64.22 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.34 Total: 18.09 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 3.81 Total: -27.50 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.75 Total: -103.15 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -66.63 2.42 -64.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.067 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds