Wall clock time and date at job start Mon Mar 30 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 110.06374 * 2 1 4 4 C 1.38653 * 120.78605 * 38.62254 * 3 2 1 5 5 C 1.38203 * 119.15747 * 179.75434 * 4 3 2 6 6 N 1.31876 * 120.76166 * 0.53424 * 5 4 3 7 7 C 1.31868 * 121.72831 * 359.74143 * 6 5 4 8 8 C 1.38201 * 120.76235 * 359.97322 * 7 6 5 9 9 N 1.47901 * 109.92144 * 238.79383 * 2 1 3 10 10 C 1.48538 * 105.81813 * 265.97767 * 9 2 1 11 11 C 1.54934 * 103.22741 * 320.78972 * 10 9 2 12 12 C 1.53995 * 109.91814 * 121.20013 * 2 1 3 13 13 H 1.09005 * 110.31037 * 359.21945 * 12 2 1 14 14 C 1.50692 * 110.31132 * 237.14651 * 12 2 1 15 15 H 1.07997 * 120.00338 * 354.58935 * 14 12 2 16 16 C 1.37878 * 120.00260 * 174.59040 * 14 12 2 17 17 N 1.31521 * 119.99954 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00442 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46932 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46976 * 119.99773 * 18 16 14 21 21 H 1.48497 * 109.47120 * 240.00021 * 18 16 14 22 22 H 1.08997 * 109.47188 * 298.79520 * 1 2 3 23 23 H 1.08994 * 109.46965 * 58.79923 * 1 2 3 24 24 H 1.09004 * 109.46432 * 178.79621 * 1 2 3 25 25 H 1.07994 * 120.41941 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.62142 * 180.29784 * 5 4 3 27 27 H 1.08000 * 119.61497 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.41774 * 180.02562 * 8 7 6 29 29 H 1.00899 * 110.99659 * 26.48903 * 9 2 1 30 30 H 1.08998 * 110.66127 * 202.35476 * 10 9 2 31 31 H 1.08998 * 110.80700 * 79.29313 * 10 9 2 32 32 H 1.09004 * 110.72561 * 279.06356 * 11 10 9 33 33 H 1.09001 * 110.87697 * 155.84628 * 11 10 9 34 34 H 0.96997 * 119.99940 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4156 0.0000 4 6 1.4164 2.4015 0.7435 5 6 1.9222 3.6875 0.7230 6 7 2.9844 3.9830 -0.0004 7 6 3.6061 3.0725 -0.7238 8 6 3.1611 1.7643 -0.7480 9 7 2.0340 -0.7204 -1.1893 10 6 2.2662 -2.1193 -0.7470 11 6 2.8537 -1.9482 0.6763 12 6 2.0546 -0.7500 1.2384 13 1 1.2225 -1.1028 1.8478 14 6 2.9536 0.1460 2.0507 15 1 3.2128 1.1277 1.6827 16 6 3.4454 -0.2875 3.2637 17 7 3.1294 -1.4828 3.7121 18 14 4.5604 0.8230 4.2703 19 1 4.7613 2.1063 3.5506 20 1 3.9334 1.0890 5.5899 21 1 5.8722 0.1566 4.4708 22 1 -0.3633 0.4950 0.9006 23 1 -0.3633 0.5323 -0.8790 24 1 -0.3632 -1.0275 -0.0216 25 1 0.5436 2.1665 1.3346 26 1 1.4397 4.4601 1.3032 27 1 4.4729 3.3523 -1.3040 28 1 3.6748 1.0229 -1.3421 29 1 1.3645 -0.6860 -1.9434 30 1 2.9823 -2.6158 -1.4018 31 1 1.3291 -2.6750 -0.7122 32 1 3.9173 -1.7143 0.6291 33 1 2.6829 -2.8416 1.2770 34 1 3.4756 -1.7879 4.5653 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:11 Heat of formation + Delta-G solvation = 38.543857 kcal Electronic energy + Delta-G solvation = -16845.761045 eV Core-core repulsion = 14357.290183 eV Total energy + Delta-G solvation = -2488.470862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91230 -37.83318 -32.80647 -32.52363 -30.50884 -29.42619 -29.06025 -25.98801 -23.87269 -22.59154 -22.26601 -20.10449 -18.81508 -16.81464 -15.89286 -15.34822 -15.26673 -14.60239 -14.48393 -13.93807 -13.25981 -13.05498 -12.79856 -12.31643 -12.07139 -12.01770 -11.87328 -11.16558 -11.03543 -10.87737 -10.71917 -10.63541 -10.35503 -9.82123 -9.39034 -9.02270 -8.67995 -8.44152 -8.36824 -8.28070 -7.97978 -6.05477 -4.05711 1.92386 2.13662 3.28880 3.37773 3.45367 4.43751 4.58504 4.75841 5.11890 5.25561 5.36544 5.57480 5.67826 5.75754 5.87588 5.93382 6.01857 6.06518 6.13045 6.22291 6.36580 6.46577 6.53755 6.54964 6.80896 7.00663 7.06620 7.18567 7.37090 7.45772 7.53110 7.83825 7.92496 7.97263 8.35777 8.67465 8.96099 9.59296 11.04923 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.014672 C = 0.009702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.911739 B = 1907.967704 C = 2885.273139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 C 0.041 3.959 4 C -0.163 4.163 5 C 0.082 3.918 6 N -0.506 5.506 7 C 0.078 3.922 8 C -0.150 4.150 9 N -0.661 5.661 10 C 0.033 3.967 11 C -0.098 4.098 12 C 0.059 3.941 13 H 0.040 0.960 14 C -0.508 4.508 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.882 3.118 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.322 0.678 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 2.255 -7.717 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 C 0.032 3.968 4 C -0.184 4.184 5 C -0.075 4.075 6 N -0.216 5.216 7 C -0.078 4.078 8 C -0.170 4.170 9 N -0.289 5.289 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.040 3.960 13 H 0.058 0.942 14 C -0.546 4.546 15 H 0.087 0.913 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.711 3.289 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.903 3.218 -7.538 8.695 hybrid contribution -0.550 -0.817 0.907 1.339 sum -3.454 2.401 -6.631 7.853 Atomic orbital electron populations 1.22421 0.96547 1.01348 1.01731 1.20838 0.91452 0.90951 0.93304 1.19774 0.92576 0.93794 0.90627 1.21865 1.02185 0.93816 1.00494 1.22431 0.93089 0.95253 0.96690 1.67504 1.08708 1.37499 1.07895 1.22546 0.98488 0.89948 0.96811 1.21941 0.97275 0.96938 1.00828 1.62981 1.47049 1.11413 1.07418 1.23106 0.98473 0.89010 0.98993 1.22502 1.00393 0.99660 0.91124 1.19540 0.95567 0.91766 0.89171 0.94173 1.21408 1.28706 1.01543 1.02970 0.91305 1.24931 0.96304 0.94921 0.97524 1.69968 1.44974 1.17753 1.20324 0.86659 0.80753 0.81279 0.80258 1.19620 1.21087 1.21076 0.91530 0.93502 0.92811 0.85620 0.84032 0.84061 0.84362 0.86313 0.91622 0.95406 0.92004 0.92295 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 7.75 37.16 0.29 -2.36 16 2 C 0.13 2.39 1.00 -131.68 -0.13 2.26 16 3 C 0.04 0.80 2.80 -104.31 -0.29 0.51 16 4 C -0.16 -3.07 8.15 -39.44 -0.32 -3.39 16 5 C 0.08 1.49 11.18 -17.55 -0.20 1.29 16 6 N -0.51 -9.75 10.36 -13.25 -0.14 -9.89 16 7 C 0.08 1.43 11.18 -17.55 -0.20 1.24 16 8 C -0.15 -2.85 9.00 -39.45 -0.35 -3.20 16 9 N -0.66 -11.43 5.75 -97.62 -0.56 -11.99 16 10 C 0.03 0.58 7.54 -1.90 -0.01 0.57 16 11 C -0.10 -2.16 6.10 -24.87 -0.15 -2.31 16 12 C 0.06 1.36 2.41 -90.42 -0.22 1.14 16 13 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 14 C -0.51 -13.26 7.45 -34.44 -0.26 -13.52 16 15 H 0.07 1.84 4.71 -52.49 -0.25 1.59 16 16 C 0.06 1.76 5.38 -17.82 -0.10 1.67 16 17 N -0.89 -25.05 12.91 55.43 0.72 -24.33 16 18 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.13 2.20 6.66 -52.49 -0.35 1.85 16 26 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.14 2.56 7.26 -52.49 -0.38 2.18 16 29 H 0.32 4.80 8.43 -39.29 -0.33 4.47 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.48 7.86 -51.93 -0.41 1.08 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 274.32 15.07 4.13 4.13 Total: -1.00 -28.73 274.32 -7.37 -36.10 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.56 Total: 5.43 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.94 Total: -16.10 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.02 Total: -46.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.73 -7.37 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.646 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds