Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47102 * 269.99706 * 3 2 1 5 5 H 1.48499 * 109.47430 * 29.99602 * 3 2 1 6 6 H 1.48499 * 109.47281 * 150.00272 * 3 2 1 7 7 C 1.38715 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00700 * 0.02562 * 7 2 1 9 9 O 1.34600 * 119.99869 * 179.97438 * 7 2 1 10 10 N 1.21799 * 117.00115 * 180.02562 * 9 7 2 11 11 N 1.28164 * 119.24694 * 90.00484 * 10 9 7 12 12 N 1.28353 * 124.99722 * 179.97438 * 11 10 9 13 13 C 1.35438 * 121.38214 * 0.02562 * 12 11 10 14 14 C 1.39566 * 122.54530 * 180.02562 * 13 12 11 15 15 C 1.36730 * 119.50536 * 179.97438 * 14 13 12 16 16 C 1.38898 * 121.05427 * 0.02562 * 15 14 13 17 17 C 1.36861 * 120.77709 * 359.97438 * 16 15 14 18 18 C 1.39163 * 119.33539 * 0.02562 * 17 16 15 19 19 C 1.35436 * 119.25012 * 269.98101 * 10 9 7 20 20 O 1.21806 * 121.59962 * 359.97438 * 19 10 9 21 21 H 0.96999 * 119.99726 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.25214 * 359.93553 * 14 13 12 23 23 H 1.08002 * 119.47334 * 180.02562 * 15 14 13 24 24 H 1.08001 * 119.61202 * 180.02562 * 16 15 14 25 25 H 1.08000 * 120.33722 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0091 -1.2013 0.0005 8 1 1.4692 -2.1366 0.0005 9 8 3.3551 -1.2013 0.0000 10 7 3.9081 -2.2866 0.0000 11 7 4.1920 -2.8447 -1.1182 12 7 4.7722 -3.9824 -1.2468 13 6 5.1438 -4.7106 -0.1670 14 6 5.7762 -5.9497 -0.2786 15 6 6.1250 -6.6322 0.8538 16 6 5.8594 -6.1123 2.1141 17 6 5.2405 -4.8998 2.2553 18 6 4.8750 -4.1844 1.1189 19 6 4.2094 -2.8758 1.1817 20 8 3.9411 -2.3465 2.2455 21 1 -0.4850 0.8401 -0.0004 22 1 5.9881 -6.3668 -1.2520 23 1 6.6148 -7.5908 0.7668 24 1 6.1454 -6.6710 2.9930 25 1 5.0371 -4.5024 3.2387 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308583.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = 99.891372 kcal Electronic energy + Delta-G solvation = -15738.226805 eV Core-core repulsion = 12915.324071 eV Total energy + Delta-G solvation = -2822.902735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.66643 -39.92788 -37.90800 -37.38887 -33.17852 -32.11720 -31.27383 -30.48145 -26.36990 -25.79808 -23.97792 -22.35186 -19.96173 -19.65778 -18.89392 -17.90304 -16.19409 -16.01294 -15.10099 -15.02171 -14.52372 -14.05858 -13.51011 -13.34753 -12.82778 -12.60179 -12.47417 -12.32742 -12.13378 -11.80371 -10.90616 -10.83356 -10.38787 -10.04068 -9.80556 -9.56198 -9.29313 -8.68695 -7.98782 -6.42158 -4.28768 0.31792 0.71185 2.03702 2.27543 2.79539 3.23640 3.27734 3.40590 3.86724 3.92403 4.23052 4.26513 4.62748 4.75815 4.95214 5.07388 5.17007 5.41363 5.74744 5.79665 5.90484 6.03423 6.23436 6.37264 6.66702 7.35290 7.69345 8.06520 8.85959 8.93921 9.73724 10.67028 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049504 B = 0.007576 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.477652 B = 3695.144447 C = 3917.228659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.082 3.918 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.437 4.437 8 H 0.100 0.900 9 O -0.030 6.030 10 N -0.176 5.176 11 N 0.067 4.933 12 N -0.256 5.256 13 C 0.092 3.908 14 C -0.094 4.094 15 C -0.079 4.079 16 C -0.131 4.131 17 C -0.041 4.041 18 C -0.178 4.178 19 C 0.491 3.509 20 O -0.466 6.466 21 H 0.281 0.719 22 H 0.145 0.855 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -11.322 1.592 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.123 4.123 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.514 4.514 8 H 0.118 0.882 9 O -0.046 6.046 10 N -0.023 5.023 11 N 0.074 4.926 12 N -0.147 5.147 13 C -0.020 4.020 14 C -0.116 4.116 15 C -0.098 4.098 16 C -0.152 4.152 17 C -0.061 4.061 18 C -0.189 4.189 19 C 0.283 3.717 20 O -0.333 6.333 21 H 0.091 0.909 22 H 0.163 0.837 23 H 0.153 0.847 24 H 0.152 0.848 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.397 -10.415 1.220 15.488 hybrid contribution 0.010 0.490 1.207 1.303 sum 11.407 -9.925 2.427 15.314 Atomic orbital electron populations 1.69645 1.05311 1.28527 1.48291 1.24106 0.94827 0.98444 0.94907 0.86242 0.80406 0.81509 0.79211 1.19337 1.20243 1.18306 1.21102 0.75917 0.97379 1.57036 0.88213 1.84469 1.22845 1.05282 1.91982 1.44272 1.41200 1.13557 1.03281 1.76444 1.01134 1.03312 1.11733 1.74590 1.17220 0.98792 1.24086 1.20100 0.96796 0.96226 0.88921 1.20585 0.98533 0.92405 1.00103 1.21069 0.97151 0.99577 0.92000 1.20990 1.00329 0.95782 0.98050 1.20755 0.93933 0.93516 0.97855 1.20788 1.06144 0.96331 0.95657 1.19907 0.81162 0.85659 0.84927 1.90886 1.50788 1.64163 1.27495 0.90879 0.83719 0.84695 0.84823 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.96 55.48 0.77 -25.28 15 2 C 0.08 2.38 5.50 -17.49 -0.10 2.28 15 3 Si 0.90 22.06 28.62 -169.99 -4.86 17.20 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.26 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.44 -12.88 10.42 30.91 0.32 -12.56 15 8 H 0.10 3.12 8.06 -52.49 -0.42 2.70 15 9 O -0.03 -0.82 8.19 -4.92 -0.04 -0.86 15 10 N -0.18 -4.29 3.17 30.47 0.10 -4.19 15 11 N 0.07 1.49 12.25 60.35 0.74 2.23 15 12 N -0.26 -4.86 11.66 32.27 0.38 -4.48 15 13 C 0.09 1.54 6.73 -84.53 -0.57 0.97 15 14 C -0.09 -1.12 10.02 -39.63 -0.40 -1.52 15 15 C -0.08 -0.75 9.95 -39.88 -0.40 -1.14 15 16 C -0.13 -1.36 9.97 -39.84 -0.40 -1.75 15 17 C -0.04 -0.58 9.68 -39.74 -0.38 -0.97 15 18 C -0.18 -3.21 5.90 -104.77 -0.62 -3.83 15 19 C 0.49 11.24 7.69 -12.43 -0.10 11.14 15 20 O -0.47 -11.77 17.16 -15.25 -0.26 -12.03 15 21 H 0.28 7.64 8.31 -40.82 -0.34 7.30 15 22 H 0.15 1.37 8.06 -52.49 -0.42 0.95 15 23 H 0.14 0.78 8.06 -52.49 -0.42 0.36 15 24 H 0.13 0.94 8.06 -52.49 -0.42 0.52 15 25 H 0.14 1.88 7.90 -52.49 -0.41 1.47 15 LS Contribution 240.64 15.07 3.63 3.63 Total: -1.00 -32.49 240.64 -3.43 -35.92 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -1.24 Total: -4.74 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.63 Total: -7.39 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 1.99 Total: -31.73 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.30 Total: -12.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.49 -3.43 -35.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308583.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.813 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds