Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47044 * 2 1 4 4 H 1.07998 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.37876 * 120.00126 * 179.97438 * 3 2 1 6 6 N 1.31513 * 120.00190 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 120.00119 * 180.02562 * 5 3 2 8 8 H 1.48495 * 109.47129 * 89.99912 * 7 5 3 9 9 H 1.48501 * 109.47046 * 210.00058 * 7 5 3 10 10 H 1.48507 * 109.47060 * 329.99889 * 7 5 3 11 11 N 1.46901 * 109.47404 * 240.00030 * 2 1 3 12 12 C 1.46905 * 110.99870 * 59.99805 * 11 2 1 13 13 C 1.52996 * 117.50030 * 223.62524 * 12 11 2 14 14 C 1.52996 * 60.00024 * 252.51152 * 13 12 11 15 15 C 1.50697 * 109.47415 * 119.99897 * 2 1 3 16 16 C 1.38231 * 119.61763 * 300.00492 * 15 2 1 17 17 C 1.38628 * 119.16044 * 179.97438 * 16 15 2 18 18 C 1.38672 * 118.42083 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.16335 * 0.02562 * 18 17 16 20 20 N 1.31852 * 119.61963 * 119.72521 * 15 2 1 21 21 H 1.09001 * 109.46669 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47210 * 299.99990 * 1 2 3 23 23 H 1.09004 * 109.47282 * 60.00174 * 1 2 3 24 24 H 0.97002 * 120.00592 * 180.02562 * 6 5 3 25 25 H 1.00901 * 111.00067 * 183.94980 * 11 2 1 26 26 H 1.09002 * 115.55084 * 9.33298 * 12 11 2 27 27 H 1.09006 * 117.49920 * 359.97438 * 13 12 11 28 28 H 1.08993 * 117.50213 * 145.01986 * 13 12 11 29 29 H 1.09004 * 117.50040 * 252.50790 * 14 13 12 30 30 H 1.09005 * 117.50603 * 107.49031 * 14 13 12 31 31 H 1.08001 * 120.41892 * 359.97438 * 16 15 2 32 32 H 1.08003 * 120.78797 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.41921 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.61537 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3305 2.2417 -0.0004 5 6 3.3878 1.6728 0.0005 6 7 4.2425 0.6732 0.0005 7 14 4.0105 3.4340 0.0013 8 1 4.1750 3.9003 1.4015 9 1 5.3189 3.4967 -0.6983 10 1 3.0325 4.3051 -0.6989 11 7 2.0197 -0.6925 -1.1994 12 6 1.5487 -0.0263 -2.4211 13 6 1.0294 -0.9136 -3.5542 14 6 2.3810 -0.2100 -3.6917 15 6 2.0324 -0.7104 1.2304 16 6 1.6936 -0.2313 2.4820 17 6 2.1605 -0.8924 3.6075 18 6 2.9539 -2.0161 3.4313 19 6 3.2510 -2.4361 2.1488 20 7 2.7855 -1.7849 1.1007 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 5.1962 0.8505 0.0013 25 1 3.0263 -0.7625 -1.1909 26 1 1.0622 0.9378 -2.2731 27 1 1.0376 -1.9917 -3.3934 28 1 0.2010 -0.5334 -4.1518 29 1 2.4418 0.6331 -4.3798 30 1 3.2782 -0.8251 -3.6211 31 1 1.0729 0.6469 2.5818 32 1 1.9116 -0.5412 4.5980 33 1 3.3347 -2.5560 4.2855 34 1 3.8686 -3.3100 2.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = 64.778235 kcal Electronic energy + Delta-G solvation = -16691.788234 eV Core-core repulsion = 14204.454980 eV Total energy + Delta-G solvation = -2487.333254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20579 -36.96244 -34.48934 -31.69204 -31.33022 -29.54910 -27.59612 -25.21056 -22.97444 -22.28692 -21.50431 -20.18324 -19.03377 -16.67501 -15.91249 -15.26851 -14.83849 -14.67148 -14.31548 -13.72209 -13.29056 -12.66624 -12.43012 -12.09907 -11.94533 -11.59497 -11.23855 -11.03458 -10.85386 -10.72055 -10.70120 -10.49895 -10.20906 -9.70953 -9.40472 -9.08282 -8.82365 -8.73810 -8.13820 -7.79722 -6.87856 -6.03237 -4.28716 2.24191 2.36146 3.20840 3.29209 3.30910 4.29863 4.84890 4.95496 5.12029 5.37177 5.50538 5.61830 5.85769 5.91425 5.96983 6.03168 6.22204 6.36895 6.39252 6.49029 6.56441 6.62651 6.68906 6.80915 6.93195 6.94410 6.98923 7.04312 7.20733 7.35519 7.70482 7.86538 8.07517 8.58332 8.81280 9.15076 9.37257 9.45703 10.86251 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.013174 C = 0.009510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.034378 B = 2124.948428 C = 2943.595913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.271 3.729 3 C -0.546 4.546 4 H 0.061 0.939 5 C 0.076 3.924 6 N -0.868 5.868 7 Si 0.890 3.110 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.273 1.273 11 N -0.641 5.641 12 C 0.065 3.935 13 C -0.195 4.195 14 C -0.206 4.206 15 C 0.217 3.783 16 C -0.168 4.168 17 C -0.092 4.092 18 C -0.214 4.214 19 C 0.090 3.910 20 N -0.451 5.451 21 H 0.038 0.962 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.265 0.735 25 H 0.369 0.631 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -2.236 1.699 4.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.180 3.820 3 C -0.585 4.585 4 H 0.079 0.921 5 C -0.130 4.130 6 N -0.504 5.504 7 Si 0.717 3.283 8 H -0.207 1.207 9 H -0.212 1.212 10 H -0.198 1.198 11 N -0.276 5.276 12 C -0.047 4.047 13 C -0.234 4.234 14 C -0.244 4.244 15 C 0.079 3.921 16 C -0.189 4.189 17 C -0.118 4.118 18 C -0.234 4.234 19 C -0.067 4.067 20 N -0.159 5.159 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.195 0.805 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.432 -3.077 0.885 4.694 hybrid contribution 1.105 2.152 1.015 2.624 sum -2.328 -0.925 1.900 3.144 Atomic orbital electron populations 1.21798 0.96436 0.99566 1.00364 1.17414 0.90013 0.90077 0.84526 1.21591 0.91876 0.91697 1.53373 0.92068 1.25018 0.96992 0.97066 0.93901 1.69771 1.02405 1.30129 1.48126 0.86624 0.78371 0.85134 0.78130 1.20690 1.21175 1.19795 1.60574 1.19421 1.48792 0.98768 1.22104 1.00163 0.96051 0.86355 1.23096 0.96084 0.99317 1.04881 1.23052 0.94987 1.02851 1.03514 1.21577 0.88153 0.87902 0.94487 1.21764 1.02933 1.00849 0.93317 1.21289 0.96944 0.95279 0.98247 1.21769 1.03536 0.99697 0.98404 1.22584 0.97216 0.98385 0.88561 1.67572 1.08142 1.07456 1.32689 0.94317 0.93725 0.93043 0.92502 0.80522 0.88597 0.89494 0.90502 0.90394 0.89624 0.85932 0.86758 0.86929 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.10 37.16 0.30 -2.26 16 2 C 0.27 6.38 0.49 -133.91 -0.07 6.31 16 3 C -0.55 -13.74 6.40 -34.44 -0.22 -13.96 16 4 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 5 C 0.08 1.95 5.22 -17.82 -0.09 1.86 16 6 N -0.87 -23.22 10.57 55.43 0.59 -22.63 16 7 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 N -0.64 -15.17 5.86 -95.38 -0.56 -15.72 16 12 C 0.07 1.40 4.78 -67.71 -0.32 1.07 16 13 C -0.20 -3.57 10.46 -26.74 -0.28 -3.85 16 14 C -0.21 -3.97 10.33 -26.74 -0.28 -4.24 16 15 C 0.22 5.13 4.40 -82.59 -0.36 4.76 16 16 C -0.17 -3.60 8.83 -39.44 -0.35 -3.95 16 17 C -0.09 -1.72 10.18 -39.28 -0.40 -2.12 16 18 C -0.21 -3.89 10.11 -39.44 -0.40 -4.29 16 19 C 0.09 1.83 11.18 -17.55 -0.20 1.63 16 20 N -0.45 -10.62 9.20 -9.47 -0.09 -10.71 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.86 7.37 -51.93 -0.38 0.48 16 23 H 0.05 1.02 6.70 -51.93 -0.35 0.68 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 25 H 0.37 9.62 6.31 -39.29 -0.25 9.37 16 26 H 0.10 2.13 6.36 -51.93 -0.33 1.80 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.12 2.50 7.57 -52.49 -0.40 2.10 16 32 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 282.22 15.07 4.25 4.25 Total: -1.00 -27.20 282.22 -8.12 -35.32 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -4.63 Total: 13.02 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.66 Total: -19.04 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.06 Total: -49.06 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.20 -8.12 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.097 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds