Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 110.06509 * 2 1 4 4 C 1.38675 * 120.41403 * 150.39740 * 3 2 1 5 5 C 1.38629 * 118.41304 * 179.78290 * 4 3 2 6 6 C 1.38227 * 119.16445 * 0.47331 * 5 4 3 7 7 N 1.31857 * 120.76291 * 359.76803 * 6 5 4 8 8 C 1.31885 * 121.72432 * 0.02562 * 7 6 5 9 9 N 1.47899 * 109.92121 * 121.20930 * 2 1 3 10 10 C 1.48525 * 105.82053 * 94.02223 * 9 2 1 11 11 C 1.54936 * 103.23000 * 39.20688 * 10 9 2 12 12 C 1.53998 * 109.91469 * 238.79913 * 2 1 3 13 13 H 1.08995 * 110.30976 * 0.78501 * 12 2 1 14 14 C 1.50709 * 110.30735 * 122.95321 * 12 2 1 15 15 H 1.08004 * 119.99882 * 353.47355 * 14 12 2 16 16 C 1.37873 * 119.99446 * 173.46900 * 14 12 2 17 17 N 1.31511 * 120.00449 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99606 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47420 * 90.00332 * 18 16 14 20 20 H 1.48505 * 109.47215 * 210.00438 * 18 16 14 21 21 H 1.48502 * 109.47290 * 330.00099 * 18 16 14 22 22 H 1.08996 * 109.46980 * 181.20395 * 1 2 3 23 23 H 1.08997 * 109.46715 * 301.20001 * 1 2 3 24 24 H 1.08994 * 109.47183 * 61.20347 * 1 2 3 25 25 H 1.07994 * 120.79571 * 0.02562 * 4 3 2 26 26 H 1.08005 * 120.41902 * 180.22422 * 5 4 3 27 27 H 1.07997 * 119.61555 * 179.78759 * 6 5 4 28 28 H 1.07995 * 119.61700 * 180.02562 * 8 7 6 29 29 H 1.00901 * 110.99870 * 214.53954 * 9 2 1 30 30 H 1.09001 * 110.66923 * 280.77074 * 10 9 2 31 31 H 1.09004 * 110.81168 * 157.71531 * 10 9 2 32 32 H 1.09000 * 110.72895 * 204.22706 * 11 10 9 33 33 H 1.09007 * 110.72371 * 80.94332 * 11 10 9 34 34 H 0.97009 * 119.99938 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4156 0.0000 4 6 3.2646 1.7183 0.5908 5 6 3.7026 3.0333 0.5628 6 6 2.9122 3.9939 -0.0398 7 7 1.7571 3.6703 -0.5874 8 6 1.3110 2.4292 -0.5831 9 7 2.0339 -0.7205 1.1893 10 6 2.2662 -2.1192 0.7470 11 6 2.8536 -1.9482 -0.6764 12 6 2.0546 -0.7501 -1.2385 13 1 1.2225 -1.1027 -1.8478 14 6 2.9556 0.1453 -2.0495 15 1 3.0626 1.1868 -1.7842 16 6 3.6432 -0.3652 -3.1300 17 7 3.5125 -1.6333 -3.4532 18 14 4.7606 0.7444 -4.1349 19 1 6.1313 0.7143 -3.5642 20 1 4.7989 0.2664 -5.5403 21 1 4.2399 2.1347 -4.0990 22 1 -0.3633 -1.0274 0.0216 23 1 -0.3633 0.5324 0.8790 24 1 -0.3633 0.4950 -0.9005 25 1 3.8594 0.9474 1.0579 26 1 4.6476 3.3046 1.0099 27 1 3.2447 5.0211 -0.0627 28 1 0.3601 2.2023 -1.0420 29 1 2.8867 -0.3029 1.5306 30 1 1.3276 -2.6725 0.7119 31 1 2.9812 -2.6185 1.4009 32 1 2.6804 -2.8423 -1.2753 33 1 3.9173 -1.7144 -0.6292 34 1 3.9961 -1.9923 -4.2137 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = 42.001085 kcal Electronic energy + Delta-G solvation = -16900.015972 eV Core-core repulsion = 14411.695026 eV Total energy + Delta-G solvation = -2488.320946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15337 -37.80698 -32.80906 -32.21524 -31.63766 -28.97494 -28.71208 -26.16410 -23.75908 -22.79199 -22.31287 -20.14153 -18.62337 -17.26264 -16.23441 -15.57535 -15.20818 -14.83614 -14.03695 -13.88442 -13.29471 -12.96503 -12.73696 -12.58675 -12.21347 -11.91732 -11.47726 -11.39473 -11.09182 -10.91691 -10.73923 -10.47804 -10.37025 -9.84864 -9.42468 -9.15526 -8.92924 -8.76374 -8.46860 -8.17447 -7.76594 -6.08545 -4.11146 1.76291 1.92931 3.24978 3.32714 3.38394 4.38559 4.42253 4.91151 5.00629 5.24083 5.30832 5.36950 5.56396 5.66804 5.78337 5.97913 6.05714 6.15304 6.21744 6.32046 6.37351 6.43020 6.50715 6.66936 6.69735 6.88161 7.06801 7.11418 7.29350 7.41750 7.56136 7.80396 7.91777 7.95449 8.32155 8.55844 8.90581 9.54686 11.00585 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.014715 C = 0.009790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.068659 B = 1902.328964 C = 2859.494077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.132 3.868 3 C -0.055 4.055 4 C -0.077 4.077 5 C -0.171 4.171 6 C 0.067 3.933 7 N -0.486 5.486 8 C 0.096 3.904 9 N -0.671 5.671 10 C 0.030 3.970 11 C -0.119 4.119 12 C 0.040 3.960 13 H 0.035 0.965 14 C -0.517 4.517 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.328 0.672 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 3.530 7.644 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.040 3.960 3 C -0.057 4.057 4 C -0.103 4.103 5 C -0.191 4.191 6 C -0.090 4.090 7 N -0.194 5.194 8 C -0.061 4.061 9 N -0.301 5.301 10 C -0.099 4.099 11 C -0.159 4.159 12 C 0.021 3.979 13 H 0.053 0.947 14 C -0.555 4.555 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.710 3.290 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.146 0.854 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.310 3.946 7.469 8.757 hybrid contribution 2.266 -0.149 -0.986 2.476 sum -0.044 3.796 6.483 7.513 Atomic orbital electron populations 1.21746 0.94221 1.01535 1.00524 1.20825 0.94517 0.88897 0.91750 1.20649 0.94315 0.96352 0.94413 1.21203 0.95251 0.95998 0.97845 1.21935 1.00865 0.94168 1.02150 1.22465 0.91128 0.99300 0.96075 1.67585 1.14712 1.21029 1.16095 1.22514 0.99764 0.87457 0.96398 1.63048 1.33751 1.03075 1.30214 1.23213 0.99544 0.90229 0.96933 1.22933 0.99687 1.00251 0.93008 1.19878 0.95411 0.92068 0.90585 0.94703 1.21393 1.26023 0.96032 1.12047 0.91657 1.24931 0.96668 0.94825 0.97130 1.69979 1.42231 1.12561 1.27722 0.86730 0.81210 0.81345 0.79700 1.20784 1.21192 1.19832 0.92622 0.93283 0.92400 0.85672 0.85753 0.83882 0.83192 0.85355 0.91493 0.92496 0.91818 0.92719 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 7.87 37.16 0.29 -1.84 16 2 C 0.13 2.57 1.02 -131.68 -0.13 2.43 16 3 C -0.05 -1.06 2.80 -104.48 -0.29 -1.36 16 4 C -0.08 -1.38 8.38 -39.28 -0.33 -1.71 16 5 C -0.17 -2.79 10.11 -39.44 -0.40 -3.19 16 6 C 0.07 1.14 11.18 -17.54 -0.20 0.94 16 7 N -0.49 -9.32 10.36 -13.26 -0.14 -9.46 16 8 C 0.10 1.86 9.71 -17.55 -0.17 1.69 16 9 N -0.67 -12.11 7.02 -97.62 -0.69 -12.79 16 10 C 0.03 0.55 7.54 -1.90 -0.01 0.53 16 11 C -0.12 -2.64 5.38 -24.87 -0.13 -2.77 16 12 C 0.04 0.94 2.63 -90.41 -0.24 0.70 16 13 H 0.03 0.89 7.68 -51.93 -0.40 0.49 16 14 C -0.52 -13.39 7.66 -34.44 -0.26 -13.66 16 15 H 0.07 1.71 4.67 -52.48 -0.25 1.47 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -24.74 12.16 55.43 0.67 -24.07 16 18 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.98 6.67 -51.93 -0.35 0.63 16 25 H 0.13 2.10 6.18 -52.49 -0.32 1.77 16 26 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.15 2.72 6.25 -52.49 -0.33 2.39 16 29 H 0.33 5.66 5.87 -39.29 -0.23 5.43 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.51 7.95 -51.93 -0.41 1.09 16 33 H 0.05 1.31 7.85 -51.92 -0.41 0.90 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 270.08 15.07 4.07 4.07 Total: -1.00 -28.51 270.08 -7.44 -35.95 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.37 Total: 6.41 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.97 Total: -16.53 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.15 Total: -46.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.51 -7.44 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.951 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds