Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.06493 * 2 1 4 4 C 1.38230 * 119.61819 * 63.53051 * 3 2 1 5 5 C 1.38628 * 119.16054 * 179.71134 * 4 3 2 6 6 C 1.38675 * 118.41976 * 0.54518 * 5 4 3 7 7 C 1.38181 * 119.16333 * 359.73004 * 6 5 4 8 8 N 1.31854 * 119.61874 * 243.79152 * 3 2 1 9 9 N 1.47906 * 109.91660 * 121.20679 * 2 1 3 10 10 C 1.48530 * 105.81766 * 94.02166 * 9 2 1 11 11 C 1.55106 * 103.28618 * 39.15190 * 10 9 2 12 12 C 1.53994 * 109.91484 * 238.79649 * 2 1 3 13 13 H 1.09002 * 110.30910 * 122.95553 * 12 2 1 14 14 C 1.50704 * 110.30890 * 0.88768 * 12 2 1 15 15 H 1.07997 * 120.00165 * 1.38776 * 14 12 2 16 16 C 1.37878 * 119.99767 * 181.38677 * 14 12 2 17 17 N 1.31515 * 119.99813 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00046 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47398 * 89.99742 * 18 16 14 20 20 H 1.48505 * 109.46910 * 209.99793 * 18 16 14 21 21 H 1.48500 * 109.47086 * 329.99643 * 18 16 14 22 22 H 1.08998 * 109.47451 * 181.20803 * 1 2 3 23 23 H 1.09007 * 109.46910 * 301.20562 * 1 2 3 24 24 H 1.08998 * 109.47145 * 61.20110 * 1 2 3 25 25 H 1.08004 * 120.41695 * 359.97430 * 4 3 2 26 26 H 1.07998 * 120.79100 * 180.30235 * 5 4 3 27 27 H 1.07994 * 120.41567 * 179.71793 * 6 5 4 28 28 H 1.07998 * 119.61679 * 180.02562 * 7 6 5 29 29 H 1.00900 * 110.99646 * 214.53354 * 9 2 1 30 30 H 1.09006 * 110.66628 * 157.64053 * 10 9 2 31 31 H 1.09000 * 110.66938 * 280.60362 * 10 9 2 32 32 H 1.08997 * 110.81019 * 204.33417 * 11 10 9 33 33 H 1.08998 * 110.70771 * 81.00224 * 11 10 9 34 34 H 0.96997 * 119.99750 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 1.7783 2.2410 1.0757 5 6 2.2636 3.5395 1.0685 6 6 2.9947 3.9647 -0.0304 7 6 3.2184 3.0846 -1.0719 8 7 2.7461 1.8539 -1.0284 9 7 2.0338 -0.7205 1.1894 10 6 2.2660 -2.1193 0.7471 11 6 2.8530 -1.9497 -0.6785 12 6 2.0545 -0.7501 -1.2384 13 1 2.7062 -0.1026 -1.8250 14 6 0.9040 -1.2355 -2.0821 15 1 -0.1117 -1.0159 -1.7880 16 6 1.1482 -1.9601 -3.2295 17 7 0.1442 -2.3842 -3.9655 18 14 2.9050 -2.3406 -3.7377 19 1 3.3277 -3.6287 -3.1318 20 1 2.9815 -2.4409 -5.2174 21 1 3.8024 -1.2546 -3.2682 22 1 -0.3634 -1.0274 0.0217 23 1 -0.3633 0.5325 0.8790 24 1 -0.3633 0.4951 -0.9005 25 1 1.2011 1.8775 1.9131 26 1 2.0735 4.2053 1.8973 27 1 3.3842 4.9712 -0.0718 28 1 3.7872 3.4079 -1.9312 29 1 2.8866 -0.3029 1.5307 30 1 2.9822 -2.6159 1.4018 31 1 1.3278 -2.6733 0.7148 32 1 2.6782 -2.8430 -1.2781 33 1 3.9168 -1.7170 -0.6321 34 1 0.3159 -2.8942 -4.7725 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = 31.083413 kcal Electronic energy + Delta-G solvation = -16704.537429 eV Core-core repulsion = 14215.743057 eV Total energy + Delta-G solvation = -2488.794372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.54063 -39.44483 -34.69900 -33.49893 -33.23909 -31.50230 -30.47044 -27.10890 -26.10721 -24.35121 -23.71439 -21.98898 -20.27975 -18.47203 -18.15561 -17.13474 -16.82827 -16.48178 -15.64237 -15.38865 -15.18384 -14.74220 -14.55707 -14.05329 -13.92215 -13.73290 -13.19098 -13.03805 -12.83473 -12.43063 -12.25706 -12.04198 -11.72274 -11.48259 -11.42280 -10.73484 -10.72018 -10.65625 -10.04042 -9.84951 -9.50484 -8.20471 -6.19160 0.25537 0.49428 1.27419 1.33771 1.45094 2.37856 2.93235 3.12055 3.21220 3.59208 3.93887 4.09667 4.16811 4.25612 4.32551 4.39578 4.41100 4.65729 4.71470 4.77705 4.88742 4.93248 5.03514 5.16090 5.18727 5.28124 5.34331 5.38379 5.50224 5.67535 5.79872 5.89061 5.97566 6.41108 6.55945 6.87891 7.26040 7.44009 8.94396 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.009935 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.675430 B = 2817.628581 C = 3128.993927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.156 3.844 3 C 0.114 3.886 4 C -0.160 4.160 5 C -0.075 4.075 6 C -0.169 4.169 7 C 0.074 3.926 8 N -0.512 5.512 9 N -0.649 5.649 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.011 4.011 13 H 0.049 0.951 14 C -0.499 4.499 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.953 5.953 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.300 1.300 21 H -0.258 1.258 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.149 0.851 26 H 0.171 0.829 27 H 0.169 0.831 28 H 0.166 0.834 29 H 0.336 0.664 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 11.004 12.337 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.065 3.935 3 C -0.024 4.024 4 C -0.180 4.180 5 C -0.100 4.100 6 C -0.189 4.189 7 C -0.083 4.083 8 N -0.221 5.221 9 N -0.277 5.277 10 C -0.069 4.069 11 C -0.207 4.207 12 C -0.031 4.031 13 H 0.067 0.933 14 C -0.537 4.537 15 H 0.082 0.918 16 C -0.183 4.183 17 N -0.595 5.595 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.228 1.228 21 H -0.182 1.182 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.166 0.834 26 H 0.188 0.812 27 H 0.186 0.814 28 H 0.183 0.817 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.045 10.243 11.851 17.175 hybrid contribution 1.063 -0.050 -1.063 1.504 sum 8.108 10.193 10.787 16.912 Atomic orbital electron populations 1.21473 0.93224 1.00981 0.99192 1.20314 0.95401 0.87992 0.89833 1.21290 0.94178 0.96523 0.90407 1.22124 1.01380 0.95014 0.99494 1.22010 0.94092 0.95083 0.98840 1.22477 0.99973 1.02111 0.94300 1.23227 0.96970 0.88686 0.99404 1.67446 1.10134 1.17753 1.26815 1.62932 1.33509 1.02510 1.28716 1.22953 1.00353 0.90663 0.92977 1.23477 0.98183 0.99831 0.99220 1.20389 0.95210 0.93042 0.94493 0.93327 1.21728 0.94255 1.31366 1.06380 0.91827 1.25723 0.99829 0.96131 0.96655 1.70037 1.32709 1.40108 1.16670 0.86050 0.82583 0.79357 0.76035 1.19400 1.22787 1.18175 0.93380 0.92099 0.94805 0.83352 0.81193 0.81392 0.81719 0.84807 0.88716 0.91361 0.93238 0.93111 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.77 7.17 71.98 0.52 -3.26 16 2 C 0.16 6.26 0.92 2.92 0.00 6.26 16 3 C 0.11 4.10 5.44 42.55 0.23 4.33 16 4 C -0.16 -4.36 9.06 22.36 0.20 -4.16 16 5 C -0.07 -1.54 10.18 22.47 0.23 -1.31 16 6 C -0.17 -3.53 10.11 22.36 0.23 -3.30 16 7 C 0.07 2.12 11.18 84.67 0.95 3.07 16 8 N -0.51 -19.61 8.23 -183.89 -1.51 -21.12 16 9 N -0.65 -22.05 6.86 -462.46 -3.17 -25.23 16 10 C 0.06 2.13 7.54 86.71 0.65 2.79 16 11 C -0.17 -7.22 5.12 31.86 0.16 -7.06 16 12 C -0.01 -0.53 1.99 -10.66 -0.02 -0.55 16 13 H 0.05 2.55 5.26 -2.39 -0.01 2.53 16 14 C -0.50 -28.76 8.22 25.60 0.21 -28.55 16 15 H 0.06 3.93 4.94 -2.91 -0.01 3.91 16 16 C 0.01 0.73 5.36 84.65 0.45 1.19 16 17 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 18 Si 0.93 47.52 24.73 68.60 1.70 49.21 16 19 H -0.27 -12.97 6.93 99.48 0.69 -12.28 16 20 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 21 H -0.26 -12.78 6.53 99.48 0.65 -12.13 16 22 H 0.05 2.17 7.19 -2.39 -0.02 2.15 16 23 H 0.06 2.11 7.60 -2.38 -0.02 2.09 16 24 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 25 H 0.15 3.58 7.81 -2.91 -0.02 3.56 16 26 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 27 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 29 H 0.34 10.17 8.34 -89.69 -0.75 9.43 16 30 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.05 2.32 5.23 -2.39 -0.01 2.31 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -71.09 266.94 1.41 -69.68 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.28 Total: 18.91 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.81 Total: -30.55 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.39 Total: -107.26 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.70 Total: 49.21 kcal Total: -71.09 1.41 -69.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.768 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds