Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.06493 * 2 1 4 4 C 1.38230 * 119.61819 * 63.53051 * 3 2 1 5 5 C 1.38628 * 119.16054 * 179.71134 * 4 3 2 6 6 C 1.38675 * 118.41976 * 0.54518 * 5 4 3 7 7 C 1.38181 * 119.16333 * 359.73004 * 6 5 4 8 8 N 1.31854 * 119.61874 * 243.79152 * 3 2 1 9 9 N 1.47906 * 109.91660 * 121.20679 * 2 1 3 10 10 C 1.48530 * 105.81766 * 94.02166 * 9 2 1 11 11 C 1.55106 * 103.28618 * 39.15190 * 10 9 2 12 12 C 1.53994 * 109.91484 * 238.79649 * 2 1 3 13 13 H 1.09002 * 110.30910 * 122.95553 * 12 2 1 14 14 C 1.50704 * 110.30890 * 0.88768 * 12 2 1 15 15 H 1.07997 * 120.00165 * 1.38776 * 14 12 2 16 16 C 1.37878 * 119.99767 * 181.38677 * 14 12 2 17 17 N 1.31515 * 119.99813 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00046 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47398 * 89.99742 * 18 16 14 20 20 H 1.48505 * 109.46910 * 209.99793 * 18 16 14 21 21 H 1.48500 * 109.47086 * 329.99643 * 18 16 14 22 22 H 1.08998 * 109.47451 * 181.20803 * 1 2 3 23 23 H 1.09007 * 109.46910 * 301.20562 * 1 2 3 24 24 H 1.08998 * 109.47145 * 61.20110 * 1 2 3 25 25 H 1.08004 * 120.41695 * 359.97430 * 4 3 2 26 26 H 1.07998 * 120.79100 * 180.30235 * 5 4 3 27 27 H 1.07994 * 120.41567 * 179.71793 * 6 5 4 28 28 H 1.07998 * 119.61679 * 180.02562 * 7 6 5 29 29 H 1.00900 * 110.99646 * 214.53354 * 9 2 1 30 30 H 1.09006 * 110.66628 * 157.64053 * 10 9 2 31 31 H 1.09000 * 110.66938 * 280.60362 * 10 9 2 32 32 H 1.08997 * 110.81019 * 204.33417 * 11 10 9 33 33 H 1.08998 * 110.70771 * 81.00224 * 11 10 9 34 34 H 0.96997 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 1.7783 2.2410 1.0757 5 6 2.2636 3.5395 1.0685 6 6 2.9947 3.9647 -0.0304 7 6 3.2184 3.0846 -1.0719 8 7 2.7461 1.8539 -1.0284 9 7 2.0338 -0.7205 1.1894 10 6 2.2660 -2.1193 0.7471 11 6 2.8530 -1.9497 -0.6785 12 6 2.0545 -0.7501 -1.2384 13 1 2.7062 -0.1026 -1.8250 14 6 0.9040 -1.2355 -2.0821 15 1 -0.1117 -1.0159 -1.7880 16 6 1.1482 -1.9601 -3.2295 17 7 0.1442 -2.3842 -3.9655 18 14 2.9050 -2.3406 -3.7377 19 1 3.3277 -3.6287 -3.1318 20 1 2.9815 -2.4409 -5.2174 21 1 3.8024 -1.2546 -3.2682 22 1 -0.3634 -1.0274 0.0217 23 1 -0.3633 0.5325 0.8790 24 1 -0.3633 0.4951 -0.9005 25 1 1.2011 1.8775 1.9131 26 1 2.0735 4.2053 1.8973 27 1 3.3842 4.9712 -0.0718 28 1 3.7872 3.4079 -1.9312 29 1 2.8866 -0.3029 1.5307 30 1 2.9822 -2.6159 1.4018 31 1 1.3278 -2.6733 0.7148 32 1 2.6782 -2.8430 -1.2781 33 1 3.9168 -1.7170 -0.6321 34 1 0.3159 -2.8942 -4.7725 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = 53.732136 kcal Electronic energy + Delta-G solvation = -16703.555306 eV Core-core repulsion = 14215.743057 eV Total energy + Delta-G solvation = -2487.812249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23790 -37.96268 -32.60130 -32.27694 -31.90039 -29.68103 -29.04945 -25.42273 -24.30748 -23.18892 -22.31749 -20.32742 -18.63859 -17.05022 -16.20565 -15.73110 -15.67439 -14.71432 -14.35651 -13.85571 -13.58816 -13.02193 -12.95032 -12.55133 -12.41145 -12.30269 -11.61297 -11.37388 -11.09628 -10.65849 -10.45679 -10.34228 -10.02923 -9.80895 -9.59778 -9.44047 -8.84162 -8.76031 -8.55552 -8.41473 -7.97100 -5.95277 -3.92121 1.38924 1.56727 3.34240 3.45235 3.51872 4.10458 4.53173 4.53932 4.95045 5.02693 5.07691 5.31032 5.35974 5.45254 5.72319 5.80477 5.94000 6.00025 6.12864 6.25479 6.32599 6.37457 6.39981 6.51369 6.70218 6.81951 6.91029 7.02185 7.12925 7.20805 7.40423 7.67534 7.91771 7.96060 8.44191 8.63660 9.09170 9.68398 11.16516 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.009935 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.675430 B = 2817.628581 C = 3128.993927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.153 3.847 3 C 0.145 3.855 4 C -0.160 4.160 5 C -0.083 4.083 6 C -0.187 4.187 7 C 0.094 3.906 8 N -0.461 5.461 9 N -0.664 5.664 10 C 0.053 3.947 11 C -0.167 4.167 12 C -0.006 4.006 13 H 0.067 0.933 14 C -0.507 4.507 15 H 0.091 0.909 16 C 0.070 3.930 17 N -0.905 5.905 18 Si 0.874 3.126 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.262 1.262 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.323 0.677 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 9.038 9.915 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.062 3.938 3 C 0.007 3.993 4 C -0.181 4.181 5 C -0.109 4.109 6 C -0.207 4.207 7 C -0.063 4.063 8 N -0.170 5.170 9 N -0.291 5.291 10 C -0.076 4.076 11 C -0.206 4.206 12 C -0.026 4.026 13 H 0.085 0.915 14 C -0.545 4.545 15 H 0.109 0.891 16 C -0.130 4.130 17 N -0.545 5.545 18 Si 0.703 3.297 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.187 1.187 22 H 0.090 0.910 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.150 8.271 9.398 13.537 hybrid contribution 1.688 0.420 -0.344 1.773 sum 6.838 8.690 9.054 14.292 Atomic orbital electron populations 1.21658 0.92334 1.02544 0.99380 1.20561 0.96014 0.86306 0.90922 1.21573 0.91969 0.97055 0.88733 1.22011 1.01431 0.94221 1.00403 1.21524 0.95778 0.95806 0.97839 1.22056 1.01821 1.01058 0.95813 1.22819 0.96602 0.89283 0.97609 1.67626 1.08457 1.15288 1.25591 1.63044 1.32835 1.03100 1.30142 1.22981 1.00311 0.90048 0.94239 1.23565 0.97550 1.01894 0.97578 1.20466 0.96710 0.92102 0.93299 0.91547 1.21388 0.93810 1.33005 1.06288 0.89133 1.24983 0.96243 0.95590 0.96220 1.69898 1.30608 1.38164 1.15784 0.87005 0.86906 0.79007 0.76796 1.20805 1.22397 1.18691 0.91006 0.95047 0.91814 0.84580 0.85391 0.85466 0.83259 0.86261 0.92474 0.89923 0.91120 0.94488 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 7.17 37.16 0.27 -1.80 16 2 C 0.15 3.09 0.92 -131.68 -0.12 2.97 16 3 C 0.15 2.70 5.44 -82.59 -0.45 2.26 16 4 C -0.16 -2.43 9.06 -39.44 -0.36 -2.79 16 5 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 6 C -0.19 -2.36 10.11 -39.44 -0.40 -2.76 16 7 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 8 N -0.46 -8.99 8.23 -9.47 -0.08 -9.06 16 9 N -0.66 -11.91 6.86 -97.53 -0.67 -12.58 16 10 C 0.05 0.99 7.54 -1.81 -0.01 0.98 16 11 C -0.17 -3.64 5.12 -24.78 -0.13 -3.77 16 12 C -0.01 -0.13 1.99 -90.41 -0.18 -0.31 16 13 H 0.07 1.71 5.26 -51.93 -0.27 1.44 16 14 C -0.51 -14.02 8.22 -34.44 -0.28 -14.30 16 15 H 0.09 2.63 4.94 -52.49 -0.26 2.37 16 16 C 0.07 2.03 5.36 -17.82 -0.10 1.94 16 17 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 18 Si 0.87 22.40 24.73 -169.99 -4.20 18.20 16 19 H -0.28 -7.02 6.93 56.52 0.39 -6.63 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.26 -6.63 6.53 56.52 0.37 -6.27 16 22 H 0.07 1.56 7.19 -51.93 -0.37 1.19 16 23 H 0.03 0.55 7.60 -51.93 -0.39 0.15 16 24 H 0.06 1.41 7.04 -51.93 -0.37 1.04 16 25 H 0.14 1.88 7.81 -52.48 -0.41 1.47 16 26 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.32 5.35 8.34 -39.29 -0.33 5.02 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.07 1.67 5.23 -51.93 -0.27 1.40 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 266.94 15.07 4.02 4.02 Total: -1.00 -31.16 266.94 -6.90 -38.06 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.39 Total: 6.24 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.36 Total: -17.79 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.03 Total: -48.73 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.20 Total: 18.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.16 -6.90 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.790 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds