Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 110.06439 * 2 1 4 4 C 1.38648 * 120.78994 * 268.51735 * 3 2 1 5 5 C 1.38210 * 119.16197 * 179.75866 * 4 3 2 6 6 N 1.31863 * 120.76515 * 0.52676 * 5 4 3 7 7 C 1.31877 * 121.72522 * 359.74106 * 6 5 4 8 8 C 1.38207 * 120.76262 * 359.97438 * 7 6 5 9 9 N 1.47905 * 109.91865 * 121.20500 * 2 1 3 10 10 C 1.48531 * 105.81691 * 94.02342 * 9 2 1 11 11 C 1.54931 * 103.23198 * 39.20727 * 10 9 2 12 12 C 1.53997 * 109.91747 * 238.79530 * 2 1 3 13 13 H 1.08995 * 110.30830 * 122.85373 * 12 2 1 14 14 C 1.50695 * 110.30552 * 0.78745 * 12 2 1 15 15 H 1.08004 * 120.00546 * 0.27666 * 14 12 2 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 12 2 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 H 1.09002 * 109.47034 * 181.20666 * 1 2 3 23 23 H 1.09006 * 109.47114 * 301.20227 * 1 2 3 24 24 H 1.09001 * 109.47495 * 61.20572 * 1 2 3 25 25 H 1.08007 * 120.41979 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.61436 * 180.29385 * 5 4 3 27 27 H 1.08001 * 119.61440 * 179.97438 * 7 6 5 28 28 H 1.08000 * 120.41548 * 180.02562 * 8 7 6 29 29 H 1.00898 * 110.99765 * 333.50567 * 9 2 1 30 30 H 1.09005 * 110.66056 * 157.64302 * 10 9 2 31 31 H 1.08993 * 110.66587 * 280.59893 * 10 9 2 32 32 H 1.08997 * 110.73014 * 204.22723 * 11 10 9 33 33 H 1.09006 * 110.72263 * 80.93872 * 11 10 9 34 34 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 2.3194 2.0716 -1.1907 5 6 2.7876 3.3714 -1.1515 6 7 2.9852 3.9828 -0.0001 7 6 2.7421 3.3880 1.1516 8 6 2.2668 2.0908 1.1908 9 7 2.0338 -0.7205 1.1894 10 6 2.2660 -2.1193 0.7471 11 6 2.8535 -1.9483 -0.6762 12 6 2.0546 -0.7501 -1.2384 13 1 2.7048 -0.1021 -1.8259 14 6 0.9041 -1.2377 -2.0808 15 1 -0.1122 -1.0347 -1.7765 16 6 1.1489 -1.9375 -3.2433 17 7 0.1448 -2.3635 -3.9782 18 14 2.9066 -2.2818 -3.7736 19 1 3.3541 -3.5741 -3.1950 20 1 2.9713 -2.3541 -5.2555 21 1 3.7916 -1.1909 -3.2921 22 1 -0.3633 -1.0275 0.0216 23 1 -0.3634 0.5324 0.8791 24 1 -0.3634 0.4950 -0.9006 25 1 2.1643 1.5745 -2.1369 26 1 2.9977 3.8910 -2.0748 27 1 2.9165 3.9208 2.0747 28 1 2.0692 1.6093 2.1371 29 1 1.3644 -0.6859 1.9435 30 1 2.9822 -2.6158 1.4019 31 1 1.3279 -2.6732 0.7149 32 1 2.6803 -2.8424 -1.2751 33 1 3.9172 -1.7145 -0.6290 34 1 0.3171 -2.8561 -4.7959 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = 47.335950 kcal Electronic energy + Delta-G solvation = -16683.613309 eV Core-core repulsion = 14195.523700 eV Total energy + Delta-G solvation = -2488.089609 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11628 -38.19294 -32.87516 -32.60572 -30.94489 -29.81148 -29.63909 -25.32986 -24.60098 -23.05185 -22.33338 -20.39419 -18.78780 -16.90012 -16.33571 -15.63117 -15.32526 -14.98990 -14.32244 -14.05122 -13.57631 -13.39669 -13.20046 -12.62979 -12.38480 -12.00900 -11.60044 -11.51603 -11.36523 -10.89893 -10.66300 -10.43946 -10.24432 -9.84361 -9.67286 -9.07469 -8.96277 -8.90979 -8.70041 -8.62625 -8.04679 -6.15481 -4.16293 1.57860 1.74513 3.21352 3.32811 3.35133 4.24210 4.34084 4.67159 4.82198 5.07331 5.20837 5.36325 5.53783 5.61260 5.67470 5.81225 5.87867 5.94493 6.08798 6.14059 6.19954 6.27801 6.37092 6.54861 6.68339 6.69609 6.89097 6.91730 6.96561 7.13741 7.24616 7.35483 7.69549 7.83109 8.34630 8.40893 8.86915 9.46234 10.95538 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.009946 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.408955 B = 2814.538223 C = 3177.479071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.139 3.861 3 C 0.000 4.000 4 C -0.162 4.162 5 C 0.086 3.914 6 N -0.500 5.500 7 C 0.081 3.919 8 C -0.156 4.156 9 N -0.666 5.666 10 C 0.051 3.949 11 C -0.133 4.133 12 C 0.015 3.985 13 H 0.042 0.958 14 C -0.524 4.524 15 H 0.093 0.907 16 C 0.075 3.925 17 N -0.897 5.897 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.263 1.263 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.326 0.674 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 5.067 8.443 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 C -0.008 4.008 4 C -0.182 4.182 5 C -0.070 4.070 6 N -0.209 5.209 7 C -0.075 4.075 8 C -0.176 4.176 9 N -0.294 5.294 10 C -0.078 4.078 11 C -0.171 4.171 12 C -0.004 4.004 13 H 0.060 0.940 14 C -0.562 4.562 15 H 0.110 0.890 16 C -0.127 4.127 17 N -0.535 5.535 18 Si 0.700 3.300 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.188 1.188 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.163 0.837 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.467 6.048 8.246 11.159 hybrid contribution -0.297 -1.633 -0.500 1.733 sum 4.170 4.415 7.746 9.843 Atomic orbital electron populations 1.22308 0.94519 1.02416 1.00727 1.20474 0.93370 0.89155 0.92143 1.20330 0.92585 0.95389 0.92546 1.22320 0.99972 0.95843 1.00100 1.22645 0.96146 0.92291 0.95900 1.67574 1.16469 1.38259 0.98628 1.22597 0.96474 0.92555 0.95896 1.21916 1.01209 0.95361 0.99127 1.63099 1.47179 1.11575 1.07542 1.22815 0.99256 0.89270 0.96439 1.22911 0.98074 1.00847 0.95283 1.20156 0.96042 0.92474 0.91728 0.93981 1.21395 0.93740 1.35197 1.05842 0.88969 1.24988 0.96458 0.95089 0.96180 1.69885 1.30771 1.37799 1.15035 0.87028 0.86289 0.79436 0.77287 1.20327 1.21958 1.18764 0.91233 0.95091 0.90809 0.83739 0.83308 0.83631 0.85182 0.85859 0.91620 0.93751 0.91288 0.93541 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 6.93 37.15 0.26 -2.35 16 2 C 0.14 2.61 0.99 -131.68 -0.13 2.48 16 3 C 0.00 0.00 4.88 -104.32 -0.51 -0.50 16 4 C -0.16 -2.90 8.83 -39.44 -0.35 -3.25 16 5 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 6 N -0.50 -8.29 10.36 -13.25 -0.14 -8.43 16 7 C 0.08 1.22 11.18 -17.54 -0.20 1.03 16 8 C -0.16 -2.44 9.42 -39.44 -0.37 -2.82 16 9 N -0.67 -11.22 6.10 -97.63 -0.60 -11.82 16 10 C 0.05 0.90 7.54 -1.90 -0.01 0.89 16 11 C -0.13 -2.75 5.15 -24.87 -0.13 -2.88 16 12 C 0.02 0.34 1.63 -90.42 -0.15 0.19 16 13 H 0.04 0.97 4.66 -51.93 -0.24 0.73 16 14 C -0.52 -13.33 8.20 -34.44 -0.28 -13.61 16 15 H 0.09 2.48 4.94 -52.48 -0.26 2.22 16 16 C 0.07 2.03 5.36 -17.82 -0.10 1.93 16 17 N -0.90 -26.01 13.96 55.43 0.77 -25.24 16 18 Si 0.87 20.78 24.84 -169.99 -4.22 16.56 16 19 H -0.28 -6.50 6.97 56.52 0.39 -6.11 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.09 6.48 56.52 0.37 -5.72 16 22 H 0.07 1.36 7.17 -51.93 -0.37 0.99 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.48 7.06 -51.93 -0.37 1.12 16 25 H 0.14 2.71 6.50 -52.48 -0.34 2.37 16 26 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 27 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.13 1.80 7.59 -52.49 -0.40 1.40 16 29 H 0.33 4.78 8.43 -39.29 -0.33 4.45 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.53 5.43 -51.93 -0.28 1.25 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 265.90 15.07 4.01 4.01 Total: -1.00 -28.57 265.90 -6.64 -35.22 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.31 Total: 7.38 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.16 Total: -17.69 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.04 Total: -45.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.22 Total: 16.56 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.57 -6.64 -35.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.554 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds