Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 110.06439 * 2 1 4 4 C 1.38648 * 120.78994 * 268.51735 * 3 2 1 5 5 C 1.38210 * 119.16197 * 179.75866 * 4 3 2 6 6 N 1.31863 * 120.76515 * 0.52676 * 5 4 3 7 7 C 1.31877 * 121.72522 * 359.74106 * 6 5 4 8 8 C 1.38207 * 120.76262 * 359.97438 * 7 6 5 9 9 N 1.47905 * 109.91865 * 121.20500 * 2 1 3 10 10 C 1.48531 * 105.81691 * 94.02342 * 9 2 1 11 11 C 1.54931 * 103.23198 * 39.20727 * 10 9 2 12 12 C 1.53997 * 109.91747 * 238.79530 * 2 1 3 13 13 H 1.08995 * 110.30830 * 122.85373 * 12 2 1 14 14 C 1.50695 * 110.30552 * 0.78745 * 12 2 1 15 15 H 1.08004 * 120.00546 * 0.27666 * 14 12 2 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 12 2 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 H 1.09002 * 109.47034 * 181.20666 * 1 2 3 23 23 H 1.09006 * 109.47114 * 301.20227 * 1 2 3 24 24 H 1.09001 * 109.47495 * 61.20572 * 1 2 3 25 25 H 1.08007 * 120.41979 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.61436 * 180.29385 * 5 4 3 27 27 H 1.08001 * 119.61440 * 179.97438 * 7 6 5 28 28 H 1.08000 * 120.41548 * 180.02562 * 8 7 6 29 29 H 1.00898 * 110.99765 * 333.50567 * 9 2 1 30 30 H 1.09005 * 110.66056 * 157.64302 * 10 9 2 31 31 H 1.08993 * 110.66587 * 280.59893 * 10 9 2 32 32 H 1.08997 * 110.73014 * 204.22723 * 11 10 9 33 33 H 1.09006 * 110.72263 * 80.93872 * 11 10 9 34 34 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 2.3194 2.0716 -1.1907 5 6 2.7876 3.3714 -1.1515 6 7 2.9852 3.9828 -0.0001 7 6 2.7421 3.3880 1.1516 8 6 2.2668 2.0908 1.1908 9 7 2.0338 -0.7205 1.1894 10 6 2.2660 -2.1193 0.7471 11 6 2.8535 -1.9483 -0.6762 12 6 2.0546 -0.7501 -1.2384 13 1 2.7048 -0.1021 -1.8259 14 6 0.9041 -1.2377 -2.0808 15 1 -0.1122 -1.0347 -1.7765 16 6 1.1489 -1.9375 -3.2433 17 7 0.1448 -2.3635 -3.9782 18 14 2.9066 -2.2818 -3.7736 19 1 3.3541 -3.5741 -3.1950 20 1 2.9713 -2.3541 -5.2555 21 1 3.7916 -1.1909 -3.2921 22 1 -0.3633 -1.0275 0.0216 23 1 -0.3634 0.5324 0.8791 24 1 -0.3634 0.4950 -0.9006 25 1 2.1643 1.5745 -2.1369 26 1 2.9977 3.8910 -2.0748 27 1 2.9165 3.9208 2.0747 28 1 2.0692 1.6093 2.1371 29 1 1.3644 -0.6859 1.9435 30 1 2.9822 -2.6158 1.4019 31 1 1.3279 -2.6732 0.7149 32 1 2.6803 -2.8424 -1.2751 33 1 3.9172 -1.7145 -0.6290 34 1 0.3171 -2.8561 -4.7959 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = 27.830265 kcal Electronic energy + Delta-G solvation = -16684.459139 eV Core-core repulsion = 14195.523700 eV Total energy + Delta-G solvation = -2488.935439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.47377 -39.62582 -34.79867 -34.01481 -32.34158 -31.38676 -31.11612 -26.95375 -26.27983 -24.33333 -23.77892 -21.96462 -20.35321 -18.53737 -17.99704 -17.12807 -16.74388 -16.26865 -15.93258 -15.66419 -15.14355 -14.89190 -14.42737 -14.24538 -13.92632 -13.63105 -13.28497 -13.17882 -12.82040 -12.44725 -12.31140 -12.12781 -11.87911 -11.57517 -11.40276 -10.81442 -10.72082 -10.34669 -10.30005 -9.93474 -9.45018 -8.25344 -6.27448 0.34234 0.44182 1.29397 1.35774 1.43381 2.33939 2.98300 3.07702 3.27685 3.68510 3.79779 3.97855 4.19662 4.23861 4.32575 4.37881 4.40362 4.48299 4.63956 4.79702 4.86254 4.87589 4.97567 5.07429 5.15634 5.20977 5.24398 5.38653 5.51764 5.53214 5.71245 5.91979 5.93701 6.36409 6.55220 6.80491 7.11684 7.37691 8.88624 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.009946 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.408955 B = 2814.538223 C = 3177.479071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 C -0.017 4.017 4 C -0.183 4.183 5 C 0.087 3.913 6 N -0.512 5.512 7 C 0.086 3.914 8 C -0.152 4.152 9 N -0.654 5.654 10 C 0.057 3.943 11 C -0.137 4.137 12 C 0.009 3.991 13 H 0.032 0.968 14 C -0.510 4.510 15 H 0.069 0.931 16 C 0.021 3.979 17 N -0.946 5.946 18 Si 0.924 3.076 19 H -0.269 1.269 20 H -0.299 1.299 21 H -0.252 1.252 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.124 0.876 26 H 0.170 0.830 27 H 0.183 0.817 28 H 0.153 0.847 29 H 0.344 0.656 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 6.033 10.889 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 C -0.026 4.026 4 C -0.203 4.203 5 C -0.069 4.069 6 N -0.222 5.222 7 C -0.070 4.070 8 C -0.171 4.171 9 N -0.283 5.283 10 C -0.072 4.072 11 C -0.176 4.176 12 C -0.010 4.010 13 H 0.050 0.950 14 C -0.548 4.548 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.587 5.587 18 Si 0.751 3.249 19 H -0.194 1.194 20 H -0.226 1.226 21 H -0.176 1.176 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.142 0.858 26 H 0.187 0.813 27 H 0.200 0.800 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.994 7.023 10.719 14.148 hybrid contribution -0.824 -1.861 -1.199 2.362 sum 5.170 5.162 9.520 12.001 Atomic orbital electron populations 1.22165 0.94755 1.01349 1.00817 1.20274 0.93092 0.89856 0.91437 1.20325 0.93690 0.94969 0.93569 1.22263 1.01690 0.96837 0.99528 1.22920 0.95357 0.91685 0.96950 1.67677 1.16861 1.38530 0.99112 1.23212 0.94680 0.92425 0.96693 1.22123 1.00449 0.95568 0.98988 1.63105 1.47456 1.10752 1.06994 1.22804 0.99494 0.89843 0.95093 1.22857 0.98556 0.99169 0.96984 1.20106 0.94781 0.93340 0.92808 0.94990 1.21670 0.94150 1.33300 1.05710 0.91317 1.25678 0.99679 0.95600 0.96667 1.70018 1.32811 1.39943 1.15907 0.86165 0.82500 0.79860 0.76425 1.19406 1.22589 1.17595 0.92974 0.92054 0.93466 0.85794 0.81292 0.79969 0.82899 0.83935 0.88647 0.94442 0.93130 0.92596 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 6.93 71.98 0.50 -4.32 16 2 C 0.14 5.21 0.99 2.92 0.00 5.22 16 3 C -0.02 -0.57 4.88 -19.67 -0.10 -0.67 16 4 C -0.18 -6.43 8.83 22.36 0.20 -6.23 16 5 C 0.09 2.69 11.18 84.68 0.95 3.63 16 6 N -0.51 -15.56 10.36 -195.83 -2.03 -17.59 16 7 C 0.09 2.26 11.18 84.68 0.95 3.21 16 8 C -0.15 -4.21 9.42 22.36 0.21 -4.00 16 9 N -0.65 -20.03 6.10 -462.80 -2.83 -22.86 16 10 C 0.06 1.85 7.54 86.65 0.65 2.50 16 11 C -0.14 -5.49 5.15 31.80 0.16 -5.33 16 12 C 0.01 0.39 1.63 -10.66 -0.02 0.38 16 13 H 0.03 1.47 4.66 -2.39 -0.01 1.46 16 14 C -0.51 -26.65 8.20 25.60 0.21 -26.44 16 15 H 0.07 3.86 4.94 -2.91 -0.01 3.84 16 16 C 0.02 1.16 5.36 84.66 0.45 1.62 16 17 N -0.95 -56.91 13.96 21.45 0.30 -56.61 16 18 Si 0.92 43.53 24.84 68.60 1.70 45.24 16 19 H -0.27 -12.17 6.97 99.48 0.69 -11.48 16 20 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 21 H -0.25 -11.29 6.48 99.48 0.65 -10.64 16 22 H 0.05 2.05 7.17 -2.39 -0.02 2.03 16 23 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16 24 H 0.05 1.94 7.06 -2.39 -0.02 1.93 16 25 H 0.12 4.79 6.50 -2.91 -0.02 4.77 16 26 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 27 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.15 3.50 7.59 -2.91 -0.02 3.48 16 29 H 0.34 8.75 8.43 -89.70 -0.76 7.99 16 30 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 2.20 5.43 -2.39 -0.01 2.18 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -62.17 265.90 1.60 -60.57 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.28 Total: 21.68 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.17 Total: -30.43 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -4.55 Total: -97.06 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.70 Total: 45.24 kcal Total: -62.17 1.60 -60.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.404 kcal (2) G-P(sol) polarization free energy of solvation -62.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds