Wall clock time and date at job start Mon Mar 30 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47154 * 2 1 4 4 H 1.08007 * 119.99898 * 1.12087 * 3 2 1 5 5 C 1.37870 * 120.00402 * 181.12587 * 3 2 1 6 6 N 1.31514 * 120.00205 * 188.34843 * 5 3 2 7 7 Si 1.86803 * 119.99989 * 8.34301 * 5 3 2 8 8 H 1.48501 * 109.46603 * 86.14497 * 7 5 3 9 9 H 1.48497 * 109.47153 * 206.14225 * 7 5 3 10 10 H 1.48491 * 109.47076 * 326.14399 * 7 5 3 11 11 N 1.46901 * 109.47423 * 240.00031 * 2 1 3 12 12 C 1.46901 * 110.99831 * 59.99784 * 11 2 1 13 13 C 1.53007 * 117.49518 * 223.74949 * 12 11 2 14 14 C 1.53003 * 117.49909 * 155.09140 * 12 11 2 15 15 C 1.50699 * 109.47379 * 119.99889 * 2 1 3 16 16 C 1.38678 * 120.41917 * 273.02230 * 15 2 1 17 17 C 1.38623 * 118.42237 * 180.02562 * 16 15 2 18 18 C 1.38225 * 119.15974 * 0.02562 * 17 16 15 19 19 N 1.31855 * 120.76750 * 0.02619 * 18 17 16 20 20 C 1.31888 * 121.72170 * 359.96874 * 19 18 17 21 21 H 1.08998 * 109.47434 * 299.99714 * 1 2 3 22 22 H 1.08997 * 109.47187 * 60.00315 * 1 2 3 23 23 H 1.09001 * 109.46931 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00092 * 179.97438 * 6 5 3 25 25 H 1.00898 * 111.00109 * 183.94863 * 11 2 1 26 26 H 1.08999 * 115.54898 * 9.41679 * 12 11 2 27 27 H 1.08988 * 117.49862 * 359.97438 * 13 12 11 28 28 H 1.08999 * 117.49337 * 145.02292 * 13 12 11 29 29 H 1.09000 * 117.49617 * 214.98016 * 14 12 11 30 30 H 1.08998 * 117.49578 * 359.97438 * 14 12 11 31 31 H 1.08002 * 120.78656 * 0.30418 * 16 15 2 32 32 H 1.08001 * 120.42031 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.62035 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.61548 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3306 2.2417 0.0183 5 6 3.3876 1.6729 -0.0235 6 7 3.8312 2.8999 0.1418 7 14 4.5938 0.2716 -0.2898 8 1 4.7789 0.0481 -1.7461 9 1 5.8991 0.6180 0.3277 10 1 4.0621 -0.9650 0.3373 11 7 2.0197 -0.6925 -1.1994 12 6 1.5487 -0.0264 -2.4211 13 6 1.0266 -0.9136 -3.5530 14 6 2.3799 -0.2117 -3.6922 15 6 2.0324 -0.7104 1.2304 16 6 2.2070 -0.0176 2.4191 17 6 2.6718 -0.7119 3.5252 18 6 2.9443 -2.0619 3.4074 19 7 2.7674 -2.6882 2.2607 20 6 2.3268 -2.0598 1.1881 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.7847 3.0772 0.1256 25 1 3.0262 -0.7625 -1.1909 26 1 1.0634 0.9384 -2.2732 27 1 1.0332 -1.9915 -3.3914 28 1 0.1983 -0.5323 -4.1501 29 1 2.4412 0.6310 -4.3807 30 1 3.2764 -0.8276 -3.6218 31 1 1.9819 1.0368 2.4826 32 1 2.8191 -0.2044 4.4671 33 1 3.3071 -2.6100 4.2644 34 1 2.1939 -2.6063 0.2662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:11 Heat of formation + Delta-G solvation = 60.471599 kcal Electronic energy + Delta-G solvation = -16837.322685 eV Core-core repulsion = 14349.802681 eV Total energy + Delta-G solvation = -2487.520004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28001 -39.07993 -36.53091 -34.08284 -32.99138 -31.32582 -29.78568 -27.43568 -24.76188 -24.01906 -23.17049 -21.97052 -21.12249 -18.67341 -17.99477 -17.40800 -17.08613 -16.57790 -16.21185 -15.18410 -15.05507 -14.89119 -14.34942 -14.05650 -13.90580 -13.72586 -13.25173 -12.87761 -12.61115 -12.47482 -12.29445 -12.26665 -11.99308 -11.66265 -11.29665 -11.03157 -10.85466 -10.48304 -10.21100 -9.53003 -8.99342 -8.42003 -6.44340 0.36262 0.51816 1.15148 1.28108 1.31565 2.18338 2.89578 3.03081 3.07911 3.36253 3.72573 4.12541 4.14312 4.21246 4.30624 4.37987 4.38856 4.48467 4.72314 4.78529 4.80547 4.87665 4.94053 5.01433 5.12189 5.21506 5.35057 5.39997 5.43333 5.55396 5.70150 5.97365 6.02660 6.41414 6.51125 6.63089 7.16685 7.23723 8.72889 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.013015 C = 0.010936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.750478 B = 2150.824200 C = 2559.799499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.237 3.763 3 C -0.522 4.522 4 H 0.045 0.955 5 C 0.051 3.949 6 N -0.929 5.929 7 Si 0.880 3.120 8 H -0.270 1.270 9 H -0.314 1.314 10 H -0.215 1.215 11 N -0.648 5.648 12 C 0.020 3.980 13 C -0.147 4.147 14 C -0.210 4.210 15 C -0.108 4.108 16 C -0.072 4.072 17 C -0.179 4.179 18 C 0.072 3.928 19 N -0.511 5.511 20 C 0.093 3.907 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.263 0.737 25 H 0.310 0.690 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -8.315 0.308 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.561 4.561 4 H 0.063 0.937 5 C -0.149 4.149 6 N -0.568 5.568 7 Si 0.709 3.291 8 H -0.196 1.196 9 H -0.243 1.243 10 H -0.139 1.139 11 N -0.284 5.284 12 C -0.091 4.091 13 C -0.185 4.185 14 C -0.248 4.248 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.199 4.199 18 C -0.084 4.084 19 N -0.221 5.221 20 C -0.063 4.063 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.870 -9.577 0.282 10.334 hybrid contribution 1.519 1.924 -0.161 2.457 sum -2.351 -7.653 0.121 8.007 Atomic orbital electron populations 1.21544 0.93006 1.00760 1.01010 1.17810 0.94196 0.88975 0.84326 1.21537 0.91751 0.92284 1.50537 0.93665 1.25377 0.99535 0.96179 0.93823 1.70017 1.14722 1.21448 1.50584 0.87085 0.78982 0.83799 0.79222 1.19609 1.24277 1.13924 1.61041 1.13338 1.52156 1.01860 1.22199 1.03696 0.97814 0.85354 1.23163 0.95800 0.99249 1.00313 1.23244 0.95926 1.03995 1.01672 1.21232 0.98418 0.94693 0.96787 1.21656 0.95243 1.00339 0.92561 1.22413 1.01240 0.96163 1.00052 1.23157 0.96994 0.92416 0.95881 1.67673 1.13550 1.40607 1.00242 1.22702 0.94959 0.91849 0.96775 0.93352 0.92601 0.92473 0.92750 0.86633 0.88945 0.88133 0.87149 0.88428 0.90093 0.85879 0.82580 0.80051 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.96 8.28 71.98 0.60 -3.36 16 2 C 0.24 10.06 0.51 2.03 0.00 10.06 16 3 C -0.52 -26.73 6.06 25.60 0.16 -26.57 16 4 H 0.05 2.59 7.99 -2.91 -0.02 2.57 16 5 C 0.05 2.79 5.12 84.65 0.43 3.22 16 6 N -0.93 -54.93 13.96 21.44 0.30 -54.63 16 7 Si 0.88 42.21 23.57 68.60 1.62 43.83 16 8 H -0.27 -12.60 7.09 99.48 0.71 -11.90 16 9 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 10 H -0.22 -9.69 3.63 99.48 0.36 -9.33 16 11 N -0.65 -26.14 5.01 -455.67 -2.29 -28.43 16 12 C 0.02 0.75 4.78 44.92 0.21 0.96 16 13 C -0.15 -4.26 10.46 30.62 0.32 -3.94 16 14 C -0.21 -7.00 10.34 30.62 0.32 -6.68 16 15 C -0.11 -4.45 2.49 -19.77 -0.05 -4.50 16 16 C -0.07 -2.87 8.73 22.47 0.20 -2.67 16 17 C -0.18 -5.87 10.11 22.36 0.23 -5.64 16 18 C 0.07 2.29 11.18 84.69 0.95 3.23 16 19 N -0.51 -18.86 10.36 -195.84 -2.03 -20.89 16 20 C 0.09 3.64 8.65 84.67 0.73 4.37 16 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 2.04 6.70 -2.39 -0.02 2.02 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.31 13.25 3.19 -89.70 -0.29 12.97 16 26 H 0.09 3.84 6.36 -2.39 -0.02 3.82 16 27 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.12 5.35 7.23 -2.91 -0.02 5.33 16 32 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 33 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.16 5.88 7.32 -2.91 -0.02 5.86 16 Total: -1.00 -60.42 269.52 2.15 -58.28 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.46 Total: 33.37 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.09 Total: -31.52 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.02 Total: -103.95 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.62 Total: 43.83 kcal Total: -60.42 2.15 -58.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.748 kcal (2) G-P(sol) polarization free energy of solvation -60.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds