Wall clock time and date at job start Mon Mar 30 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46415 * 111.00198 * 2 1 4 4 C 1.51818 * 109.18337 * 321.05374 * 3 2 1 5 5 C 1.37844 * 120.27917 * 112.80250 * 4 3 2 6 6 C 1.38414 * 119.69570 * 177.56025 * 5 4 3 7 7 C 1.38314 * 120.16122 * 0.77940 * 6 5 4 8 8 C 1.38163 * 120.24117 * 0.06449 * 7 6 5 9 9 C 1.38638 * 119.31691 * 291.79174 * 4 3 2 10 10 N 1.39691 * 119.61873 * 3.72517 * 9 4 3 11 11 C 1.47334 * 117.69891 * 66.17433 * 10 9 4 12 12 H 1.08994 * 109.35905 * 37.71745 * 11 10 9 13 13 C 1.50692 * 109.35704 * 157.31287 * 11 10 9 14 14 H 1.07996 * 120.00615 * 119.99673 * 13 11 10 15 15 C 1.37881 * 119.99916 * 299.99455 * 13 11 10 16 16 N 1.31512 * 119.99736 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00143 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47474 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47338 * 120.00084 * 17 15 13 20 20 H 1.48497 * 109.47212 * 239.99879 * 17 15 13 21 21 C 1.46127 * 110.99912 * 233.49845 * 2 1 3 22 22 H 1.08996 * 109.47163 * 186.50507 * 1 2 3 23 23 H 1.09008 * 109.46620 * 306.49715 * 1 2 3 24 24 H 1.08998 * 109.47106 * 66.49594 * 1 2 3 25 25 H 1.09000 * 109.52409 * 80.96957 * 3 2 1 26 26 H 1.09005 * 109.52073 * 201.14658 * 3 2 1 27 27 H 1.07995 * 120.14499 * 357.79724 * 5 4 3 28 28 H 1.07993 * 119.92123 * 180.53857 * 6 5 4 29 29 H 1.08002 * 119.88318 * 180.35047 * 7 6 5 30 30 H 1.08003 * 120.16662 * 179.70801 * 8 7 6 31 31 H 0.97001 * 121.14602 * 246.14644 * 10 9 4 32 32 H 0.97008 * 120.00147 * 179.97438 * 16 15 13 33 33 H 1.08995 * 108.62628 * 293.27212 * 21 2 1 34 34 H 1.09001 * 108.62991 * 175.47856 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3669 0.0000 4 6 1.1314 2.2323 -0.9013 5 6 0.3589 3.2402 -0.3652 6 6 -0.3835 4.0545 -1.2028 7 6 -0.3632 3.8477 -2.5703 8 6 0.3967 2.8269 -3.1084 9 6 1.1456 2.0118 -2.2700 10 7 1.8895 0.9502 -2.7906 11 6 1.4591 -0.4179 -2.4534 12 1 0.3701 -0.4610 -2.4397 13 6 1.9813 -1.3761 -3.4926 14 1 2.6414 -2.1802 -3.2027 15 6 1.6163 -1.2264 -4.8138 16 7 0.8119 -0.2477 -5.1668 17 14 2.2629 -2.4146 -6.1019 18 1 3.1417 -3.4197 -5.4516 19 1 1.1222 -3.1047 -6.7560 20 1 3.0385 -1.6646 -7.1222 21 6 1.9926 -0.8115 -1.0966 22 1 -0.3633 -1.0210 0.1164 23 1 -0.3633 0.6113 0.8262 24 1 -0.3633 0.4098 -0.9424 25 1 1.9738 1.7648 1.0146 26 1 3.0188 1.3635 -0.3706 27 1 0.3362 3.3962 0.7032 28 1 -0.9832 4.8508 -0.7874 29 1 -0.9397 4.4893 -3.2202 30 1 0.4080 2.6636 -4.1760 31 1 2.6625 1.1084 -3.3549 32 1 0.5554 -0.1421 -6.0964 33 1 1.7364 -1.8545 -0.9110 34 1 3.0787 -0.7199 -1.1098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:15 Heat of formation + Delta-G solvation = 25.556633 kcal Electronic energy + Delta-G solvation = -16824.808442 eV Core-core repulsion = 14335.774411 eV Total energy + Delta-G solvation = -2489.034031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03991 -38.14320 -35.94190 -34.01743 -32.49735 -31.19880 -28.55321 -27.70910 -27.01606 -24.52110 -23.03085 -21.39137 -21.02543 -18.84912 -17.74544 -16.85936 -16.45049 -16.36976 -16.07616 -15.44600 -15.16885 -15.04069 -14.43027 -14.08337 -13.86567 -13.32646 -12.94447 -12.87605 -12.73144 -12.57847 -12.41340 -12.15138 -12.00234 -11.95111 -11.69716 -11.13693 -10.69460 -9.69648 -9.61040 -9.00051 -8.31083 -8.01033 -6.33493 0.62314 0.71914 1.37347 1.41142 1.51500 2.38505 2.91463 3.09368 3.39218 3.59833 4.05601 4.14080 4.33973 4.40020 4.45529 4.65844 4.67523 4.78076 4.84296 4.94434 4.95377 5.05986 5.11134 5.26263 5.34936 5.50744 5.68707 5.69175 5.77221 5.93746 6.05298 6.22539 6.29392 6.38578 6.75289 7.26456 7.39772 7.68717 8.89674 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.009794 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.576976 B = 2858.115712 C = 3534.328679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.112 3.888 4 C -0.162 4.162 5 C -0.098 4.098 6 C -0.149 4.149 7 C -0.116 4.116 8 C -0.165 4.165 9 C 0.181 3.819 10 N -0.764 5.764 11 C 0.274 3.726 12 H -0.015 1.015 13 C -0.551 4.551 14 H 0.059 0.941 15 C 0.032 3.968 16 N -0.888 5.888 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.283 1.283 21 C 0.054 3.946 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.007 0.993 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.377 0.623 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 6.373 8.418 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C -0.016 4.016 4 C -0.166 4.166 5 C -0.117 4.117 6 C -0.167 4.167 7 C -0.135 4.135 8 C -0.186 4.186 9 C 0.083 3.917 10 N -0.404 5.404 11 C 0.170 3.830 12 H 0.003 0.997 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.525 5.525 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.076 4.076 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.026 0.974 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.211 0.789 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.813 6.090 8.809 10.740 hybrid contribution 0.119 -0.284 -2.486 2.505 sum -0.693 5.806 6.324 8.612 Atomic orbital electron populations 1.22238 0.87919 1.01447 0.99791 1.61953 1.08027 1.12472 1.43166 1.21208 0.96585 0.85898 0.97905 1.21203 1.01830 0.99299 0.94281 1.21126 0.95957 0.94120 1.00469 1.21298 1.01485 1.01156 0.92757 1.21227 0.98787 0.97135 0.96376 1.21610 0.98388 0.99025 0.99578 1.17922 0.92689 0.89537 0.91552 1.44879 1.33388 1.02188 1.59976 1.18279 0.92429 0.80788 0.91501 0.99687 1.21562 1.30838 1.13349 0.93251 0.92229 1.25746 0.94494 0.96415 1.00514 1.70210 1.33815 1.31239 1.17208 0.85581 0.78097 0.79259 0.79030 1.18978 1.21061 1.20911 1.22045 0.99024 0.96404 0.90091 0.92179 0.90096 0.97426 0.88382 0.91807 0.83621 0.83493 0.85212 0.88930 0.78931 0.93407 0.92186 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 8.26 127.69 1.05 2.27 16 2 N -0.54 -19.63 5.05 -932.25 -4.71 -24.34 16 3 C 0.11 3.73 5.74 86.01 0.49 4.22 16 4 C -0.16 -5.78 3.48 -19.50 -0.07 -5.84 16 5 C -0.10 -2.86 9.69 22.22 0.22 -2.64 16 6 C -0.15 -4.20 10.05 22.33 0.22 -3.98 16 7 C -0.12 -3.89 10.03 22.27 0.22 -3.66 16 8 C -0.16 -6.94 10.00 22.40 0.22 -6.72 16 9 C 0.18 7.76 5.30 38.13 0.20 7.96 16 10 N -0.76 -36.25 4.32 -324.15 -1.40 -37.65 16 11 C 0.27 13.64 1.99 43.44 0.09 13.72 16 12 H -0.01 -0.84 6.41 -2.39 -0.02 -0.85 16 13 C -0.55 -29.52 8.61 25.60 0.22 -29.30 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.03 1.70 5.39 84.66 0.46 2.16 16 16 N -0.89 -50.38 12.77 21.45 0.27 -50.11 16 17 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.05 2.31 4.70 85.80 0.40 2.71 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.08 2.40 8.12 -2.38 -0.02 2.38 16 24 H 0.01 0.31 4.94 -2.39 -0.01 0.30 16 25 H 0.10 2.66 7.94 -2.39 -0.02 2.64 16 26 H 0.06 2.25 7.70 -2.38 -0.02 2.24 16 27 H 0.15 3.24 7.99 -2.91 -0.02 3.22 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.38 18.69 8.76 -92.71 -0.81 17.87 16 32 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 33 H 0.06 2.55 8.12 -2.39 -0.02 2.53 16 34 H 0.06 2.43 7.85 -2.39 -0.02 2.41 16 Total: -1.00 -59.10 272.42 0.21 -58.89 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.28 Total: 27.45 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.74 Total: -19.08 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -5.83 Total: -112.10 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -59.10 0.21 -58.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.446 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds