Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.91203 * 2 1 4 4 C 1.38648 * 120.79389 * 90.82148 * 3 2 1 5 5 C 1.38207 * 119.16697 * 179.80392 * 4 3 2 6 6 N 1.31869 * 120.75766 * 0.48290 * 5 4 3 7 7 C 1.31868 * 121.73031 * 359.74916 * 6 5 4 8 8 C 1.38208 * 120.76154 * 0.02562 * 7 6 5 9 9 N 1.47901 * 110.07880 * 238.78794 * 2 1 3 10 10 C 1.48537 * 105.82321 * 265.88747 * 9 2 1 11 11 C 1.54937 * 103.22666 * 320.79148 * 10 9 2 12 12 C 1.53998 * 109.91873 * 121.10407 * 2 1 3 13 13 H 1.09002 * 110.30791 * 237.23846 * 12 2 1 14 14 C 1.50701 * 110.30625 * 359.30637 * 12 2 1 15 15 H 1.07995 * 120.00154 * 358.61074 * 14 12 2 16 16 C 1.37880 * 119.99650 * 178.61247 * 14 12 2 17 17 N 1.31506 * 120.00344 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47103 * 89.99685 * 18 16 14 20 20 H 1.48495 * 109.46953 * 210.00033 * 18 16 14 21 21 H 1.48499 * 109.47007 * 329.99923 * 18 16 14 22 22 H 1.09006 * 109.46984 * 298.89978 * 1 2 3 23 23 H 1.08997 * 109.47407 * 58.89336 * 1 2 3 24 24 H 1.08999 * 109.47414 * 178.89752 * 1 2 3 25 25 H 1.08007 * 120.41621 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.62081 * 180.20929 * 5 4 3 27 27 H 1.07998 * 119.61936 * 179.97438 * 7 6 5 28 28 H 1.08004 * 120.41295 * 179.97438 * 8 7 6 29 29 H 1.00903 * 110.99869 * 145.37563 * 9 2 1 30 30 H 1.08993 * 110.66691 * 79.22711 * 10 9 2 31 31 H 1.09004 * 110.66677 * 202.36016 * 10 9 2 32 32 H 1.08995 * 110.72601 * 279.06037 * 11 10 9 33 33 H 1.09000 * 110.72575 * 155.77161 * 11 10 9 34 34 H 0.97001 * 120.00449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4169 0.0000 4 6 2.3010 2.0784 1.1909 5 6 2.7749 3.3761 1.1516 6 7 2.9727 3.9873 -0.0001 7 6 2.7339 3.3908 -1.1517 8 6 2.2631 2.0920 -1.1908 9 7 2.0377 -0.7199 -1.1881 10 6 2.2730 -2.1178 -0.7446 11 6 2.8578 -1.9443 0.6796 12 6 2.0546 -0.7480 1.2397 13 1 2.7036 -0.0983 1.8270 14 6 0.9041 -1.2360 2.0818 15 1 -0.1117 -1.0193 1.7860 16 6 1.1484 -1.9593 3.2300 17 7 2.3853 -2.2227 3.5905 18 14 -0.2778 -2.5649 4.2735 19 1 -0.6929 -3.9132 3.8097 20 1 0.1454 -2.6389 5.6950 21 1 -1.4195 -1.6241 4.1453 22 1 -0.3633 0.4967 0.8997 23 1 -0.3634 0.5309 -0.8798 24 1 -0.3634 -1.0274 -0.0198 25 1 2.1370 1.5846 2.1373 26 1 2.9813 3.8971 2.0747 27 1 2.9076 3.9237 -2.0749 28 1 2.0690 1.6091 -2.1372 29 1 2.8899 -0.3002 -1.5283 30 1 1.3360 -2.6735 -0.7107 31 1 2.9917 -2.6128 -1.3979 32 1 3.9208 -1.7076 0.6339 33 1 2.6861 -2.8386 1.2787 34 1 2.5572 -2.7318 4.3981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = 25.298289 kcal Electronic energy + Delta-G solvation = -16631.384551 eV Core-core repulsion = 14142.339318 eV Total energy + Delta-G solvation = -2489.045233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.51213 -39.51875 -34.80969 -33.97446 -32.21862 -31.21397 -30.45470 -26.93940 -26.37474 -24.33010 -23.86145 -21.67251 -20.34476 -18.41362 -17.95836 -17.08642 -16.58477 -16.32786 -15.87257 -15.34928 -14.95731 -14.79891 -14.41993 -14.14419 -13.74355 -13.68706 -13.27820 -12.93372 -12.66317 -12.41094 -12.25755 -11.89718 -11.81001 -11.72417 -11.24988 -10.69219 -10.43849 -10.34660 -10.30744 -9.97769 -9.43699 -8.09575 -6.17143 0.29049 0.37649 1.39992 1.42947 1.50603 2.44054 2.95624 3.22166 3.34812 3.64333 3.72718 4.08735 4.27632 4.33592 4.34407 4.47457 4.55225 4.72965 4.80884 4.84172 4.93280 4.98194 5.06693 5.15631 5.23530 5.35874 5.49535 5.53993 5.65332 5.80581 5.86444 5.88211 6.01375 6.42135 6.59821 6.92330 7.07417 7.50643 8.98639 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.009075 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.216832 B = 3084.751242 C = 3496.170281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.138 3.862 3 C -0.039 4.039 4 C -0.173 4.173 5 C 0.088 3.912 6 N -0.510 5.510 7 C 0.091 3.909 8 C -0.164 4.164 9 N -0.656 5.656 10 C 0.054 3.946 11 C -0.132 4.132 12 C 0.029 3.971 13 H 0.009 0.991 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.942 3.058 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.267 1.267 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.122 0.878 26 H 0.170 0.830 27 H 0.187 0.813 28 H 0.157 0.843 29 H 0.335 0.665 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 6.020 -8.717 10.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 C -0.048 4.048 4 C -0.194 4.194 5 C -0.067 4.067 6 N -0.219 5.219 7 C -0.065 4.065 8 C -0.184 4.184 9 N -0.284 5.284 10 C -0.075 4.075 11 C -0.172 4.172 12 C 0.009 3.991 13 H 0.027 0.973 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.769 3.231 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.191 1.191 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.140 0.860 26 H 0.187 0.813 27 H 0.203 0.797 28 H 0.174 0.826 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.628 6.686 -8.932 11.175 hybrid contribution 0.067 -1.541 1.882 2.433 sum -0.560 5.145 -7.050 8.746 Atomic orbital electron populations 1.21507 0.92812 1.01241 0.99612 1.20612 0.95959 0.88283 0.90424 1.20672 0.94222 0.96104 0.93779 1.22246 1.01019 0.96581 0.99512 1.22942 0.95130 0.91678 0.96977 1.67694 1.16728 1.38420 0.99082 1.23234 0.94294 0.92250 0.96772 1.22227 1.01001 0.96201 0.98948 1.62950 1.33407 1.02670 1.29327 1.22974 0.99997 0.90646 0.93883 1.22862 0.96292 1.01196 0.96856 1.19947 0.94588 0.92519 0.92002 0.97291 1.21869 0.94018 1.32996 1.06856 0.90570 1.25687 0.97175 0.96754 0.98902 1.70110 1.20179 1.40786 1.24940 0.85788 0.80485 0.78839 0.77969 1.20497 1.21710 1.19110 0.93396 0.93033 0.92776 0.85974 0.81290 0.79659 0.82585 0.84876 0.91409 0.89886 0.95762 0.93052 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.54 7.30 71.98 0.53 -3.02 16 2 C 0.14 5.27 0.99 2.92 0.00 5.27 16 3 C -0.04 -1.36 4.70 -19.67 -0.09 -1.46 16 4 C -0.17 -6.29 8.82 22.36 0.20 -6.09 16 5 C 0.09 2.80 11.18 84.68 0.95 3.75 16 6 N -0.51 -15.59 10.36 -195.84 -2.03 -17.62 16 7 C 0.09 2.39 11.18 84.68 0.95 3.34 16 8 C -0.16 -4.63 8.93 22.36 0.20 -4.43 16 9 N -0.66 -22.16 6.50 -462.78 -3.01 -25.17 16 10 C 0.05 1.98 7.54 86.65 0.65 2.63 16 11 C -0.13 -6.00 6.15 31.80 0.20 -5.80 16 12 C 0.03 1.37 2.09 -10.66 -0.02 1.34 16 13 H 0.01 0.48 5.76 -2.39 -0.01 0.46 16 14 C -0.52 -26.57 7.64 25.60 0.20 -26.38 16 15 H 0.08 3.79 4.70 -2.91 -0.01 3.77 16 16 C 0.01 0.70 5.09 84.66 0.43 1.13 16 17 N -0.92 -52.11 12.03 21.45 0.26 -51.85 16 18 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H 0.05 1.90 7.05 -2.38 -0.02 1.88 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 24 H 0.05 2.14 7.18 -2.39 -0.02 2.13 16 25 H 0.12 5.02 6.54 -2.91 -0.02 5.00 16 26 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.16 3.73 7.39 -2.91 -0.02 3.71 16 29 H 0.33 10.24 7.49 -89.69 -0.67 9.57 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 2.65 6.66 -2.39 -0.02 2.64 16 34 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -58.69 271.11 1.86 -56.83 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.44 Total: 22.89 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 4.18 Total: -29.71 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -4.78 Total: -94.64 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.69 1.86 -56.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.129 kcal (2) G-P(sol) polarization free energy of solvation -58.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds