Wall clock time and date at job start Mon Mar 30 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31075 * 1 3 3 Si 1.86794 * 120.00172 * 2 1 4 4 H 1.48509 * 109.47055 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47718 * 119.99298 * 3 2 1 6 6 H 1.48498 * 109.47189 * 239.99862 * 3 2 1 7 7 C 1.39463 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99694 * 151.63042 * 7 2 1 9 9 N 1.36448 * 119.99848 * 331.63582 * 7 2 1 10 10 C 1.34410 * 124.33562 * 329.33373 * 9 7 2 11 11 O 1.21471 * 126.14500 * 0.03657 * 10 9 7 12 12 C 1.49315 * 107.70354 * 179.89254 * 10 9 7 13 13 O 1.21465 * 127.51170 * 180.15099 * 12 10 9 14 14 C 1.47492 * 104.98244 * 0.36555 * 12 10 9 15 15 C 1.39463 * 133.01642 * 179.76322 * 14 12 10 16 16 C 1.37885 * 119.79289 * 180.02562 * 15 14 12 17 17 C 1.39092 * 120.00636 * 359.97438 * 16 15 14 18 18 O 1.35641 * 119.74583 * 180.02562 * 17 16 15 19 19 C 1.39077 * 120.50483 * 0.05417 * 17 16 15 20 20 C 1.38470 * 120.13752 * 359.92902 * 19 17 16 21 21 H 0.97004 * 119.99647 * 174.67146 * 1 2 3 22 22 H 1.08001 * 120.10330 * 0.04546 * 15 14 12 23 23 H 1.08000 * 119.99918 * 180.02562 * 16 15 14 24 24 H 0.96699 * 114.00472 * 89.99446 * 18 17 16 25 25 H 1.08005 * 119.92630 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 1.2797 2.7465 -0.0006 5 1 3.0984 1.6965 1.2125 6 1 3.0985 1.6963 -1.2125 7 6 2.0081 -1.2078 0.0005 8 1 2.9908 -1.2641 -0.4439 9 7 1.4487 -2.3183 0.5624 10 6 0.5936 -2.2944 1.5992 11 8 0.1981 -1.3031 2.1791 12 6 0.2146 -3.7054 1.9077 13 8 -0.5405 -4.0956 2.7754 14 6 0.9607 -4.5225 0.9325 15 6 1.0392 -5.8962 0.7046 16 6 1.8433 -6.3780 -0.3066 17 6 2.5725 -5.4950 -1.0960 18 8 3.3614 -5.9747 -2.0896 19 6 2.4994 -4.1240 -0.8739 20 6 1.6959 -3.6255 0.1376 21 1 -0.4850 -0.8365 -0.0780 22 1 0.4718 -6.5803 1.3181 23 1 1.9063 -7.4411 -0.4862 24 1 2.9128 -6.0591 -2.9421 25 1 3.0693 -3.4468 -1.4928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369920.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:25 Heat of formation + Delta-G solvation = -81.357323 kcal Electronic energy + Delta-G solvation = -15792.407195 eV Core-core repulsion = 12929.352176 eV Total energy + Delta-G solvation = -2863.055019 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.80580 -40.17247 -39.48325 -38.18392 -36.36556 -34.63740 -31.90944 -30.73777 -28.03218 -26.02255 -23.61510 -22.83782 -21.91138 -20.14763 -19.33554 -18.00954 -17.89013 -17.30164 -17.02130 -16.30004 -15.92292 -15.82427 -15.45243 -15.06778 -14.99243 -14.07626 -13.98637 -13.57307 -13.21360 -12.88136 -12.69159 -12.26232 -11.98122 -11.74788 -11.59323 -10.77256 -10.34327 -9.94328 -9.37590 -9.01593 -6.44310 -1.06494 0.16192 0.72491 1.45856 1.57379 1.77362 1.88718 2.10184 2.44808 2.53051 2.68894 2.94949 3.29358 3.44843 3.65011 4.12544 4.27545 4.40713 4.78843 4.92573 5.15357 5.22234 5.27552 5.60816 5.65293 5.72828 6.15766 6.38127 6.81133 6.89848 7.34994 8.21562 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.010389 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.074030 B = 2694.587841 C = 3614.099516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C -0.015 4.015 3 Si 1.129 2.871 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.461 4.461 8 H 0.112 0.888 9 N -0.379 5.379 10 C 0.379 3.621 11 O -0.521 6.521 12 C 0.397 3.603 13 O -0.426 6.426 14 C -0.284 4.284 15 C 0.020 3.980 16 C -0.183 4.183 17 C 0.201 3.799 18 O -0.495 6.495 19 C -0.191 4.191 20 C 0.189 3.811 21 H 0.258 0.742 22 H 0.164 0.836 23 H 0.181 0.819 24 H 0.422 0.578 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -12.320 -6.804 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.224 4.224 3 Si 0.946 3.054 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.586 4.586 8 H 0.130 0.870 9 N -0.088 5.088 10 C 0.169 3.831 11 O -0.401 6.401 12 C 0.272 3.728 13 O -0.300 6.300 14 C -0.288 4.288 15 C 0.002 3.998 16 C -0.202 4.202 17 C 0.154 3.846 18 O -0.310 6.310 19 C -0.213 4.213 20 C 0.091 3.909 21 H 0.068 0.932 22 H 0.182 0.818 23 H 0.198 0.802 24 H 0.285 0.715 25 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.849 -10.277 -5.567 13.069 hybrid contribution -0.511 -1.120 -0.231 1.253 sum 5.337 -11.397 -5.798 13.856 Atomic orbital electron populations 1.70586 1.09070 1.30684 1.36093 1.28237 0.95573 1.06604 0.92032 0.82824 0.74270 0.69500 0.78841 1.20770 1.20196 1.16454 1.20680 1.04470 0.88315 1.45102 0.87012 1.41451 1.37718 1.05150 1.24485 1.21192 0.86981 0.91569 0.83327 1.90666 1.56825 1.39176 1.53440 1.22555 0.78267 0.90270 0.81729 1.90463 1.29129 1.80450 1.29926 1.20547 1.08376 0.96121 1.03751 1.20920 0.93858 0.90571 0.94486 1.21572 0.98884 1.01920 0.97815 1.18340 0.87536 0.88657 0.90028 1.84642 1.38811 1.85419 1.22114 1.20678 1.03669 0.96356 1.00581 1.19053 0.94126 0.83958 0.93741 0.93208 0.81806 0.80208 0.71540 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.92 12.09 21.74 0.26 -50.66 15 2 C -0.01 -0.81 4.54 85.10 0.39 -0.42 15 3 Si 1.13 47.62 30.01 68.60 2.06 49.68 15 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 5 H -0.28 -11.43 7.11 99.48 0.71 -10.73 15 6 H -0.24 -8.57 7.11 99.48 0.71 -7.87 15 7 C -0.46 -24.70 9.52 84.27 0.80 -23.90 15 8 H 0.11 5.50 7.98 -2.91 -0.02 5.48 15 9 N -0.38 -19.76 2.66 -459.94 -1.22 -20.98 15 10 C 0.38 21.29 6.86 87.28 0.60 21.88 15 11 O -0.52 -33.43 15.34 -3.61 -0.06 -33.48 15 12 C 0.40 18.83 7.94 27.70 0.22 19.05 15 13 O -0.43 -20.63 18.04 -3.59 -0.06 -20.70 15 14 C -0.28 -10.86 6.34 -19.97 -0.13 -10.98 15 15 C 0.02 0.53 10.10 22.48 0.23 0.76 15 16 C -0.18 -3.83 9.98 22.39 0.22 -3.61 15 17 C 0.20 4.87 6.71 22.68 0.15 5.02 15 18 O -0.49 -8.97 13.47 -89.55 -1.21 -10.18 15 19 C -0.19 -6.34 9.76 22.53 0.22 -6.12 15 20 C 0.19 7.92 6.68 38.53 0.26 8.18 15 21 H 0.26 16.38 7.21 -92.71 -0.67 15.71 15 22 H 0.16 3.37 8.06 -2.91 -0.02 3.35 15 23 H 0.18 2.26 8.06 -2.91 -0.02 2.24 15 24 H 0.42 3.14 9.06 -74.06 -0.67 2.47 15 25 H 0.14 4.47 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -76.22 239.76 3.42 -72.80 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 0.69 Total: 3.66 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 2.96 Total: 9.86 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.96 Total: -71.64 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -1.33 Total: -64.36 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.06 Total: 49.68 kcal Total: -76.22 3.42 -72.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369920.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.560 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds