Wall clock time and date at job start Mon Mar 30 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 110.06374 * 2 1 4 4 C 1.38653 * 120.78605 * 38.62254 * 3 2 1 5 5 C 1.38203 * 119.15747 * 179.75434 * 4 3 2 6 6 N 1.31876 * 120.76166 * 0.53424 * 5 4 3 7 7 C 1.31868 * 121.72831 * 359.74143 * 6 5 4 8 8 C 1.38201 * 120.76235 * 359.97322 * 7 6 5 9 9 N 1.47901 * 109.92144 * 238.79383 * 2 1 3 10 10 C 1.48538 * 105.81813 * 265.97767 * 9 2 1 11 11 C 1.54934 * 103.22741 * 320.78972 * 10 9 2 12 12 C 1.53995 * 109.91814 * 121.20013 * 2 1 3 13 13 H 1.09005 * 110.31037 * 359.21945 * 12 2 1 14 14 C 1.50692 * 110.31132 * 237.14651 * 12 2 1 15 15 H 1.07997 * 120.00338 * 354.58935 * 14 12 2 16 16 C 1.37878 * 120.00260 * 174.59040 * 14 12 2 17 17 N 1.31521 * 119.99954 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00442 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46932 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46976 * 119.99773 * 18 16 14 21 21 H 1.48497 * 109.47120 * 240.00021 * 18 16 14 22 22 H 1.08997 * 109.47188 * 298.79520 * 1 2 3 23 23 H 1.08994 * 109.46965 * 58.79923 * 1 2 3 24 24 H 1.09004 * 109.46432 * 178.79621 * 1 2 3 25 25 H 1.07994 * 120.41941 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.62142 * 180.29784 * 5 4 3 27 27 H 1.08000 * 119.61497 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.41774 * 180.02562 * 8 7 6 29 29 H 1.00899 * 110.99659 * 26.48903 * 9 2 1 30 30 H 1.08998 * 110.66127 * 202.35476 * 10 9 2 31 31 H 1.08998 * 110.80700 * 79.29313 * 10 9 2 32 32 H 1.09004 * 110.72561 * 279.06356 * 11 10 9 33 33 H 1.09001 * 110.87697 * 155.84628 * 11 10 9 34 34 H 0.96997 * 119.99940 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4156 0.0000 4 6 1.4164 2.4015 0.7435 5 6 1.9222 3.6875 0.7230 6 7 2.9844 3.9830 -0.0004 7 6 3.6061 3.0725 -0.7238 8 6 3.1611 1.7643 -0.7480 9 7 2.0340 -0.7204 -1.1893 10 6 2.2662 -2.1193 -0.7470 11 6 2.8537 -1.9482 0.6763 12 6 2.0546 -0.7500 1.2384 13 1 1.2225 -1.1028 1.8478 14 6 2.9536 0.1460 2.0507 15 1 3.2128 1.1277 1.6827 16 6 3.4454 -0.2875 3.2637 17 7 3.1294 -1.4828 3.7121 18 14 4.5604 0.8230 4.2703 19 1 4.7613 2.1063 3.5506 20 1 3.9334 1.0890 5.5899 21 1 5.8722 0.1566 4.4708 22 1 -0.3633 0.4950 0.9006 23 1 -0.3633 0.5323 -0.8790 24 1 -0.3632 -1.0275 -0.0216 25 1 0.5436 2.1665 1.3346 26 1 1.4397 4.4601 1.3032 27 1 4.4729 3.3523 -1.3040 28 1 3.6748 1.0229 -1.3421 29 1 1.3645 -0.6860 -1.9434 30 1 2.9823 -2.6158 -1.4018 31 1 1.3291 -2.6750 -0.7122 32 1 3.9173 -1.7143 0.6291 33 1 2.6829 -2.8416 1.2770 34 1 3.4756 -1.7879 4.5653 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:11 Heat of formation + Delta-G solvation = 20.457882 kcal Electronic energy + Delta-G solvation = -16846.545312 eV Core-core repulsion = 14357.290183 eV Total energy + Delta-G solvation = -2489.255129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38959 -39.34411 -34.79071 -33.99812 -31.93370 -31.11349 -30.57623 -27.64938 -25.59819 -24.04292 -23.78077 -21.74972 -20.39090 -18.60087 -17.54841 -16.84923 -16.77439 -16.39523 -16.04797 -15.44599 -14.80397 -14.54867 -14.30738 -13.86667 -13.76504 -13.52880 -13.41195 -12.99050 -12.67095 -12.59681 -12.47734 -12.24762 -11.96049 -11.62074 -11.16515 -10.87798 -10.48948 -10.17613 -9.85820 -9.79998 -9.36307 -8.13459 -6.15948 0.49476 0.66454 1.31872 1.36962 1.46502 2.40835 3.13780 3.20601 3.34751 3.78780 3.90790 4.19092 4.20775 4.35934 4.45849 4.51610 4.56836 4.63404 4.71140 4.79751 4.92855 5.00556 5.12308 5.17215 5.20175 5.37061 5.44078 5.56716 5.70667 5.74200 5.86734 6.07118 6.18919 6.37678 6.67581 6.92274 7.24569 7.50440 8.96999 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.014672 C = 0.009702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.911739 B = 1907.967704 C = 2885.273139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 C 0.024 3.976 4 C -0.174 4.174 5 C 0.076 3.924 6 N -0.521 5.521 7 C 0.074 3.926 8 C -0.159 4.159 9 N -0.659 5.659 10 C 0.047 3.953 11 C -0.096 4.096 12 C 0.053 3.947 13 H 0.012 0.988 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.932 3.068 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.284 1.284 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.133 0.867 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.141 0.859 29 H 0.341 0.659 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 2.961 -9.020 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 C 0.015 3.985 4 C -0.194 4.194 5 C -0.080 4.080 6 N -0.232 5.232 7 C -0.082 4.082 8 C -0.179 4.179 9 N -0.288 5.288 10 C -0.082 4.082 11 C -0.134 4.134 12 C 0.033 3.967 13 H 0.030 0.970 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.180 4.180 17 N -0.560 5.560 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.210 1.210 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.151 0.849 26 H 0.186 0.814 27 H 0.186 0.814 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.293 3.931 -8.854 10.232 hybrid contribution -0.427 -1.010 1.294 1.696 sum -3.720 2.921 -7.559 8.917 Atomic orbital electron populations 1.22350 0.94443 1.02094 1.02597 1.20640 0.93060 0.90448 0.91940 1.19960 0.93129 0.94123 0.91245 1.22047 1.02646 0.94096 1.00630 1.22899 0.92819 0.95817 0.96429 1.67587 1.09216 1.37921 1.08429 1.23001 0.99005 0.89604 0.96543 1.22061 0.97291 0.97454 1.01122 1.62908 1.47834 1.10862 1.07221 1.22991 0.99458 0.89624 0.96148 1.22295 0.98824 0.98289 0.94030 1.19462 0.94339 0.92295 0.90558 0.96996 1.21698 1.28078 1.01527 1.02941 0.91831 1.25527 0.97760 0.95908 0.98819 1.70059 1.46368 1.18947 1.20669 0.85897 0.79456 0.79532 0.79180 1.20273 1.20713 1.21037 0.92134 0.91102 0.92203 0.84883 0.81407 0.81382 0.84109 0.84163 0.89567 0.93655 0.94660 0.94340 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 7.75 71.98 0.56 -4.23 16 2 C 0.13 4.78 1.00 2.93 0.00 4.78 16 3 C 0.02 0.91 2.80 -19.67 -0.06 0.86 16 4 C -0.17 -6.29 8.15 22.36 0.18 -6.11 16 5 C 0.08 2.64 11.18 84.68 0.95 3.59 16 6 N -0.52 -19.08 10.36 -195.85 -2.03 -21.11 16 7 C 0.07 2.57 11.18 84.68 0.95 3.52 16 8 C -0.16 -5.80 9.00 22.36 0.20 -5.60 16 9 N -0.66 -21.18 5.75 -462.76 -2.66 -23.84 16 10 C 0.05 1.54 7.54 86.65 0.65 2.19 16 11 C -0.10 -4.23 6.10 31.80 0.19 -4.03 16 12 C 0.05 2.45 2.41 -10.66 -0.03 2.42 16 13 H 0.01 0.62 7.68 -2.38 -0.02 0.60 16 14 C -0.50 -26.42 7.45 25.60 0.19 -26.23 16 15 H 0.06 3.38 4.71 -2.91 -0.01 3.36 16 16 C 0.02 0.99 5.38 84.65 0.46 1.45 16 17 N -0.92 -52.67 12.91 21.45 0.28 -52.40 16 18 Si 0.93 44.84 29.54 68.60 2.03 46.87 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 22 H 0.06 1.92 6.77 -2.39 -0.02 1.90 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.13 4.50 6.66 -2.91 -0.02 4.48 16 26 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 27 H 0.17 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.14 4.97 7.26 -2.91 -0.02 4.95 16 29 H 0.34 8.99 8.43 -89.70 -0.76 8.24 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.03 1.71 7.86 -2.38 -0.02 1.69 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -61.08 274.32 2.21 -58.88 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.34 Total: 18.99 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 4.25 Total: -27.39 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -4.41 Total: -97.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.08 2.21 -58.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.335 kcal (2) G-P(sol) polarization free energy of solvation -61.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds