Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47102 * 269.99706 * 3 2 1 5 5 H 1.48499 * 109.47430 * 29.99602 * 3 2 1 6 6 H 1.48499 * 109.47281 * 150.00272 * 3 2 1 7 7 C 1.38715 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00700 * 0.02562 * 7 2 1 9 9 O 1.34600 * 119.99869 * 179.97438 * 7 2 1 10 10 N 1.21799 * 117.00115 * 180.02562 * 9 7 2 11 11 N 1.28164 * 119.24694 * 90.00484 * 10 9 7 12 12 N 1.28353 * 124.99722 * 179.97438 * 11 10 9 13 13 C 1.35438 * 121.38214 * 0.02562 * 12 11 10 14 14 C 1.39566 * 122.54530 * 180.02562 * 13 12 11 15 15 C 1.36730 * 119.50536 * 179.97438 * 14 13 12 16 16 C 1.38898 * 121.05427 * 0.02562 * 15 14 13 17 17 C 1.36861 * 120.77709 * 359.97438 * 16 15 14 18 18 C 1.39163 * 119.33539 * 0.02562 * 17 16 15 19 19 C 1.35436 * 119.25012 * 269.98101 * 10 9 7 20 20 O 1.21806 * 121.59962 * 359.97438 * 19 10 9 21 21 H 0.96999 * 119.99726 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.25214 * 359.93553 * 14 13 12 23 23 H 1.08002 * 119.47334 * 180.02562 * 15 14 13 24 24 H 1.08001 * 119.61202 * 180.02562 * 16 15 14 25 25 H 1.08000 * 120.33722 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0091 -1.2013 0.0005 8 1 1.4692 -2.1366 0.0005 9 8 3.3551 -1.2013 0.0000 10 7 3.9081 -2.2866 0.0000 11 7 4.1920 -2.8447 -1.1182 12 7 4.7722 -3.9824 -1.2468 13 6 5.1438 -4.7106 -0.1670 14 6 5.7762 -5.9497 -0.2786 15 6 6.1250 -6.6322 0.8538 16 6 5.8594 -6.1123 2.1141 17 6 5.2405 -4.8998 2.2553 18 6 4.8750 -4.1844 1.1189 19 6 4.2094 -2.8758 1.1817 20 8 3.9411 -2.3465 2.2455 21 1 -0.4850 0.8401 -0.0004 22 1 5.9881 -6.3668 -1.2520 23 1 6.6148 -7.5908 0.7668 24 1 6.1454 -6.6710 2.9930 25 1 5.0371 -4.5024 3.2387 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308583.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = 76.451105 kcal Electronic energy + Delta-G solvation = -15739.243251 eV Core-core repulsion = 12915.324071 eV Total energy + Delta-G solvation = -2823.919181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.35465 -41.37167 -39.57441 -38.80116 -35.11374 -33.87430 -32.49345 -31.88496 -28.27103 -27.27472 -25.51169 -23.56543 -21.77852 -21.08591 -20.78845 -19.42466 -17.91097 -17.51559 -16.50737 -16.34395 -16.05332 -15.37537 -15.18318 -15.03244 -14.74945 -14.60633 -13.90800 -13.72478 -13.26675 -13.07278 -12.81105 -12.71626 -12.05681 -11.80569 -11.37207 -11.26270 -10.77199 -10.38352 -9.42650 -8.62717 -6.53966 -1.04465 -0.51741 0.63053 0.70539 1.28111 1.31678 1.43889 1.47648 2.20592 2.42563 2.65871 2.74508 2.99342 3.42647 3.75911 3.82001 4.12622 4.18388 4.47861 4.57783 4.89191 4.95962 5.14614 5.24754 5.27412 5.69509 5.71960 6.08210 6.65047 7.34297 7.71098 8.51131 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049504 B = 0.007576 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.477652 B = 3695.144447 C = 3917.228659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.031 3.969 3 Si 0.970 3.030 4 H -0.250 1.250 5 H -0.255 1.255 6 H -0.270 1.270 7 C -0.445 4.445 8 H 0.059 0.941 9 O -0.043 6.043 10 N -0.204 5.204 11 N 0.019 4.981 12 N -0.221 5.221 13 C 0.048 3.952 14 C -0.073 4.073 15 C -0.055 4.055 16 C -0.090 4.090 17 C -0.063 4.063 18 C -0.189 4.189 19 C 0.475 3.525 20 O -0.517 6.517 21 H 0.290 0.710 22 H 0.178 0.822 23 H 0.196 0.804 24 H 0.184 0.816 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.656 -14.359 1.889 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.174 1.174 5 H -0.179 1.179 6 H -0.195 1.195 7 C -0.523 4.523 8 H 0.077 0.923 9 O -0.058 6.058 10 N -0.052 5.052 11 N 0.028 4.972 12 N -0.112 5.112 13 C -0.065 4.065 14 C -0.096 4.096 15 C -0.074 4.074 16 C -0.110 4.110 17 C -0.082 4.082 18 C -0.200 4.200 19 C 0.271 3.729 20 O -0.389 6.389 21 H 0.100 0.900 22 H 0.195 0.805 23 H 0.213 0.787 24 H 0.202 0.798 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.280 -13.464 1.466 19.681 hybrid contribution -0.665 0.891 1.161 1.608 sum 13.615 -12.573 2.627 18.718 Atomic orbital electron populations 1.69724 1.06755 1.30129 1.49023 1.25056 0.95814 1.01995 0.94143 0.85260 0.78476 0.77031 0.80220 1.17350 1.17917 1.19487 1.20963 0.77517 0.96235 1.57537 0.92346 1.84397 1.21193 1.07516 1.92657 1.44363 1.42626 1.13857 1.04325 1.76394 1.04670 1.05110 1.11054 1.74365 1.13560 0.97488 1.25822 1.20485 1.00048 0.98428 0.87499 1.21166 0.95636 0.89765 1.03016 1.21795 0.94528 1.00855 0.90195 1.21670 0.95471 0.93190 1.00624 1.21026 0.95388 0.95208 0.96620 1.20795 1.06928 0.94363 0.97930 1.20717 0.81087 0.87179 0.83950 1.90816 1.53662 1.65782 1.28614 0.89959 0.80485 0.78694 0.79827 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.96 21.63 0.30 -56.28 15 2 C 0.03 1.88 5.50 84.85 0.47 2.35 15 3 Si 0.97 47.02 28.62 68.60 1.96 48.98 15 4 H -0.25 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 6 H -0.27 -13.49 7.11 99.48 0.71 -12.78 15 7 C -0.45 -28.23 10.42 67.93 0.71 -27.52 15 8 H 0.06 4.03 8.06 -2.91 -0.02 4.01 15 9 O -0.04 -2.52 8.19 84.54 0.69 -1.83 15 10 N -0.20 -10.73 3.17 -175.31 -0.56 -11.28 15 11 N 0.02 0.89 12.25 37.02 0.45 1.34 15 12 N -0.22 -8.48 11.66 -51.82 -0.60 -9.08 15 13 C 0.05 1.52 6.73 39.72 0.27 1.79 15 14 C -0.07 -1.37 10.02 22.24 0.22 -1.14 15 15 C -0.05 -0.62 9.95 22.07 0.22 -0.40 15 16 C -0.09 -1.28 9.97 22.10 0.22 -1.06 15 17 C -0.06 -1.63 9.68 22.17 0.21 -1.42 15 18 C -0.19 -6.85 5.90 -19.96 -0.12 -6.97 15 19 C 0.48 23.29 7.69 86.42 0.66 23.95 15 20 O -0.52 -28.20 17.16 14.76 0.25 -27.95 15 21 H 0.29 16.21 8.31 -92.71 -0.77 15.44 15 22 H 0.18 2.22 8.06 -2.91 -0.02 2.20 15 23 H 0.20 0.18 8.06 -2.91 -0.02 0.16 15 24 H 0.18 0.99 8.06 -2.91 -0.02 0.96 15 25 H 0.14 3.63 7.90 -2.91 -0.02 3.61 15 Total: -1.00 -80.69 240.64 6.60 -74.09 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: 1.23 Total: -7.57 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 2.87 Total: -10.42 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -0.40 Total: -75.30 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: 0.95 Total: -29.77 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.96 Total: 48.98 kcal Total: -80.69 6.60 -74.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308583.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.538 kcal (2) G-P(sol) polarization free energy of solvation -80.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds