Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.90693 * 2 1 4 4 C 1.38650 * 120.79150 * 321.56703 * 3 2 1 5 5 C 1.38206 * 119.16252 * 179.79484 * 4 3 2 6 6 N 1.31874 * 120.76396 * 0.48876 * 5 4 3 7 7 C 1.31871 * 121.72190 * 359.74063 * 6 5 4 8 8 C 1.38199 * 120.76655 * 0.02562 * 7 6 5 9 9 N 1.47897 * 109.91870 * 121.31102 * 2 1 3 10 10 C 1.48541 * 105.82154 * 94.02424 * 9 2 1 11 11 C 1.54934 * 103.22533 * 39.20282 * 10 9 2 12 12 C 1.53994 * 109.91646 * 238.89914 * 2 1 3 13 13 H 1.09007 * 110.30695 * 0.79084 * 12 2 1 14 14 C 1.50707 * 110.39285 * 122.91078 * 12 2 1 15 15 H 1.07997 * 119.99963 * 1.14949 * 14 12 2 16 16 C 1.37875 * 119.99847 * 181.15047 * 14 12 2 17 17 N 1.31512 * 120.00369 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99818 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47319 * 119.99839 * 18 16 14 21 21 H 1.48502 * 109.47136 * 240.00088 * 18 16 14 22 22 H 1.08997 * 109.46904 * 181.10092 * 1 2 3 23 23 H 1.09003 * 109.46917 * 301.09982 * 1 2 3 24 24 H 1.09001 * 109.47389 * 61.10147 * 1 2 3 25 25 H 1.07996 * 120.41778 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.61686 * 180.20448 * 5 4 3 27 27 H 1.08006 * 119.61030 * 179.97438 * 7 6 5 28 28 H 1.08007 * 120.41411 * 179.97438 * 8 7 6 29 29 H 1.00897 * 111.00236 * 333.50832 * 9 2 1 30 30 H 1.09002 * 110.66085 * 280.77085 * 10 9 2 31 31 H 1.08998 * 110.66742 * 157.64295 * 10 9 2 32 32 H 1.09006 * 110.72194 * 80.94980 * 11 10 9 33 33 H 1.09000 * 110.72144 * 204.23136 * 11 10 9 34 34 H 0.96994 * 119.99979 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4169 0.0000 4 6 1.4075 2.4020 -0.7404 5 6 1.9043 3.6913 -0.7126 6 7 2.9746 3.9867 -0.0009 7 6 3.6070 3.0746 0.7113 8 6 3.1654 1.7653 0.7358 9 7 2.0339 -0.7226 1.1880 10 6 2.2661 -2.1207 0.7432 11 6 2.8536 -1.9470 -0.6799 12 6 2.0546 -0.7479 -1.2397 13 1 1.2224 -1.0994 -1.8497 14 6 2.9551 0.1476 -2.0512 15 1 3.1604 1.1535 -1.7161 16 6 3.5167 -0.3174 -3.2213 17 7 3.2663 -1.5422 -3.6297 18 14 4.6335 0.7923 -4.2268 19 1 4.7536 2.1120 -3.5565 20 1 5.9772 0.1703 -4.3406 21 1 4.0570 0.9770 -5.5828 22 1 -0.3633 -1.0275 0.0197 23 1 -0.3633 0.5308 0.8800 24 1 -0.3634 0.4966 -0.8997 25 1 0.5331 2.1654 -1.3284 26 1 1.4130 4.4651 -1.2839 27 1 4.4808 3.3541 1.2814 28 1 3.6880 1.0229 1.3208 29 1 1.3645 -0.6896 1.9422 30 1 1.3275 -2.6738 0.7071 31 1 2.9823 -2.6185 1.3970 32 1 3.9172 -1.7134 -0.6322 33 1 2.6803 -2.8401 -1.2803 34 1 3.6618 -1.8694 -4.4527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 20.733211 kcal Electronic energy + Delta-G solvation = -16850.850490 eV Core-core repulsion = 14361.607300 eV Total energy + Delta-G solvation = -2489.243190 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39364 -39.34640 -34.79815 -34.00686 -31.93500 -31.09232 -30.57494 -27.64940 -25.59857 -24.04505 -23.77937 -21.74550 -20.39418 -18.59045 -17.53279 -16.85498 -16.77533 -16.40276 -16.04902 -15.44761 -14.80656 -14.55209 -14.30933 -13.87005 -13.74797 -13.52684 -13.42218 -12.99056 -12.68596 -12.58306 -12.47812 -12.24238 -11.95308 -11.61812 -11.15511 -10.87016 -10.48882 -10.17827 -9.85915 -9.79985 -9.35971 -8.13071 -6.15836 0.49257 0.66111 1.31927 1.37008 1.46478 2.40917 3.13486 3.20830 3.34731 3.78702 3.90889 4.18843 4.21074 4.36015 4.46025 4.51440 4.57016 4.63213 4.71230 4.79720 4.93224 5.00649 5.12082 5.16922 5.20159 5.37630 5.44793 5.57227 5.71735 5.74832 5.87181 6.06867 6.19178 6.37494 6.67830 6.92045 7.24367 7.50688 8.97172 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.014661 C = 0.009698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.783355 B = 1909.339364 C = 2886.375781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 C 0.024 3.976 4 C -0.175 4.175 5 C 0.076 3.924 6 N -0.521 5.521 7 C 0.074 3.926 8 C -0.158 4.158 9 N -0.659 5.659 10 C 0.046 3.954 11 C -0.091 4.091 12 C 0.053 3.947 13 H 0.010 0.990 14 C -0.506 4.506 15 H 0.065 0.935 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.932 3.068 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.281 1.281 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.134 0.866 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.341 0.659 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 3.077 8.840 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 C 0.015 3.985 4 C -0.195 4.195 5 C -0.080 4.080 6 N -0.231 5.231 7 C -0.082 4.082 8 C -0.178 4.178 9 N -0.289 5.289 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.033 3.967 13 H 0.028 0.972 14 C -0.544 4.544 15 H 0.083 0.917 16 C -0.180 4.180 17 N -0.559 5.559 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.207 1.207 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.152 0.848 26 H 0.187 0.813 27 H 0.186 0.814 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.544 4.043 8.680 10.210 hybrid contribution -0.399 -1.021 -1.276 1.682 sum -3.942 3.022 7.404 8.916 Atomic orbital electron populations 1.22361 0.94434 1.02105 1.02630 1.20626 0.93066 0.90412 0.91935 1.19966 0.93151 0.94164 0.91244 1.22056 1.02727 0.94073 1.00632 1.22908 0.92819 0.95790 0.96444 1.67590 1.08928 1.37977 1.08630 1.22997 0.99060 0.89585 0.96529 1.22053 0.97202 0.97414 1.01142 1.62884 1.47856 1.10868 1.07250 1.23016 0.99427 0.89622 0.96250 1.22238 0.98697 0.98242 0.93831 1.19459 0.94241 0.92387 0.90566 0.97226 1.21729 1.27360 0.99551 1.05785 0.91734 1.25522 0.97911 0.95850 0.98727 1.70060 1.45730 1.16844 1.23310 0.85897 0.79449 0.79545 0.79162 1.20270 1.21050 1.20728 0.92211 0.91100 0.92063 0.84785 0.81347 0.81412 0.84207 0.84171 0.93657 0.89615 0.94793 0.94304 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 7.74 71.98 0.56 -4.22 16 2 C 0.13 4.80 1.00 2.92 0.00 4.80 16 3 C 0.02 0.89 2.81 -19.67 -0.06 0.83 16 4 C -0.17 -6.28 8.09 22.36 0.18 -6.10 16 5 C 0.08 2.63 11.18 84.68 0.95 3.58 16 6 N -0.52 -19.04 10.36 -195.84 -2.03 -21.07 16 7 C 0.07 2.57 11.18 84.68 0.95 3.52 16 8 C -0.16 -5.78 9.04 22.36 0.20 -5.58 16 9 N -0.66 -21.31 5.79 -462.78 -2.68 -23.98 16 10 C 0.05 1.52 7.54 86.65 0.65 2.17 16 11 C -0.09 -4.07 5.81 31.80 0.18 -3.88 16 12 C 0.05 2.45 2.48 -10.66 -0.03 2.42 16 13 H 0.01 0.50 7.69 -2.38 -0.02 0.48 16 14 C -0.51 -26.54 7.55 25.60 0.19 -26.34 16 15 H 0.06 3.42 4.64 -2.91 -0.01 3.41 16 16 C 0.02 1.00 5.35 84.65 0.45 1.45 16 17 N -0.92 -52.57 12.70 21.45 0.27 -52.29 16 18 Si 0.93 44.86 29.54 68.60 2.03 46.88 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.92 6.74 -2.39 -0.02 1.90 16 25 H 0.13 4.48 6.63 -2.91 -0.02 4.46 16 26 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.17 4.73 8.06 -2.91 -0.02 4.70 16 28 H 0.14 4.98 7.29 -2.91 -0.02 4.96 16 29 H 0.34 9.04 8.43 -89.70 -0.76 8.28 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.03 1.66 7.86 -2.38 -0.02 1.64 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -61.09 273.90 2.17 -58.91 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.34 Total: 18.91 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.24 Total: -27.35 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -4.43 Total: -97.35 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.09 2.17 -58.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.646 kcal (2) G-P(sol) polarization free energy of solvation -61.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds