Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.91203 * 2 1 4 4 C 1.38648 * 120.79389 * 90.82148 * 3 2 1 5 5 C 1.38207 * 119.16697 * 179.80392 * 4 3 2 6 6 N 1.31869 * 120.75766 * 0.48290 * 5 4 3 7 7 C 1.31868 * 121.73031 * 359.74916 * 6 5 4 8 8 C 1.38208 * 120.76154 * 0.02562 * 7 6 5 9 9 N 1.47901 * 110.07880 * 238.78794 * 2 1 3 10 10 C 1.48537 * 105.82321 * 265.88747 * 9 2 1 11 11 C 1.54937 * 103.22666 * 320.79148 * 10 9 2 12 12 C 1.53998 * 109.91873 * 121.10407 * 2 1 3 13 13 H 1.09002 * 110.30791 * 237.23846 * 12 2 1 14 14 C 1.50701 * 110.30625 * 359.30637 * 12 2 1 15 15 H 1.07995 * 120.00154 * 358.61074 * 14 12 2 16 16 C 1.37880 * 119.99650 * 178.61247 * 14 12 2 17 17 N 1.31506 * 120.00344 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47103 * 89.99685 * 18 16 14 20 20 H 1.48495 * 109.46953 * 210.00033 * 18 16 14 21 21 H 1.48499 * 109.47007 * 329.99923 * 18 16 14 22 22 H 1.09006 * 109.46984 * 298.89978 * 1 2 3 23 23 H 1.08997 * 109.47407 * 58.89336 * 1 2 3 24 24 H 1.08999 * 109.47414 * 178.89752 * 1 2 3 25 25 H 1.08007 * 120.41621 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.62081 * 180.20929 * 5 4 3 27 27 H 1.07998 * 119.61936 * 179.97438 * 7 6 5 28 28 H 1.08004 * 120.41295 * 179.97438 * 8 7 6 29 29 H 1.00903 * 110.99869 * 145.37563 * 9 2 1 30 30 H 1.08993 * 110.66691 * 79.22711 * 10 9 2 31 31 H 1.09004 * 110.66677 * 202.36016 * 10 9 2 32 32 H 1.08995 * 110.72601 * 279.06037 * 11 10 9 33 33 H 1.09000 * 110.72575 * 155.77161 * 11 10 9 34 34 H 0.97001 * 120.00449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4169 0.0000 4 6 2.3010 2.0784 1.1909 5 6 2.7749 3.3761 1.1516 6 7 2.9727 3.9873 -0.0001 7 6 2.7339 3.3908 -1.1517 8 6 2.2631 2.0920 -1.1908 9 7 2.0377 -0.7199 -1.1881 10 6 2.2730 -2.1178 -0.7446 11 6 2.8578 -1.9443 0.6796 12 6 2.0546 -0.7480 1.2397 13 1 2.7036 -0.0983 1.8270 14 6 0.9041 -1.2360 2.0818 15 1 -0.1117 -1.0193 1.7860 16 6 1.1484 -1.9593 3.2300 17 7 2.3853 -2.2227 3.5905 18 14 -0.2778 -2.5649 4.2735 19 1 -0.6929 -3.9132 3.8097 20 1 0.1454 -2.6389 5.6950 21 1 -1.4195 -1.6241 4.1453 22 1 -0.3633 0.4967 0.8997 23 1 -0.3634 0.5309 -0.8798 24 1 -0.3634 -1.0274 -0.0198 25 1 2.1370 1.5846 2.1373 26 1 2.9813 3.8971 2.0747 27 1 2.9076 3.9237 -2.0749 28 1 2.0690 1.6091 -2.1372 29 1 2.8899 -0.3002 -1.5283 30 1 1.3360 -2.6735 -0.7107 31 1 2.9917 -2.6128 -1.3979 32 1 3.9208 -1.7076 0.6339 33 1 2.6861 -2.8386 1.2787 34 1 2.5572 -2.7318 4.3981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = 42.184429 kcal Electronic energy + Delta-G solvation = -16630.652313 eV Core-core repulsion = 14142.339318 eV Total energy + Delta-G solvation = -2488.312995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12276 -38.01071 -32.93441 -32.49688 -30.88840 -29.65406 -28.77198 -25.26325 -24.61600 -23.01978 -22.41235 -19.99716 -18.75251 -16.97987 -16.11758 -15.55904 -15.00046 -14.88194 -14.48490 -13.66842 -13.55400 -13.29372 -12.86879 -12.62150 -12.15773 -11.92992 -11.61520 -11.27327 -11.06004 -10.72222 -10.67779 -10.18228 -10.03233 -9.89586 -9.67001 -9.05415 -8.92025 -8.79907 -8.66809 -8.41962 -7.87299 -6.08454 -4.12309 1.54781 1.70993 3.25264 3.33192 3.35462 4.23123 4.37545 4.79827 4.86387 5.10181 5.25770 5.33392 5.58411 5.67601 5.84698 6.00459 6.12124 6.18638 6.22168 6.37661 6.40692 6.44977 6.58463 6.72053 6.78146 6.95992 7.07714 7.15183 7.16073 7.52920 7.54292 7.72732 7.87345 8.04185 8.32658 8.35729 8.89685 9.53073 10.99980 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.009075 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.216832 B = 3084.751242 C = 3496.170281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.132 3.868 3 C -0.022 4.022 4 C -0.154 4.154 5 C 0.087 3.913 6 N -0.499 5.499 7 C 0.084 3.916 8 C -0.171 4.171 9 N -0.671 5.671 10 C 0.044 3.956 11 C -0.134 4.134 12 C 0.034 3.966 13 H 0.038 0.962 14 C -0.518 4.518 15 H 0.073 0.927 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.066 0.934 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.135 0.865 29 H 0.324 0.676 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 5.013 -6.708 8.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 C -0.031 4.031 4 C -0.174 4.174 5 C -0.069 4.069 6 N -0.208 5.208 7 C -0.073 4.073 8 C -0.191 4.191 9 N -0.298 5.298 10 C -0.085 4.085 11 C -0.173 4.173 12 C 0.015 3.985 13 H 0.056 0.944 14 C -0.556 4.556 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.198 1.198 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.166 0.834 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.188 5.670 -6.913 8.943 hybrid contribution -0.099 -1.281 1.286 1.818 sum -0.287 4.390 -5.627 7.142 Atomic orbital electron populations 1.21610 0.92876 1.01966 0.99287 1.20836 0.95904 0.87424 0.91721 1.20729 0.92982 0.96719 0.92682 1.22379 0.99184 0.95574 1.00311 1.22690 0.95968 0.92381 0.95882 1.67582 1.16403 1.38215 0.98645 1.22600 0.96286 0.92479 0.95942 1.22058 1.01767 0.95967 0.99307 1.62992 1.32864 1.03337 1.30604 1.23065 0.99899 0.89881 0.95699 1.22986 0.96449 1.02964 0.94933 1.19990 0.95459 0.92330 0.90752 0.94436 1.21515 0.93192 1.34067 1.06809 0.90859 1.25008 0.95312 0.96133 0.97539 1.69983 1.18502 1.39634 1.24565 0.86672 0.82863 0.79286 0.79695 1.20749 1.21364 1.19843 0.92101 0.95123 0.91519 0.83388 0.83254 0.83528 0.84688 0.86118 0.90701 0.92874 0.95281 0.89761 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 7.30 37.16 0.27 -1.66 16 2 C 0.13 2.57 0.99 -131.69 -0.13 2.44 16 3 C -0.02 -0.40 4.70 -104.32 -0.49 -0.89 16 4 C -0.15 -2.79 8.82 -39.44 -0.35 -3.14 16 5 C 0.09 1.42 11.18 -17.55 -0.20 1.23 16 6 N -0.50 -8.27 10.36 -13.25 -0.14 -8.41 16 7 C 0.08 1.25 11.18 -17.55 -0.20 1.06 16 8 C -0.17 -2.68 8.93 -39.44 -0.35 -3.03 16 9 N -0.67 -12.08 6.50 -97.63 -0.64 -12.71 16 10 C 0.04 0.83 7.54 -1.90 -0.01 0.81 16 11 C -0.13 -2.99 6.15 -24.87 -0.15 -3.14 16 12 C 0.03 0.79 2.09 -90.41 -0.19 0.60 16 13 H 0.04 0.94 5.76 -51.93 -0.30 0.64 16 14 C -0.52 -12.97 7.64 -34.44 -0.26 -13.24 16 15 H 0.07 1.80 4.70 -52.49 -0.25 1.55 16 16 C 0.06 1.61 5.09 -17.82 -0.09 1.52 16 17 N -0.89 -24.31 12.03 55.43 0.67 -23.64 16 18 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H 0.06 1.21 7.05 -51.93 -0.37 0.84 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.35 7.18 -51.93 -0.37 0.98 16 25 H 0.15 2.88 6.54 -52.48 -0.34 2.53 16 26 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.14 1.91 7.39 -52.48 -0.39 1.52 16 29 H 0.32 5.43 7.49 -39.29 -0.29 5.14 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 2.11 6.66 -51.93 -0.35 1.77 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -27.13 271.11 -7.52 -34.65 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.33 Total: 8.09 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.15 Total: -17.45 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.11 Total: -44.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.13 -7.52 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.835 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds