Wall clock time and date at job start Mon Mar 30 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47044 * 2 1 4 4 H 1.07998 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.37876 * 120.00126 * 179.97438 * 3 2 1 6 6 N 1.31513 * 120.00190 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 120.00119 * 180.02562 * 5 3 2 8 8 H 1.48495 * 109.47129 * 89.99912 * 7 5 3 9 9 H 1.48501 * 109.47046 * 210.00058 * 7 5 3 10 10 H 1.48507 * 109.47060 * 329.99889 * 7 5 3 11 11 N 1.46901 * 109.47404 * 240.00030 * 2 1 3 12 12 C 1.46905 * 110.99870 * 59.99805 * 11 2 1 13 13 C 1.52996 * 117.50030 * 223.62524 * 12 11 2 14 14 C 1.52996 * 60.00024 * 252.51152 * 13 12 11 15 15 C 1.50697 * 109.47415 * 119.99897 * 2 1 3 16 16 C 1.38231 * 119.61763 * 300.00492 * 15 2 1 17 17 C 1.38628 * 119.16044 * 179.97438 * 16 15 2 18 18 C 1.38672 * 118.42083 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.16335 * 0.02562 * 18 17 16 20 20 N 1.31852 * 119.61963 * 119.72521 * 15 2 1 21 21 H 1.09001 * 109.46669 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47210 * 299.99990 * 1 2 3 23 23 H 1.09004 * 109.47282 * 60.00174 * 1 2 3 24 24 H 0.97002 * 120.00592 * 180.02562 * 6 5 3 25 25 H 1.00901 * 111.00067 * 183.94980 * 11 2 1 26 26 H 1.09002 * 115.55084 * 9.33298 * 12 11 2 27 27 H 1.09006 * 117.49920 * 359.97438 * 13 12 11 28 28 H 1.08993 * 117.50213 * 145.01986 * 13 12 11 29 29 H 1.09004 * 117.50040 * 252.50790 * 14 13 12 30 30 H 1.09005 * 117.50603 * 107.49031 * 14 13 12 31 31 H 1.08001 * 120.41892 * 359.97438 * 16 15 2 32 32 H 1.08003 * 120.78797 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.41921 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.61537 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3305 2.2417 -0.0004 5 6 3.3878 1.6728 0.0005 6 7 4.2425 0.6732 0.0005 7 14 4.0105 3.4340 0.0013 8 1 4.1750 3.9003 1.4015 9 1 5.3189 3.4967 -0.6983 10 1 3.0325 4.3051 -0.6989 11 7 2.0197 -0.6925 -1.1994 12 6 1.5487 -0.0263 -2.4211 13 6 1.0294 -0.9136 -3.5542 14 6 2.3810 -0.2100 -3.6917 15 6 2.0324 -0.7104 1.2304 16 6 1.6936 -0.2313 2.4820 17 6 2.1605 -0.8924 3.6075 18 6 2.9539 -2.0161 3.4313 19 6 3.2510 -2.4361 2.1488 20 7 2.7855 -1.7849 1.1007 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 5.1962 0.8505 0.0013 25 1 3.0263 -0.7625 -1.1909 26 1 1.0622 0.9378 -2.2731 27 1 1.0376 -1.9917 -3.3934 28 1 0.2010 -0.5334 -4.1518 29 1 2.4418 0.6331 -4.3798 30 1 3.2782 -0.8251 -3.6211 31 1 1.0729 0.6469 2.5818 32 1 1.9116 -0.5412 4.5980 33 1 3.3347 -2.5560 4.2855 34 1 3.8686 -3.3100 2.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:07 Heat of formation + Delta-G solvation = 48.857637 kcal Electronic energy + Delta-G solvation = -16692.478603 eV Core-core repulsion = 14204.454980 eV Total energy + Delta-G solvation = -2488.023623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79796 -38.60260 -36.16330 -33.56550 -32.90304 -31.13827 -29.28030 -27.11476 -24.59710 -23.84021 -23.02055 -21.80008 -20.78772 -18.48028 -17.48137 -16.88819 -16.70637 -16.19548 -15.97313 -15.30903 -15.06148 -14.27496 -14.01163 -13.75957 -13.55354 -13.30948 -12.93145 -12.73117 -12.62304 -12.46707 -12.25264 -12.20495 -11.90338 -11.49944 -11.01783 -10.74337 -10.67040 -10.37829 -9.73883 -9.39278 -8.68632 -7.92284 -6.25963 0.67744 0.84427 1.35946 1.40368 1.46706 2.39587 3.12112 3.28511 3.41863 3.75838 3.97921 4.25691 4.32506 4.38243 4.42606 4.55469 4.68296 4.74834 4.86656 4.89148 4.97755 5.02280 5.11516 5.22123 5.31006 5.37769 5.45297 5.47077 5.58851 5.70525 5.77603 6.19175 6.29104 6.72280 7.00960 7.24119 7.50060 7.75731 8.89947 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.013174 C = 0.009510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.034378 B = 2124.948428 C = 2943.595913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.261 3.739 3 C -0.545 4.545 4 H 0.054 0.946 5 C 0.039 3.961 6 N -0.886 5.886 7 Si 0.938 3.062 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.270 1.270 11 N -0.644 5.644 12 C 0.035 3.965 13 C -0.167 4.167 14 C -0.202 4.202 15 C 0.190 3.810 16 C -0.189 4.189 17 C -0.089 4.089 18 C -0.203 4.203 19 C 0.071 3.929 20 N -0.485 5.485 21 H 0.037 0.963 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.258 0.742 25 H 0.351 0.649 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -2.398 2.439 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.170 3.830 3 C -0.585 4.585 4 H 0.072 0.928 5 C -0.164 4.164 6 N -0.524 5.524 7 Si 0.765 3.235 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.195 1.195 11 N -0.277 5.277 12 C -0.076 4.076 13 C -0.206 4.206 14 C -0.241 4.241 15 C 0.052 3.948 16 C -0.210 4.210 17 C -0.115 4.115 18 C -0.223 4.223 19 C -0.086 4.086 20 N -0.193 5.193 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.174 0.826 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.842 -3.232 1.618 5.275 hybrid contribution 1.211 2.153 0.821 2.603 sum -2.631 -1.079 2.440 3.747 Atomic orbital electron populations 1.21701 0.95029 0.99625 1.00909 1.17530 0.91227 0.89292 0.84970 1.21766 0.91765 0.92612 1.52397 0.92801 1.25524 0.97305 0.99426 0.94152 1.69914 1.01929 1.31154 1.49357 0.85866 0.77587 0.82231 0.77770 1.20791 1.21638 1.19479 1.60647 1.18056 1.49276 0.99673 1.22155 1.02261 0.96571 0.86639 1.23105 0.96240 0.98780 1.02451 1.23077 0.95152 1.03413 1.02427 1.21578 0.89386 0.88787 0.95061 1.21917 1.03833 1.01501 0.93738 1.21737 0.95855 0.94822 0.99082 1.22184 1.02026 0.99190 0.98865 1.23106 0.97455 0.99014 0.89066 1.67480 1.09029 1.08226 1.34614 0.94395 0.92802 0.92785 0.93283 0.82557 0.89856 0.89688 0.87741 0.88734 0.90671 0.85842 0.83057 0.82835 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 8.10 71.98 0.58 -4.18 16 2 C 0.26 12.40 0.49 2.03 0.00 12.40 16 3 C -0.55 -27.72 6.40 25.60 0.16 -27.55 16 4 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 5 C 0.04 2.01 5.22 84.65 0.44 2.45 16 6 N -0.89 -48.12 10.57 21.45 0.23 -47.90 16 7 Si 0.94 42.37 29.54 68.60 2.03 44.40 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 N -0.64 -30.89 5.86 -455.68 -2.67 -33.56 16 12 C 0.04 1.51 4.78 44.91 0.21 1.73 16 13 C -0.17 -5.86 10.46 30.59 0.32 -5.54 16 14 C -0.20 -7.66 10.33 30.59 0.32 -7.34 16 15 C 0.19 8.97 4.40 42.55 0.19 9.16 16 16 C -0.19 -7.97 8.83 22.36 0.20 -7.77 16 17 C -0.09 -3.11 10.18 22.47 0.23 -2.88 16 18 C -0.20 -6.79 10.11 22.36 0.23 -6.56 16 19 C 0.07 2.78 11.18 84.67 0.95 3.72 16 20 N -0.48 -22.88 9.20 -183.89 -1.69 -24.57 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 2.07 7.37 -2.39 -0.02 2.05 16 23 H 0.05 2.15 6.70 -2.38 -0.02 2.13 16 24 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.35 18.78 6.31 -89.69 -0.57 18.21 16 26 H 0.08 3.73 6.36 -2.39 -0.02 3.71 16 27 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 28 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 30 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 31 H 0.12 4.98 7.57 -2.91 -0.02 4.96 16 32 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 33 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.16 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -58.36 282.22 2.24 -56.12 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.52 Total: 37.87 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 3.83 Total: -32.37 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -4.14 Total: -106.03 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -58.36 2.24 -56.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.980 kcal (2) G-P(sol) polarization free energy of solvation -58.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds