Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.46998 * 2 1 4 4 H 1.08002 * 120.00083 * 239.99793 * 3 2 1 5 5 C 1.37881 * 120.00047 * 59.99793 * 3 2 1 6 6 N 1.31512 * 119.99928 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99840 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.47016 * 60.00050 * 7 5 3 9 9 H 1.48498 * 109.46781 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47053 * 299.99912 * 7 5 3 11 11 N 1.46905 * 109.47249 * 119.99636 * 2 1 3 12 12 C 1.46899 * 111.00158 * 180.02562 * 11 2 1 13 13 C 1.53001 * 117.49658 * 223.62380 * 12 11 2 14 14 C 1.52995 * 117.49913 * 155.00260 * 12 11 2 15 15 C 1.50695 * 109.47368 * 239.99747 * 2 1 3 16 16 C 1.38678 * 120.41675 * 60.25392 * 15 2 1 17 17 C 1.38627 * 118.41930 * 180.24221 * 16 15 2 18 18 C 1.38232 * 119.16085 * 359.75178 * 17 16 15 19 19 N 1.31857 * 120.76541 * 359.97438 * 18 17 16 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47404 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47285 * 300.00011 * 1 2 3 23 23 H 1.09003 * 109.47427 * 60.00653 * 1 2 3 24 24 H 0.97001 * 119.99808 * 180.02562 * 6 5 3 25 25 H 1.00900 * 110.99574 * 303.95873 * 11 2 1 26 26 H 1.08999 * 115.54801 * 9.32553 * 12 11 2 27 27 H 1.08997 * 117.49859 * 0.02562 * 13 12 11 28 28 H 1.09000 * 117.49483 * 145.01749 * 13 12 11 29 29 H 1.08999 * 117.49842 * 214.97641 * 14 12 11 30 30 H 1.08998 * 117.49940 * 0.02562 * 14 12 11 31 31 H 1.07994 * 120.78944 * 359.96926 * 16 15 2 32 32 H 1.07997 * 120.42083 * 179.72800 * 17 16 15 33 33 H 1.07999 * 119.61954 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.61237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 1 2.6532 1.7741 -0.8100 5 6 1.6991 2.2699 1.0341 6 7 0.9434 1.8396 2.0206 7 14 2.3212 4.0312 1.0337 8 1 1.8256 4.7309 -0.1788 9 1 1.8257 4.7314 2.2459 10 1 3.8062 4.0317 1.0333 11 7 2.0196 -0.6924 1.1995 12 6 3.4881 -0.7115 1.2338 13 6 4.1684 -2.0227 1.6325 14 6 4.1612 -0.8389 2.6018 15 6 2.0323 -0.7104 -1.2304 16 6 1.7070 -0.2411 -2.4941 17 6 2.1872 -0.9296 -3.5974 18 6 2.9731 -2.0499 -3.4025 19 7 3.2670 -2.4643 -2.1858 20 6 2.8277 -1.8343 -1.1136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8901 24 1 0.7087 2.4370 2.7479 25 1 1.6441 -0.2739 2.0372 26 1 3.9838 -0.0945 0.4844 27 1 3.5264 -2.8712 1.8689 28 1 5.1120 -2.2684 1.1452 29 1 5.1001 -0.3060 2.7523 30 1 3.5145 -0.9090 3.4763 31 1 1.0904 0.6371 -2.6159 32 1 1.9500 -0.5951 -4.5965 33 1 3.3515 -2.5916 -4.2568 34 1 3.0889 -2.2039 -0.1330 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = 54.506528 kcal Electronic energy + Delta-G solvation = -16735.767106 eV Core-core repulsion = 14247.988437 eV Total energy + Delta-G solvation = -2487.778669 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15007 -38.76679 -36.54655 -33.77210 -32.79477 -30.99981 -29.34663 -27.28559 -24.55791 -24.24542 -22.97833 -21.84933 -21.06385 -18.38653 -17.86092 -16.93551 -16.87062 -16.45841 -15.57210 -15.35781 -15.02704 -14.43813 -14.18745 -13.84575 -13.52701 -13.36851 -13.14621 -12.84891 -12.71768 -12.37193 -12.26091 -12.22887 -11.99298 -11.58225 -11.01682 -10.88205 -10.59950 -10.43469 -10.09714 -9.52288 -8.85874 -8.01749 -6.27819 0.48205 0.59733 1.37845 1.41449 1.46387 2.38967 3.07461 3.14073 3.19813 3.69832 3.81160 4.19964 4.20881 4.24212 4.41611 4.42251 4.50076 4.77077 4.85094 4.87585 4.98731 5.01185 5.14364 5.18571 5.23874 5.38267 5.39894 5.44013 5.63639 5.80320 5.93304 6.08500 6.20846 6.66254 6.87596 7.07236 7.28428 7.46149 8.87220 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.011542 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.221195 B = 2425.367424 C = 3075.791742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.265 3.735 3 C -0.540 4.540 4 H 0.039 0.961 5 C 0.042 3.958 6 N -0.899 5.899 7 Si 0.941 3.059 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.282 1.282 11 N -0.654 5.654 12 C 0.036 3.964 13 C -0.173 4.173 14 C -0.193 4.193 15 C -0.103 4.103 16 C -0.090 4.090 17 C -0.173 4.173 18 C 0.062 3.938 19 N -0.510 5.510 20 C 0.069 3.931 21 H 0.024 0.976 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.266 0.734 25 H 0.353 0.647 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.180 0.820 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -3.906 -4.772 6.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.175 3.825 3 C -0.580 4.580 4 H 0.057 0.943 5 C -0.160 4.160 6 N -0.538 5.538 7 Si 0.768 3.232 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.208 1.208 11 N -0.287 5.287 12 C -0.075 4.075 13 C -0.212 4.212 14 C -0.231 4.231 15 C -0.106 4.106 16 C -0.116 4.116 17 C -0.192 4.192 18 C -0.095 4.095 19 N -0.219 5.219 20 C -0.086 4.086 21 H 0.043 0.957 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.176 0.824 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.197 0.803 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.917 -5.211 -4.760 7.637 hybrid contribution -0.150 2.961 0.347 2.985 sum 2.767 -2.250 -4.412 5.674 Atomic orbital electron populations 1.21605 0.96066 0.98040 1.01667 1.17390 0.91851 0.88831 0.84473 1.21674 1.31916 0.97171 1.07230 0.94291 1.25385 0.94490 1.00907 0.95186 1.69710 1.36519 1.36865 1.10685 0.85879 0.78369 0.81540 0.77373 1.20191 1.20855 1.20777 1.60780 1.03939 1.56588 1.07379 1.22037 0.89939 0.98408 0.97131 1.23212 1.02082 0.92537 1.03342 1.23186 1.02558 1.03109 0.94246 1.21334 0.96841 0.95777 0.96617 1.21602 0.98484 0.99157 0.92358 1.22348 0.99591 0.97106 1.00169 1.23185 0.96048 0.95094 0.95128 1.67741 1.22429 1.31966 0.99782 1.23570 0.94104 0.92446 0.98475 0.95739 0.91251 0.94502 0.92420 0.82383 0.91126 0.88476 0.88267 0.88904 0.89379 0.85499 0.82195 0.80319 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.33 71.98 0.60 -4.71 16 2 C 0.27 12.27 0.50 2.03 0.00 12.28 16 3 C -0.54 -27.23 6.47 25.60 0.17 -27.06 16 4 H 0.04 2.04 7.60 -2.91 -0.02 2.02 16 5 C 0.04 2.09 5.22 84.66 0.44 2.53 16 6 N -0.90 -45.58 9.57 21.45 0.21 -45.37 16 7 Si 0.94 41.31 29.54 68.60 2.03 43.33 16 8 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 N -0.65 -29.34 5.76 -455.69 -2.62 -31.97 16 12 C 0.04 1.50 3.50 44.91 0.16 1.66 16 13 C -0.17 -5.86 8.43 30.59 0.26 -5.60 16 14 C -0.19 -6.86 10.33 30.59 0.32 -6.54 16 15 C -0.10 -4.42 4.36 -19.77 -0.09 -4.50 16 16 C -0.09 -3.41 8.87 22.47 0.20 -3.21 16 17 C -0.17 -5.31 10.11 22.36 0.23 -5.09 16 18 C 0.06 1.96 11.18 84.69 0.95 2.90 16 19 N -0.51 -19.30 10.36 -195.83 -2.03 -21.32 16 20 C 0.07 2.84 9.43 84.67 0.80 3.64 16 21 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 22 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 23 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 24 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 25 H 0.35 17.10 6.68 -89.69 -0.60 16.50 16 26 H 0.07 3.29 6.77 -2.39 -0.02 3.27 16 27 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 28 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.13 4.76 7.67 -2.91 -0.02 4.74 16 32 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.18 7.13 3.46 -2.91 -0.01 7.12 16 Total: -1.00 -53.81 274.15 2.11 -51.70 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.50 Total: 37.33 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.02 Total: -33.69 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.45 Total: -98.67 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -53.81 2.11 -51.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.209 kcal (2) G-P(sol) polarization free energy of solvation -53.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds