Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46398 * 111.00061 * 2 1 4 4 C 1.51881 * 109.15846 * 38.80229 * 3 2 1 5 5 C 1.37793 * 120.33632 * 246.86665 * 4 3 2 6 6 C 1.38438 * 119.67938 * 182.26487 * 5 4 3 7 7 C 1.38312 * 120.12566 * 359.92385 * 6 5 4 8 8 C 1.38140 * 120.27716 * 359.36931 * 7 6 5 9 9 C 1.38656 * 119.16860 * 67.77624 * 4 3 2 10 10 N 1.39605 * 119.82164 * 356.88609 * 9 4 3 11 11 C 1.47373 * 117.67202 * 293.42659 * 10 9 4 12 12 H 1.08995 * 109.37314 * 322.23510 * 11 10 9 13 13 C 1.50700 * 109.37078 * 202.47633 * 11 10 9 14 14 H 1.07997 * 120.00366 * 240.00359 * 13 11 10 15 15 C 1.37883 * 119.99935 * 60.00128 * 13 11 10 16 16 N 1.31517 * 119.99920 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00019 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47332 * 60.00040 * 17 15 13 19 19 H 1.48497 * 109.47371 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46935 * 300.00085 * 17 15 13 21 21 C 1.46095 * 111.00165 * 126.54991 * 2 1 3 22 22 H 1.08994 * 109.47427 * 293.44633 * 1 2 3 23 23 H 1.09000 * 109.47358 * 53.45741 * 1 2 3 24 24 H 1.09007 * 109.46799 * 173.45466 * 1 2 3 25 25 H 1.09004 * 109.52711 * 158.70888 * 3 2 1 26 26 H 1.09003 * 109.52423 * 278.90363 * 3 2 1 27 27 H 1.07996 * 120.16180 * 2.24511 * 5 4 3 28 28 H 1.08001 * 119.93911 * 179.97438 * 6 5 4 29 29 H 1.07995 * 119.86073 * 179.36775 * 7 6 5 30 30 H 1.07997 * 120.15437 * 180.11532 * 8 7 6 31 31 H 0.96998 * 121.16354 * 113.40899 * 10 9 4 32 32 H 0.97001 * 120.00060 * 179.97438 * 16 15 13 33 33 H 1.09000 * 108.62503 * 184.71500 * 21 2 1 34 34 H 1.09001 * 108.62643 * 66.93133 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3667 0.0000 4 6 1.1284 2.2328 0.8990 5 6 0.3619 3.2444 0.3626 6 6 -0.3852 4.0557 1.1994 7 6 -0.3631 3.8501 2.5670 8 6 0.3933 2.8272 3.1053 9 6 1.1348 2.0045 2.2667 10 7 1.8803 0.9469 2.7906 11 6 1.4557 -0.4233 2.4525 12 1 0.3669 -0.4705 2.4357 13 6 1.9816 -1.3801 3.4913 14 1 2.6450 -2.1813 3.2009 15 6 1.6156 -1.2328 4.8124 16 7 0.8081 -0.2569 5.1662 17 14 2.2680 -2.4184 6.1001 18 1 3.7512 -2.3509 6.1290 19 1 1.7291 -2.0472 7.4331 20 1 1.8419 -3.8002 5.7617 21 6 1.9926 -0.8122 1.0957 22 1 -0.3634 0.4089 0.9427 23 1 -0.3634 0.6119 -0.8256 24 1 -0.3633 -1.0210 -0.1172 25 1 3.0178 1.3638 0.3730 26 1 1.9757 1.7638 -1.0150 27 1 0.3443 3.4039 -0.7054 28 1 -0.9871 4.8501 0.7835 29 1 -0.9395 4.4919 3.2166 30 1 0.4077 2.6673 4.1733 31 1 2.6510 1.1082 3.3570 32 1 0.5504 -0.1534 6.0956 33 1 3.0784 -0.7179 1.1109 34 1 1.7395 -1.8556 0.9074 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = 25.680333 kcal Electronic energy + Delta-G solvation = -16822.939617 eV Core-core repulsion = 14333.910951 eV Total energy + Delta-G solvation = -2489.028667 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04191 -38.14508 -35.94028 -34.01947 -32.49594 -31.19935 -28.55345 -27.70929 -27.01418 -24.52112 -23.03075 -21.38776 -21.02532 -18.84788 -17.74460 -16.85880 -16.45501 -16.37460 -16.07810 -15.44101 -15.16267 -15.03870 -14.42621 -14.08439 -13.86748 -13.32400 -12.95642 -12.82238 -12.72649 -12.61452 -12.42118 -12.15474 -12.00257 -11.95024 -11.70068 -11.15854 -10.67782 -9.69729 -9.61221 -8.99879 -8.30643 -8.00823 -6.33354 0.62595 0.71904 1.40736 1.41218 1.48562 2.38764 2.91861 3.09191 3.39099 3.59673 4.05332 4.14174 4.33926 4.40044 4.45442 4.65896 4.67442 4.78110 4.84211 4.94385 4.95320 5.05929 5.11109 5.26214 5.34953 5.50438 5.68656 5.69144 5.77303 5.93717 6.04994 6.22642 6.29414 6.38684 6.74925 7.26053 7.39848 7.68719 8.89715 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.009780 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.495843 B = 2862.197033 C = 3538.098656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.536 5.536 3 C 0.112 3.888 4 C -0.162 4.162 5 C -0.097 4.097 6 C -0.149 4.149 7 C -0.116 4.116 8 C -0.166 4.166 9 C 0.182 3.818 10 N -0.763 5.763 11 C 0.274 3.726 12 H -0.015 1.015 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.032 3.968 16 N -0.888 5.888 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.272 1.272 21 C 0.054 3.946 22 H 0.007 0.993 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.377 0.623 32 H 0.257 0.743 33 H 0.057 0.943 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 6.385 -8.393 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C -0.016 4.016 4 C -0.167 4.167 5 C -0.116 4.116 6 C -0.167 4.167 7 C -0.135 4.135 8 C -0.187 4.187 9 C 0.084 3.916 10 N -0.404 5.404 11 C 0.170 3.830 12 H 0.003 0.997 13 C -0.592 4.592 14 H 0.078 0.922 15 C -0.171 4.171 16 N -0.524 5.524 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.197 1.197 21 C -0.076 4.076 22 H 0.026 0.974 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.211 0.789 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.799 6.108 -8.777 10.723 hybrid contribution 0.130 -0.301 2.468 2.490 sum -0.669 5.807 -6.309 8.601 Atomic orbital electron populations 1.22238 0.87919 1.01441 0.99795 1.61926 1.08024 1.12468 1.43212 1.21220 0.96554 0.85884 0.97935 1.21199 1.01903 0.99233 0.94335 1.21113 0.95942 0.94099 1.00467 1.21305 1.01458 1.01219 0.92753 1.21216 0.98774 0.97129 0.96380 1.21624 0.98623 0.98915 0.99541 1.17914 0.92675 0.89482 0.91565 1.44870 1.33568 1.02259 1.59689 1.18281 0.92440 0.80753 0.91482 0.99698 1.21504 1.30774 1.13667 0.93280 0.92206 1.25747 0.94488 0.96400 1.00486 1.70196 1.33623 1.31319 1.17302 0.85694 0.78809 0.79555 0.77949 1.19580 1.21499 1.19727 1.22043 0.99017 0.96403 0.90110 0.97413 0.90098 0.92194 0.91818 0.88386 0.83608 0.83487 0.85227 0.88948 0.78894 0.93389 0.92451 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 8.25 127.69 1.05 2.28 16 2 N -0.54 -19.65 5.05 -932.25 -4.71 -24.35 16 3 C 0.11 3.73 5.75 86.03 0.49 4.23 16 4 C -0.16 -5.79 3.49 -19.49 -0.07 -5.86 16 5 C -0.10 -2.84 9.70 22.21 0.22 -2.62 16 6 C -0.15 -4.21 10.05 22.34 0.22 -3.99 16 7 C -0.12 -3.88 10.03 22.26 0.22 -3.65 16 8 C -0.17 -6.98 10.00 22.41 0.22 -6.75 16 9 C 0.18 7.79 5.26 38.17 0.20 7.99 16 10 N -0.76 -36.24 4.32 -324.06 -1.40 -37.64 16 11 C 0.27 13.66 2.00 43.43 0.09 13.75 16 12 H -0.01 -0.84 6.41 -2.39 -0.02 -0.86 16 13 C -0.55 -29.64 8.61 25.60 0.22 -29.42 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.03 1.74 5.39 84.66 0.46 2.19 16 16 N -0.89 -50.40 12.77 21.45 0.27 -50.13 16 17 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C 0.05 2.30 4.70 85.81 0.40 2.71 16 22 H 0.01 0.31 4.91 -2.39 -0.01 0.30 16 23 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 24 H 0.06 2.06 8.14 -2.38 -0.02 2.05 16 25 H 0.06 2.25 7.70 -2.38 -0.02 2.23 16 26 H 0.10 2.66 7.94 -2.39 -0.02 2.64 16 27 H 0.15 3.24 7.99 -2.91 -0.02 3.22 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.38 18.71 8.76 -92.71 -0.81 17.90 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 33 H 0.06 2.43 7.84 -2.39 -0.02 2.41 16 34 H 0.06 2.55 8.12 -2.39 -0.02 2.53 16 Total: -1.00 -59.00 272.38 0.21 -58.79 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.28 Total: 27.71 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.73 Total: -19.15 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.83 Total: -112.13 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -59.00 0.21 -58.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.468 kcal (2) G-P(sol) polarization free energy of solvation -58.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds