Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.90693 * 2 1 4 4 C 1.38650 * 120.79150 * 321.56703 * 3 2 1 5 5 C 1.38206 * 119.16252 * 179.79484 * 4 3 2 6 6 N 1.31874 * 120.76396 * 0.48876 * 5 4 3 7 7 C 1.31871 * 121.72190 * 359.74063 * 6 5 4 8 8 C 1.38199 * 120.76655 * 0.02562 * 7 6 5 9 9 N 1.47897 * 109.91870 * 121.31102 * 2 1 3 10 10 C 1.48541 * 105.82154 * 94.02424 * 9 2 1 11 11 C 1.54934 * 103.22533 * 39.20282 * 10 9 2 12 12 C 1.53994 * 109.91646 * 238.89914 * 2 1 3 13 13 H 1.09007 * 110.30695 * 0.79084 * 12 2 1 14 14 C 1.50707 * 110.39285 * 122.91078 * 12 2 1 15 15 H 1.07997 * 119.99963 * 1.14949 * 14 12 2 16 16 C 1.37875 * 119.99847 * 181.15047 * 14 12 2 17 17 N 1.31512 * 120.00369 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99818 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47319 * 119.99839 * 18 16 14 21 21 H 1.48502 * 109.47136 * 240.00088 * 18 16 14 22 22 H 1.08997 * 109.46904 * 181.10092 * 1 2 3 23 23 H 1.09003 * 109.46917 * 301.09982 * 1 2 3 24 24 H 1.09001 * 109.47389 * 61.10147 * 1 2 3 25 25 H 1.07996 * 120.41778 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.61686 * 180.20448 * 5 4 3 27 27 H 1.08006 * 119.61030 * 179.97438 * 7 6 5 28 28 H 1.08007 * 120.41411 * 179.97438 * 8 7 6 29 29 H 1.00897 * 111.00236 * 333.50832 * 9 2 1 30 30 H 1.09002 * 110.66085 * 280.77085 * 10 9 2 31 31 H 1.08998 * 110.66742 * 157.64295 * 10 9 2 32 32 H 1.09006 * 110.72194 * 80.94980 * 11 10 9 33 33 H 1.09000 * 110.72144 * 204.23136 * 11 10 9 34 34 H 0.96994 * 119.99979 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4169 0.0000 4 6 1.4075 2.4020 -0.7404 5 6 1.9043 3.6913 -0.7126 6 7 2.9746 3.9867 -0.0009 7 6 3.6070 3.0746 0.7113 8 6 3.1654 1.7653 0.7358 9 7 2.0339 -0.7226 1.1880 10 6 2.2661 -2.1207 0.7432 11 6 2.8536 -1.9470 -0.6799 12 6 2.0546 -0.7479 -1.2397 13 1 1.2224 -1.0994 -1.8497 14 6 2.9551 0.1476 -2.0512 15 1 3.1604 1.1535 -1.7161 16 6 3.5167 -0.3174 -3.2213 17 7 3.2663 -1.5422 -3.6297 18 14 4.6335 0.7923 -4.2268 19 1 4.7536 2.1120 -3.5565 20 1 5.9772 0.1703 -4.3406 21 1 4.0570 0.9770 -5.5828 22 1 -0.3633 -1.0275 0.0197 23 1 -0.3633 0.5308 0.8800 24 1 -0.3634 0.4966 -0.8997 25 1 0.5331 2.1654 -1.3284 26 1 1.4130 4.4651 -1.2839 27 1 4.4808 3.3541 1.2814 28 1 3.6880 1.0229 1.3208 29 1 1.3645 -0.6896 1.9422 30 1 1.3275 -2.6738 0.7071 31 1 2.9823 -2.6185 1.3970 32 1 3.9172 -1.7134 -0.6322 33 1 2.6803 -2.8401 -1.2803 34 1 3.6618 -1.8694 -4.4527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 38.827787 kcal Electronic energy + Delta-G solvation = -16850.065850 eV Core-core repulsion = 14361.607300 eV Total energy + Delta-G solvation = -2488.458550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91659 -37.83344 -32.81374 -32.53223 -30.51164 -29.40440 -29.05439 -25.98640 -23.87451 -22.59432 -22.26414 -20.09167 -18.81827 -16.80992 -15.87298 -15.35275 -15.26771 -14.60652 -14.48627 -13.93614 -13.26237 -13.05936 -12.79788 -12.31741 -12.07176 -12.01180 -11.87756 -11.16828 -11.02584 -10.86908 -10.72491 -10.63292 -10.34076 -9.81145 -9.38290 -9.01904 -8.67908 -8.43968 -8.37076 -8.27956 -7.97266 -6.05111 -4.05512 1.92021 2.13197 3.29005 3.37874 3.45400 4.43898 4.58033 4.75992 5.11634 5.26272 5.36475 5.57023 5.67888 5.75598 5.87776 5.93236 6.02393 6.06637 6.12796 6.22462 6.36559 6.46325 6.53806 6.55458 6.80824 7.01481 7.07996 7.19031 7.37720 7.46371 7.54984 7.84607 7.92966 7.97913 8.35732 8.67105 8.95808 9.59582 11.05175 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.014661 C = 0.009698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.783355 B = 1909.339364 C = 2886.375781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 C 0.040 3.960 4 C -0.164 4.164 5 C 0.081 3.919 6 N -0.506 5.506 7 C 0.078 3.922 8 C -0.148 4.148 9 N -0.661 5.661 10 C 0.032 3.968 11 C -0.094 4.094 12 C 0.059 3.941 13 H 0.037 0.963 14 C -0.509 4.509 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.882 3.118 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.322 0.678 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 2.334 7.590 8.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C 0.031 3.969 4 C -0.185 4.185 5 C -0.075 4.075 6 N -0.216 5.216 7 C -0.078 4.078 8 C -0.168 4.168 9 N -0.289 5.289 10 C -0.097 4.097 11 C -0.133 4.133 12 C 0.040 3.960 13 H 0.055 0.945 14 C -0.547 4.547 15 H 0.087 0.913 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.711 3.289 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.078 3.293 7.417 8.680 hybrid contribution -0.543 -0.817 -0.901 1.332 sum -3.622 2.476 6.516 7.855 Atomic orbital electron populations 1.22432 0.96597 1.01348 1.01719 1.20821 0.91414 0.90914 0.93346 1.19781 0.92616 0.93830 0.90626 1.21866 1.02254 0.93816 1.00527 1.22432 0.93103 0.95210 0.96761 1.67507 1.08399 1.37573 1.08095 1.22551 0.98514 0.89931 0.96802 1.21939 0.97148 0.96904 1.00798 1.62958 1.47046 1.11443 1.07411 1.23136 0.98447 0.88980 0.99117 1.22457 1.00353 0.99581 0.90915 1.19532 0.95446 0.91892 0.89158 0.94510 1.21429 1.27941 0.99482 1.05877 0.91264 1.24923 0.96442 0.94887 0.97427 1.69967 1.44426 1.15703 1.22891 0.86659 0.80756 0.81311 0.80211 1.19632 1.21075 1.21100 0.92818 0.93491 0.91550 0.85621 0.84029 0.84047 0.84364 0.86325 0.95442 0.91602 0.91967 0.92198 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 7.74 37.16 0.29 -2.36 16 2 C 0.13 2.41 1.00 -131.69 -0.13 2.27 16 3 C 0.04 0.79 2.81 -104.32 -0.29 0.49 16 4 C -0.16 -3.08 8.09 -39.44 -0.32 -3.40 16 5 C 0.08 1.48 11.18 -17.54 -0.20 1.28 16 6 N -0.51 -9.74 10.36 -13.25 -0.14 -9.88 16 7 C 0.08 1.43 11.18 -17.55 -0.20 1.24 16 8 C -0.15 -2.82 9.04 -39.44 -0.36 -3.17 16 9 N -0.66 -11.47 5.79 -97.63 -0.56 -12.03 16 10 C 0.03 0.57 7.54 -1.89 -0.01 0.55 16 11 C -0.09 -2.09 5.81 -24.88 -0.14 -2.24 16 12 C 0.06 1.37 2.48 -90.42 -0.22 1.14 16 13 H 0.04 0.94 7.69 -51.92 -0.40 0.54 16 14 C -0.51 -13.30 7.55 -34.44 -0.26 -13.56 16 15 H 0.07 1.84 4.64 -52.49 -0.24 1.60 16 16 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 17 N -0.89 -25.01 12.70 55.43 0.70 -24.31 16 18 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.09 6.74 -51.93 -0.35 0.74 16 25 H 0.13 2.19 6.63 -52.49 -0.35 1.84 16 26 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.14 2.57 7.29 -52.48 -0.38 2.19 16 29 H 0.32 4.82 8.43 -39.29 -0.33 4.49 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -28.72 273.90 -7.39 -36.11 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.56 Total: 5.40 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -1.94 Total: -16.08 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.00 Total: -46.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.72 -7.39 -36.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.942 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds