Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47160 * 110.99886 * 2 1 4 4 C 1.52884 * 108.55323 * 165.37511 * 3 2 1 5 5 C 1.50818 * 109.95376 * 50.62939 * 4 3 2 6 6 N 1.32456 * 118.31065 * 163.08665 * 5 4 3 7 7 C 1.31620 * 122.18362 * 179.52428 * 6 5 4 8 8 C 1.38229 * 120.67917 * 0.05305 * 7 6 5 9 9 C 1.50703 * 120.53461 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46929 * 270.02237 * 9 8 7 11 11 H 1.08002 * 120.00398 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99784 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00224 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00017 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47206 * 89.99807 * 14 12 10 16 16 H 1.48497 * 109.47201 * 209.99641 * 14 12 10 17 17 H 1.48504 * 109.47369 * 329.99823 * 14 12 10 18 18 C 1.38488 * 118.93532 * 0.08490 * 8 7 6 19 19 C 1.37779 * 121.41206 * 342.84531 * 5 4 3 20 20 C 1.46666 * 110.99731 * 237.04836 * 2 1 3 21 21 H 1.08992 * 109.47459 * 178.99750 * 1 2 3 22 22 H 1.09004 * 109.47040 * 298.99901 * 1 2 3 23 23 H 1.09000 * 109.47033 * 58.99853 * 1 2 3 24 24 H 1.09008 * 109.61881 * 285.10257 * 3 2 1 25 25 H 1.08998 * 109.62041 * 45.65857 * 3 2 1 26 26 H 1.09001 * 109.39289 * 290.48018 * 4 3 2 27 27 H 1.09001 * 109.31146 * 170.72587 * 4 3 2 28 28 H 1.08005 * 119.65841 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.46520 * 30.02282 * 9 8 7 30 30 H 1.08998 * 109.47206 * 150.01864 * 9 8 7 31 31 H 0.96993 * 119.99908 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.64607 * 179.97438 * 18 8 7 33 33 H 1.09000 * 109.30225 * 295.96996 * 20 2 1 34 34 H 1.09004 * 109.30479 * 55.35841 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9964 1.3739 0.0000 4 6 3.4800 1.3255 0.3660 5 6 4.1908 0.3149 -0.4990 6 7 5.5122 0.3694 -0.5722 7 6 6.2099 -0.4800 -1.2962 8 6 5.5789 -1.4751 -2.0190 9 6 6.3810 -2.4462 -2.8464 10 6 6.5526 -1.8972 -4.2392 11 1 6.1235 -0.9408 -4.4994 12 6 7.2576 -2.6157 -5.1814 13 7 7.4070 -2.1368 -6.3972 14 14 7.9992 -4.2701 -4.7316 15 1 7.0144 -5.3462 -5.0099 16 1 9.2243 -4.4994 -5.5390 17 1 8.3486 -4.2800 -3.2883 18 6 4.1977 -1.5645 -1.9715 19 6 3.4956 -0.6487 -1.1965 20 6 1.9946 -0.7448 -1.1490 21 1 -0.3634 -1.0274 -0.0180 22 1 -0.3633 0.4982 0.8989 23 1 -0.3633 0.5293 -0.8809 24 1 1.8778 1.8114 -0.9913 25 1 1.4576 1.9727 0.7343 26 1 3.5854 1.0431 1.4135 27 1 3.9220 2.3096 0.2103 28 1 7.2864 -0.3983 -1.3261 29 1 7.3600 -2.5906 -2.3895 30 1 5.8579 -3.4013 -2.8942 31 1 7.9026 -2.6425 -7.0601 32 1 3.6763 -2.3309 -2.5258 33 1 1.7031 -1.7916 -1.0637 34 1 1.5778 -0.3315 -2.0675 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = 8.083956 kcal Electronic energy + Delta-G solvation = -15757.217640 eV Core-core repulsion = 13267.425937 eV Total energy + Delta-G solvation = -2489.791703 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59387 -38.72864 -35.81106 -34.28970 -33.35393 -32.33346 -29.33019 -27.93233 -25.56693 -24.58955 -23.61659 -22.94386 -20.56652 -19.00818 -17.75185 -17.37347 -16.78370 -16.26848 -15.83864 -15.47202 -15.39547 -14.83235 -14.38592 -14.24771 -13.82351 -13.72479 -13.50333 -13.39213 -13.05818 -12.87907 -12.51502 -12.20010 -12.17004 -12.00500 -11.72763 -11.59304 -10.81845 -10.45883 -10.31384 -9.48908 -9.31381 -8.32147 -6.38659 0.23150 0.39588 1.37306 1.39578 1.51348 2.34438 2.83405 2.92577 3.02577 3.35435 3.67909 3.89694 4.00282 4.20185 4.27391 4.28514 4.37239 4.49058 4.54665 4.63364 4.71034 4.75997 4.85765 4.93224 5.03662 5.07221 5.10816 5.11366 5.32558 5.51656 5.61369 5.81737 5.96172 6.11391 6.21543 6.66929 7.07814 7.25420 8.84509 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.042241 B = 0.005847 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.703411 B = 4787.927335 C = 5044.244195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.055 3.945 4 C -0.055 4.055 5 C 0.101 3.899 6 N -0.503 5.503 7 C 0.084 3.916 8 C -0.108 4.108 9 C 0.029 3.971 10 C -0.523 4.523 11 H 0.023 0.977 12 C 0.010 3.990 13 N -0.949 5.949 14 Si 0.953 3.047 15 H -0.263 1.263 16 H -0.283 1.283 17 H -0.243 1.243 18 C -0.086 4.086 19 C -0.133 4.133 20 C 0.105 3.895 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.269 0.731 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 2.661 14.256 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.073 4.073 4 C -0.093 4.093 5 C -0.035 4.035 6 N -0.212 5.212 7 C -0.074 4.074 8 C -0.110 4.110 9 C -0.009 4.009 10 C -0.561 4.561 11 H 0.042 0.958 12 C -0.187 4.187 13 N -0.589 5.589 14 Si 0.775 3.225 15 H -0.188 1.188 16 H -0.209 1.209 17 H -0.167 1.167 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.023 4.023 21 H 0.094 0.906 22 H 0.106 0.894 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.131 0.869 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.117 0.883 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.297 3.054 15.007 19.641 hybrid contribution 0.129 -0.835 -1.939 2.115 sum -12.169 2.219 13.068 17.994 Atomic orbital electron populations 1.22472 0.84974 1.03094 1.01844 1.62338 1.09595 1.14280 1.41103 1.22245 0.94273 0.89562 1.01242 1.20436 0.93703 0.96595 0.98522 1.21442 0.89235 0.96143 0.96715 1.67499 1.08803 1.25529 1.19359 1.22630 1.00505 0.90913 0.93321 1.21085 0.95268 0.98240 0.96449 1.18560 0.95587 0.94009 0.92770 1.21100 1.34450 1.05329 0.95243 0.95819 1.25985 0.95965 1.02430 0.94329 1.70058 1.42891 1.40917 1.05027 0.85623 0.78267 0.78736 0.79857 1.18805 1.20909 1.16674 1.21546 0.93491 0.99004 0.97152 1.20620 0.97604 0.96588 0.98743 1.20829 0.88478 1.00526 0.92494 0.90554 0.89383 0.95055 0.94672 0.86930 0.88844 0.89185 0.82771 0.94397 0.94506 0.92255 0.84233 0.88262 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.53 127.69 1.22 1.56 16 2 N -0.55 -11.70 4.95 -927.62 -4.59 -16.29 16 3 C 0.05 1.09 5.57 86.21 0.48 1.57 16 4 C -0.05 -1.35 6.18 29.85 0.18 -1.17 16 5 C 0.10 3.45 6.66 42.39 0.28 3.73 16 6 N -0.50 -19.55 10.22 -183.87 -1.88 -21.43 16 7 C 0.08 3.47 10.88 84.72 0.92 4.39 16 8 C -0.11 -4.66 5.08 -19.81 -0.10 -4.76 16 9 C 0.03 1.34 4.20 29.10 0.12 1.47 16 10 C -0.52 -30.20 9.65 25.60 0.25 -29.96 16 11 H 0.02 1.54 7.98 -2.91 -0.02 1.52 16 12 C 0.01 0.59 5.47 84.65 0.46 1.05 16 13 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 14 Si 0.95 43.12 27.47 68.60 1.88 45.00 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 18 C -0.09 -3.24 9.48 22.51 0.21 -3.03 16 19 C -0.13 -4.44 5.79 -19.86 -0.12 -4.56 16 20 C 0.11 2.65 5.25 85.53 0.45 3.10 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.09 1.00 8.12 -2.38 -0.02 0.98 16 23 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.03 0.74 8.05 -2.38 -0.02 0.73 16 25 H 0.11 1.56 8.01 -2.39 -0.02 1.55 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.16 6.04 8.06 -2.91 -0.02 6.02 16 29 H 0.04 1.72 7.15 -2.39 -0.02 1.70 16 30 H 0.04 1.63 7.53 -2.39 -0.02 1.61 16 31 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.25 8.13 -2.38 -0.02 1.23 16 Total: -1.00 -68.58 281.20 1.10 -67.48 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.01 Total: 10.76 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.37 Total: -26.59 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -6.17 Total: -96.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -68.58 1.10 -67.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.566 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds