Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46398 * 111.00061 * 2 1 4 4 C 1.51881 * 109.15846 * 38.80229 * 3 2 1 5 5 C 1.37793 * 120.33632 * 246.86665 * 4 3 2 6 6 C 1.38438 * 119.67938 * 182.26487 * 5 4 3 7 7 C 1.38312 * 120.12566 * 359.92385 * 6 5 4 8 8 C 1.38140 * 120.27716 * 359.36931 * 7 6 5 9 9 C 1.38656 * 119.16860 * 67.77624 * 4 3 2 10 10 N 1.39605 * 119.82164 * 356.88609 * 9 4 3 11 11 C 1.47373 * 117.67202 * 293.42659 * 10 9 4 12 12 H 1.08995 * 109.37314 * 322.23510 * 11 10 9 13 13 C 1.50700 * 109.37078 * 202.47633 * 11 10 9 14 14 H 1.07997 * 120.00366 * 240.00359 * 13 11 10 15 15 C 1.37883 * 119.99935 * 60.00128 * 13 11 10 16 16 N 1.31517 * 119.99920 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00019 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47332 * 60.00040 * 17 15 13 19 19 H 1.48497 * 109.47371 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46935 * 300.00085 * 17 15 13 21 21 C 1.46095 * 111.00165 * 126.54991 * 2 1 3 22 22 H 1.08994 * 109.47427 * 293.44633 * 1 2 3 23 23 H 1.09000 * 109.47358 * 53.45741 * 1 2 3 24 24 H 1.09007 * 109.46799 * 173.45466 * 1 2 3 25 25 H 1.09004 * 109.52711 * 158.70888 * 3 2 1 26 26 H 1.09003 * 109.52423 * 278.90363 * 3 2 1 27 27 H 1.07996 * 120.16180 * 2.24511 * 5 4 3 28 28 H 1.08001 * 119.93911 * 179.97438 * 6 5 4 29 29 H 1.07995 * 119.86073 * 179.36775 * 7 6 5 30 30 H 1.07997 * 120.15437 * 180.11532 * 8 7 6 31 31 H 0.96998 * 121.16354 * 113.40899 * 10 9 4 32 32 H 0.97001 * 120.00060 * 179.97438 * 16 15 13 33 33 H 1.09000 * 108.62503 * 184.71500 * 21 2 1 34 34 H 1.09001 * 108.62643 * 66.93133 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3667 0.0000 4 6 1.1284 2.2328 0.8990 5 6 0.3619 3.2444 0.3626 6 6 -0.3852 4.0557 1.1994 7 6 -0.3631 3.8501 2.5670 8 6 0.3933 2.8272 3.1053 9 6 1.1348 2.0045 2.2667 10 7 1.8803 0.9469 2.7906 11 6 1.4557 -0.4233 2.4525 12 1 0.3669 -0.4705 2.4357 13 6 1.9816 -1.3801 3.4913 14 1 2.6450 -2.1813 3.2009 15 6 1.6156 -1.2328 4.8124 16 7 0.8081 -0.2569 5.1662 17 14 2.2680 -2.4184 6.1001 18 1 3.7512 -2.3509 6.1290 19 1 1.7291 -2.0472 7.4331 20 1 1.8419 -3.8002 5.7617 21 6 1.9926 -0.8122 1.0957 22 1 -0.3634 0.4089 0.9427 23 1 -0.3634 0.6119 -0.8256 24 1 -0.3633 -1.0210 -0.1172 25 1 3.0178 1.3638 0.3730 26 1 1.9757 1.7638 -1.0150 27 1 0.3443 3.4039 -0.7054 28 1 -0.9871 4.8501 0.7835 29 1 -0.9395 4.4919 3.2166 30 1 0.4077 2.6673 4.1733 31 1 2.6510 1.1082 3.3570 32 1 0.5504 -0.1534 6.0956 33 1 3.0784 -0.7179 1.1109 34 1 1.7395 -1.8556 0.9074 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = 42.580756 kcal Electronic energy + Delta-G solvation = -16822.206760 eV Core-core repulsion = 14333.910951 eV Total energy + Delta-G solvation = -2488.295809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52637 -36.62399 -34.19323 -32.19836 -30.95174 -29.59633 -27.01666 -26.08860 -25.27177 -22.81746 -21.55686 -19.80706 -19.44628 -16.94837 -16.16298 -15.16100 -14.91339 -14.71690 -14.45672 -13.86978 -13.61665 -13.39140 -12.85806 -12.43429 -12.24216 -11.73828 -11.37099 -11.24513 -10.99581 -10.91634 -10.82234 -10.55729 -10.52938 -10.29813 -9.95576 -9.20947 -8.65125 -8.17769 -8.16785 -7.44800 -6.50865 -6.07513 -4.24869 2.05271 2.15688 3.24029 3.29623 3.32120 4.31764 4.42674 4.89143 4.94366 5.41073 5.45211 5.48005 5.70408 5.76857 5.94455 6.08719 6.16594 6.28249 6.32329 6.44716 6.54378 6.55800 6.69396 6.80203 6.93584 7.10564 7.18227 7.36304 7.50023 7.63556 7.68985 7.79691 7.89650 8.18167 8.73194 9.06522 9.43340 9.49231 10.92776 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.009780 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.495843 B = 2862.197033 C = 3538.098656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.112 3.888 4 C -0.158 4.158 5 C -0.104 4.104 6 C -0.161 4.161 7 C -0.116 4.116 8 C -0.139 4.139 9 C 0.213 3.787 10 N -0.758 5.758 11 C 0.264 3.736 12 H 0.027 0.973 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.077 3.923 16 N -0.861 5.861 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.042 3.958 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.387 0.613 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 5.336 -6.468 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.263 5.263 3 C -0.016 4.016 4 C -0.163 4.163 5 C -0.123 4.123 6 C -0.180 4.180 7 C -0.135 4.135 8 C -0.160 4.160 9 C 0.114 3.886 10 N -0.399 5.399 11 C 0.161 3.839 12 H 0.045 0.955 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.496 5.496 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.087 4.087 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.223 0.777 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.544 5.044 -6.828 8.507 hybrid contribution 0.116 -0.072 1.912 1.917 sum -0.428 4.972 -4.916 7.005 Atomic orbital electron populations 1.22271 0.88444 1.00882 1.00477 1.61881 1.07702 1.11747 1.44974 1.21104 0.97309 0.86762 0.96471 1.21105 1.01357 0.98328 0.95536 1.20695 0.97500 0.95576 0.98519 1.20851 1.02391 1.01069 0.93715 1.20950 0.99630 0.97997 0.94896 1.21690 0.96586 0.96881 1.00861 1.17678 0.91679 0.89176 0.90108 1.45190 1.33443 1.02104 1.59202 1.18563 0.95008 0.80134 0.90228 0.95510 1.21155 1.30837 1.13062 0.92362 0.92150 1.25048 0.94281 0.94986 0.98640 1.70053 1.32419 1.29826 1.17294 0.86695 0.79299 0.81574 0.80592 1.20197 1.21370 1.20142 1.22286 0.99305 0.96180 0.90926 0.94271 0.92865 0.92445 0.90903 0.91672 0.87265 0.87481 0.87470 0.85906 0.77727 0.93020 0.92315 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 8.25 60.06 0.50 1.00 16 2 N -0.54 -10.29 5.05 -246.01 -1.24 -11.53 16 3 C 0.11 1.98 5.75 -4.67 -0.03 1.96 16 4 C -0.16 -2.96 3.49 -104.05 -0.36 -3.32 16 5 C -0.10 -1.72 9.70 -39.67 -0.38 -2.10 16 6 C -0.16 -2.60 10.05 -39.48 -0.40 -3.00 16 7 C -0.12 -2.02 10.03 -39.59 -0.40 -2.42 16 8 C -0.14 -2.85 10.00 -39.36 -0.39 -3.24 16 9 C 0.21 4.49 5.26 -83.91 -0.44 4.04 16 10 N -0.76 -17.26 4.32 -53.78 -0.23 -17.49 16 11 C 0.26 6.32 2.00 -69.60 -0.14 6.18 16 12 H 0.03 0.74 6.41 -51.93 -0.33 0.41 16 13 C -0.54 -13.89 8.61 -34.44 -0.30 -14.18 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.08 2.01 5.39 -17.82 -0.10 1.92 16 16 N -0.86 -23.44 12.77 55.43 0.71 -22.73 16 17 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.04 0.89 4.70 -5.26 -0.02 0.87 16 22 H 0.04 0.83 4.91 -51.93 -0.26 0.57 16 23 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 26 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 27 H 0.11 1.55 7.99 -52.49 -0.42 1.13 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.12 2.69 8.06 -52.49 -0.42 2.27 16 31 H 0.39 9.09 8.76 -40.82 -0.36 8.73 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.06 1.23 7.84 -51.93 -0.41 0.83 16 34 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -26.47 272.38 -8.81 -35.27 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.66 Total: 9.30 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.46 Total: -12.29 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.77 Total: -51.76 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.47 -8.81 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.855 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds