Wall clock time and date at job start Mon Mar 30 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47154 * 2 1 4 4 H 1.08007 * 119.99898 * 1.12087 * 3 2 1 5 5 C 1.37870 * 120.00402 * 181.12587 * 3 2 1 6 6 N 1.31514 * 120.00205 * 188.34843 * 5 3 2 7 7 Si 1.86803 * 119.99989 * 8.34301 * 5 3 2 8 8 H 1.48501 * 109.46603 * 86.14497 * 7 5 3 9 9 H 1.48497 * 109.47153 * 206.14225 * 7 5 3 10 10 H 1.48491 * 109.47076 * 326.14399 * 7 5 3 11 11 N 1.46901 * 109.47423 * 240.00031 * 2 1 3 12 12 C 1.46901 * 110.99831 * 59.99784 * 11 2 1 13 13 C 1.53007 * 117.49518 * 223.74949 * 12 11 2 14 14 C 1.53003 * 117.49909 * 155.09140 * 12 11 2 15 15 C 1.50699 * 109.47379 * 119.99889 * 2 1 3 16 16 C 1.38678 * 120.41917 * 273.02230 * 15 2 1 17 17 C 1.38623 * 118.42237 * 180.02562 * 16 15 2 18 18 C 1.38225 * 119.15974 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76750 * 0.02619 * 18 17 16 20 20 C 1.31888 * 121.72170 * 359.96874 * 19 18 17 21 21 H 1.08998 * 109.47434 * 299.99714 * 1 2 3 22 22 H 1.08997 * 109.47187 * 60.00315 * 1 2 3 23 23 H 1.09001 * 109.46931 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00092 * 179.97438 * 6 5 3 25 25 H 1.00898 * 111.00109 * 183.94863 * 11 2 1 26 26 H 1.08999 * 115.54898 * 9.41679 * 12 11 2 27 27 H 1.08988 * 117.49862 * 359.97438 * 13 12 11 28 28 H 1.08999 * 117.49337 * 145.02292 * 13 12 11 29 29 H 1.09000 * 117.49617 * 214.98016 * 14 12 11 30 30 H 1.08998 * 117.49578 * 359.97438 * 14 12 11 31 31 H 1.08002 * 120.78656 * 0.30418 * 16 15 2 32 32 H 1.08001 * 120.42031 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.62035 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.61548 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3306 2.2417 0.0183 5 6 3.3876 1.6729 -0.0235 6 7 3.8312 2.8999 0.1418 7 14 4.5938 0.2716 -0.2898 8 1 4.7789 0.0481 -1.7461 9 1 5.8991 0.6180 0.3277 10 1 4.0621 -0.9650 0.3373 11 7 2.0197 -0.6925 -1.1994 12 6 1.5487 -0.0264 -2.4211 13 6 1.0266 -0.9136 -3.5530 14 6 2.3799 -0.2117 -3.6922 15 6 2.0324 -0.7104 1.2304 16 6 2.2070 -0.0176 2.4191 17 6 2.6718 -0.7119 3.5252 18 6 2.9443 -2.0619 3.4074 19 7 2.7674 -2.6882 2.2607 20 6 2.3268 -2.0598 1.1881 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.7847 3.0772 0.1256 25 1 3.0262 -0.7625 -1.1909 26 1 1.0634 0.9384 -2.2732 27 1 1.0332 -1.9915 -3.3914 28 1 0.1983 -0.5323 -4.1501 29 1 2.4412 0.6310 -4.3807 30 1 3.2764 -0.8276 -3.6218 31 1 1.9819 1.0368 2.4826 32 1 2.8191 -0.2044 4.4671 33 1 3.3071 -2.6100 4.2644 34 1 2.1939 -2.6063 0.2662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:11 Heat of formation + Delta-G solvation = 78.568670 kcal Electronic energy + Delta-G solvation = -16836.537937 eV Core-core repulsion = 14349.802681 eV Total energy + Delta-G solvation = -2486.735256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73181 -37.54550 -34.96908 -32.08653 -31.47533 -29.81425 -28.19466 -25.50807 -23.21669 -22.46197 -21.83200 -20.46704 -19.39117 -16.81438 -16.47850 -15.68561 -15.49932 -15.08441 -14.52774 -13.77882 -13.40014 -13.01576 -12.75870 -12.41672 -12.28188 -12.14740 -11.69144 -11.22667 -11.00413 -10.88880 -10.68436 -10.57080 -10.32354 -9.88679 -9.70821 -9.47979 -8.99849 -8.77800 -8.67307 -7.97735 -7.33149 -6.33824 -4.36753 1.85191 2.07882 3.10782 3.22036 3.30302 4.19098 4.45925 4.56328 4.79289 5.01553 5.15409 5.54394 5.56759 5.59901 5.79087 5.84139 5.96127 5.98491 6.12129 6.26348 6.29362 6.34337 6.44346 6.48107 6.61401 6.65028 6.74493 6.95532 6.98705 7.21988 7.44477 7.50608 7.85642 8.12720 8.33767 8.66363 8.71301 9.29045 10.77628 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.013015 C = 0.010936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.750478 B = 2150.824200 C = 2559.799499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.237 3.763 3 C -0.542 4.542 4 H 0.080 0.920 5 C 0.091 3.909 6 N -0.881 5.881 7 Si 0.833 3.167 8 H -0.274 1.274 9 H -0.295 1.295 10 H -0.232 1.232 11 N -0.658 5.658 12 C 0.055 3.945 13 C -0.183 4.183 14 C -0.206 4.206 15 C -0.092 4.092 16 C -0.052 4.052 17 C -0.187 4.187 18 C 0.068 3.932 19 N -0.501 5.501 20 C 0.100 3.900 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.320 0.680 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -6.028 0.090 6.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.147 3.853 3 C -0.581 4.581 4 H 0.098 0.902 5 C -0.114 4.114 6 N -0.517 5.517 7 Si 0.662 3.338 8 H -0.200 1.200 9 H -0.223 1.223 10 H -0.157 1.157 11 N -0.295 5.295 12 C -0.056 4.056 13 C -0.222 4.222 14 C -0.245 4.245 15 C -0.094 4.094 16 C -0.078 4.078 17 C -0.207 4.207 18 C -0.089 4.089 19 N -0.210 5.210 20 C -0.057 4.057 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.498 -7.265 0.084 8.064 hybrid contribution 1.497 1.178 -0.150 1.911 sum -2.001 -6.087 -0.067 6.408 Atomic orbital electron populations 1.21614 0.94554 0.99781 1.00988 1.17848 0.92865 0.91167 0.83414 1.21378 0.92707 0.90963 1.53049 0.90153 1.24893 0.98081 0.94955 0.93473 1.69894 1.14756 1.19522 1.47535 0.87819 0.81609 0.85093 0.79234 1.20022 1.22279 1.15708 1.60940 1.14226 1.52591 1.01701 1.22146 1.01295 0.97257 0.84873 1.23111 0.96203 0.99249 1.03598 1.23158 0.95092 1.03309 1.02898 1.21330 0.97029 0.94102 0.96977 1.21650 0.93914 1.00918 0.91357 1.22073 1.03030 0.95925 0.99681 1.22475 0.98656 0.92284 0.95481 1.67609 1.13373 1.40312 0.99716 1.22693 0.94573 0.92287 0.96139 0.93181 0.92738 0.94073 0.92350 0.85494 0.86887 0.89145 0.89620 0.89358 0.89723 0.83906 0.85883 0.84153 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.28 37.16 0.31 -1.82 16 2 C 0.24 5.06 0.51 -133.91 -0.07 4.99 16 3 C -0.54 -13.54 6.06 -34.44 -0.21 -13.75 16 4 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 5 C 0.09 2.42 5.12 -17.82 -0.09 2.33 16 6 N -0.88 -25.18 13.96 55.43 0.77 -24.40 16 7 Si 0.83 20.21 23.57 -169.99 -4.01 16.20 16 8 H -0.27 -6.55 7.09 56.52 0.40 -6.15 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 10 H -0.23 -5.42 3.63 56.52 0.21 -5.22 16 11 N -0.66 -13.64 5.01 -95.38 -0.48 -14.12 16 12 C 0.06 1.07 4.78 -67.71 -0.32 0.74 16 13 C -0.18 -2.92 10.46 -26.69 -0.28 -3.20 16 14 C -0.21 -3.62 10.34 -26.69 -0.28 -3.90 16 15 C -0.09 -1.93 2.49 -104.48 -0.26 -2.19 16 16 C -0.05 -1.07 8.73 -39.28 -0.34 -1.41 16 17 C -0.19 -3.33 10.11 -39.44 -0.40 -3.73 16 18 C 0.07 1.20 11.18 -17.55 -0.20 1.00 16 19 N -0.50 -10.00 10.36 -13.25 -0.14 -10.13 16 20 C 0.10 2.05 8.65 -17.55 -0.15 1.90 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.05 1.00 6.70 -51.93 -0.35 0.66 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.32 7.04 3.19 -39.29 -0.13 6.91 16 26 H 0.11 2.33 6.36 -51.93 -0.33 2.00 16 27 H 0.09 1.41 8.14 -51.94 -0.42 0.98 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.14 3.05 7.23 -52.49 -0.38 2.67 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 34 H 0.15 3.04 7.32 -52.49 -0.38 2.65 16 LS Contribution 269.52 15.07 4.06 4.06 Total: -1.00 -27.84 269.52 -6.78 -34.62 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.70 Total: 12.81 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.29 Total: -19.04 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.16 Total: -48.66 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.01 Total: 16.20 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.84 -6.78 -34.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.192 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds