Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.46998 * 2 1 4 4 H 1.08002 * 120.00083 * 239.99793 * 3 2 1 5 5 C 1.37881 * 120.00047 * 59.99793 * 3 2 1 6 6 N 1.31512 * 119.99928 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99840 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.47016 * 60.00050 * 7 5 3 9 9 H 1.48498 * 109.46781 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47053 * 299.99912 * 7 5 3 11 11 N 1.46905 * 109.47249 * 119.99636 * 2 1 3 12 12 C 1.46899 * 111.00158 * 180.02562 * 11 2 1 13 13 C 1.53001 * 117.49658 * 223.62380 * 12 11 2 14 14 C 1.52995 * 117.49913 * 155.00260 * 12 11 2 15 15 C 1.50695 * 109.47368 * 239.99747 * 2 1 3 16 16 C 1.38678 * 120.41675 * 60.25392 * 15 2 1 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 2 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47404 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47285 * 300.00011 * 1 2 3 23 23 H 1.09003 * 109.47427 * 60.00653 * 1 2 3 24 24 H 0.97001 * 119.99808 * 180.02562 * 6 5 3 25 25 H 1.00900 * 110.99574 * 303.95873 * 11 2 1 26 26 H 1.08999 * 115.54801 * 9.32553 * 12 11 2 27 27 H 1.08997 * 117.49859 * 0.02562 * 13 12 11 28 28 H 1.09000 * 117.49483 * 145.01749 * 13 12 11 29 29 H 1.08999 * 117.49842 * 214.97641 * 14 12 11 30 30 H 1.08998 * 117.49940 * 0.02562 * 14 12 11 31 31 H 1.07994 * 120.78944 * 359.96926 * 16 15 2 32 32 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 33 33 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 1 2.6532 1.7741 -0.8100 5 6 1.6991 2.2699 1.0341 6 7 0.9434 1.8396 2.0206 7 14 2.3212 4.0312 1.0337 8 1 1.8256 4.7309 -0.1788 9 1 1.8257 4.7314 2.2459 10 1 3.8062 4.0317 1.0333 11 7 2.0196 -0.6924 1.1995 12 6 3.4881 -0.7115 1.2338 13 6 4.1684 -2.0227 1.6325 14 6 4.1612 -0.8389 2.6018 15 6 2.0323 -0.7104 -1.2304 16 6 1.7070 -0.2411 -2.4941 17 6 2.1872 -0.9296 -3.5974 18 6 2.9731 -2.0499 -3.4025 19 7 3.2670 -2.4643 -2.1858 20 6 2.8277 -1.8343 -1.1136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8901 24 1 0.7087 2.4370 2.7479 25 1 1.6441 -0.2739 2.0372 26 1 3.9838 -0.0945 0.4844 27 1 3.5264 -2.8712 1.8689 28 1 5.1120 -2.2684 1.1452 29 1 5.1001 -0.3060 2.7523 30 1 3.5145 -0.9090 3.4763 31 1 1.0904 0.6371 -2.6159 32 1 1.9500 -0.5951 -4.5965 33 1 3.3515 -2.5916 -4.2568 34 1 3.0889 -2.2039 -0.1330 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = 68.898170 kcal Electronic energy + Delta-G solvation = -16735.143037 eV Core-core repulsion = 14247.988437 eV Total energy + Delta-G solvation = -2487.154601 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63455 -37.19258 -34.89763 -31.99293 -31.29259 -29.45166 -27.62900 -25.38266 -23.03041 -22.73486 -21.51900 -20.23924 -19.38171 -16.60840 -16.36273 -15.36126 -15.22034 -14.77263 -14.07000 -13.81588 -13.33273 -12.89792 -12.62467 -12.31508 -11.90012 -11.60176 -11.44944 -11.02918 -11.00306 -10.84822 -10.63003 -10.43324 -10.25336 -9.88846 -9.45589 -9.26271 -8.97579 -8.69015 -8.58276 -7.99866 -7.11650 -6.15683 -4.34542 1.93141 2.09558 3.18349 3.24141 3.27336 4.24178 4.63355 4.67404 4.99047 5.18154 5.31461 5.53145 5.73344 5.77094 5.79413 5.90506 6.00103 6.27662 6.37736 6.39974 6.48878 6.53035 6.81084 6.83816 6.85266 6.89503 6.95430 7.06757 7.39948 7.54758 7.60762 7.80978 8.04382 8.46068 8.69093 8.74150 8.93427 9.37409 10.78528 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.011542 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.221195 B = 2425.367424 C = 3075.791742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.268 3.732 3 C -0.535 4.535 4 H 0.055 0.945 5 C 0.075 3.925 6 N -0.888 5.888 7 Si 0.895 3.105 8 H -0.277 1.277 9 H -0.286 1.286 10 H -0.277 1.277 11 N -0.657 5.657 12 C 0.060 3.940 13 C -0.201 4.201 14 C -0.199 4.199 15 C -0.079 4.079 16 C -0.076 4.076 17 C -0.185 4.185 18 C 0.061 3.939 19 N -0.496 5.496 20 C 0.082 3.918 21 H 0.020 0.980 22 H 0.088 0.912 23 H 0.034 0.966 24 H 0.267 0.733 25 H 0.366 0.634 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -3.318 -3.564 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.177 3.823 3 C -0.574 4.574 4 H 0.073 0.927 5 C -0.128 4.128 6 N -0.526 5.526 7 Si 0.723 3.277 8 H -0.202 1.202 9 H -0.211 1.211 10 H -0.203 1.203 11 N -0.291 5.291 12 C -0.051 4.051 13 C -0.239 4.239 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.102 4.102 17 C -0.205 4.205 18 C -0.096 4.096 19 N -0.205 5.205 20 C -0.074 4.074 21 H 0.039 0.961 22 H 0.107 0.893 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.192 0.808 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.188 -4.615 -3.551 6.220 hybrid contribution 0.050 2.805 0.067 2.806 sum 2.238 -1.810 -3.484 4.519 Atomic orbital electron populations 1.21720 0.95680 0.98185 1.02653 1.17443 0.92062 0.89446 0.83320 1.21575 1.32214 0.95832 1.07762 0.92667 1.24904 0.94132 0.98539 0.95216 1.69619 1.36101 1.36357 1.10566 0.86598 0.79284 0.84342 0.77512 1.20207 1.21132 1.20256 1.60729 1.02954 1.57199 1.08263 1.22158 0.90814 0.96041 0.96119 1.23233 1.02115 0.93565 1.05010 1.23127 1.02508 1.02838 0.95307 1.21411 0.95325 0.94901 0.96521 1.21436 0.98036 0.98739 0.91994 1.21968 1.01221 0.98097 0.99210 1.22476 0.97099 0.95108 0.94928 1.67711 1.22014 1.31686 0.99064 1.23642 0.93561 0.92231 0.97976 0.96131 0.89302 0.94658 0.92275 0.80844 0.88528 0.89046 0.89846 0.90129 0.89366 0.85320 0.86183 0.84333 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 8.33 37.15 0.31 -2.50 16 2 C 0.27 6.11 0.50 -133.91 -0.07 6.04 16 3 C -0.53 -13.24 6.47 -34.44 -0.22 -13.46 16 4 H 0.06 1.42 7.60 -52.49 -0.40 1.02 16 5 C 0.07 1.86 5.22 -17.82 -0.09 1.77 16 6 N -0.89 -22.22 9.57 55.43 0.53 -21.69 16 7 Si 0.89 20.03 29.54 -169.99 -5.02 15.00 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 N -0.66 -14.53 5.76 -95.38 -0.55 -15.08 16 12 C 0.06 1.25 3.50 -67.72 -0.24 1.01 16 13 C -0.20 -3.52 8.43 -26.73 -0.23 -3.74 16 14 C -0.20 -3.64 10.33 -26.74 -0.28 -3.91 16 15 C -0.08 -1.70 4.36 -104.48 -0.46 -2.15 16 16 C -0.08 -1.48 8.87 -39.28 -0.35 -1.83 16 17 C -0.18 -3.13 10.11 -39.44 -0.40 -3.53 16 18 C 0.06 1.05 11.18 -17.54 -0.20 0.86 16 19 N -0.50 -9.85 10.36 -13.25 -0.14 -9.99 16 20 C 0.08 1.71 9.43 -17.55 -0.17 1.54 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 23 H 0.03 0.76 7.47 -51.93 -0.39 0.37 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.37 8.69 6.68 -39.29 -0.26 8.43 16 26 H 0.10 2.20 6.77 -51.93 -0.35 1.85 16 27 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.13 2.44 7.67 -52.49 -0.40 2.04 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.18 3.67 3.46 -52.49 -0.18 3.49 16 LS Contribution 274.15 15.07 4.13 4.13 Total: -1.00 -25.26 274.15 -7.82 -33.08 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -4.39 Total: 14.46 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.38 Total: -19.91 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.16 Total: -46.76 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.26 -7.82 -33.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.979 kcal (2) G-P(sol) polarization free energy of solvation -25.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds