Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 110.06509 * 2 1 4 4 C 1.38675 * 120.41403 * 150.39740 * 3 2 1 5 5 C 1.38629 * 118.41304 * 179.78290 * 4 3 2 6 6 C 1.38227 * 119.16445 * 0.47331 * 5 4 3 7 7 N 1.31857 * 120.76291 * 359.76803 * 6 5 4 8 8 C 1.31885 * 121.72432 * 0.02562 * 7 6 5 9 9 N 1.47899 * 109.92121 * 121.20930 * 2 1 3 10 10 C 1.48525 * 105.82053 * 94.02223 * 9 2 1 11 11 C 1.54936 * 103.23000 * 39.20688 * 10 9 2 12 12 C 1.53998 * 109.91469 * 238.79913 * 2 1 3 13 13 H 1.08995 * 110.30976 * 0.78501 * 12 2 1 14 14 C 1.50709 * 110.30735 * 122.95321 * 12 2 1 15 15 H 1.08004 * 119.99882 * 353.47355 * 14 12 2 16 16 C 1.37873 * 119.99446 * 173.46900 * 14 12 2 17 17 N 1.31511 * 120.00449 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99606 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47420 * 90.00332 * 18 16 14 20 20 H 1.48505 * 109.47215 * 210.00438 * 18 16 14 21 21 H 1.48502 * 109.47290 * 330.00099 * 18 16 14 22 22 H 1.08996 * 109.46980 * 181.20395 * 1 2 3 23 23 H 1.08997 * 109.46715 * 301.20001 * 1 2 3 24 24 H 1.08994 * 109.47183 * 61.20347 * 1 2 3 25 25 H 1.07994 * 120.79571 * 0.02562 * 4 3 2 26 26 H 1.08005 * 120.41902 * 180.22422 * 5 4 3 27 27 H 1.07997 * 119.61555 * 179.78759 * 6 5 4 28 28 H 1.07995 * 119.61700 * 180.02562 * 8 7 6 29 29 H 1.00901 * 110.99870 * 214.53954 * 9 2 1 30 30 H 1.09001 * 110.66923 * 280.77074 * 10 9 2 31 31 H 1.09004 * 110.81168 * 157.71531 * 10 9 2 32 32 H 1.09000 * 110.72895 * 204.22706 * 11 10 9 33 33 H 1.09007 * 110.72371 * 80.94332 * 11 10 9 34 34 H 0.97009 * 119.99938 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4156 0.0000 4 6 3.2646 1.7183 0.5908 5 6 3.7026 3.0333 0.5628 6 6 2.9122 3.9939 -0.0398 7 7 1.7571 3.6703 -0.5874 8 6 1.3110 2.4292 -0.5831 9 7 2.0339 -0.7205 1.1893 10 6 2.2662 -2.1192 0.7470 11 6 2.8536 -1.9482 -0.6764 12 6 2.0546 -0.7501 -1.2385 13 1 1.2225 -1.1027 -1.8478 14 6 2.9556 0.1453 -2.0495 15 1 3.0626 1.1868 -1.7842 16 6 3.6432 -0.3652 -3.1300 17 7 3.5125 -1.6333 -3.4532 18 14 4.7606 0.7444 -4.1349 19 1 6.1313 0.7143 -3.5642 20 1 4.7989 0.2664 -5.5403 21 1 4.2399 2.1347 -4.0990 22 1 -0.3633 -1.0274 0.0216 23 1 -0.3633 0.5324 0.8790 24 1 -0.3633 0.4950 -0.9005 25 1 3.8594 0.9474 1.0579 26 1 4.6476 3.3046 1.0099 27 1 3.2447 5.0211 -0.0627 28 1 0.3601 2.2023 -1.0420 29 1 2.8867 -0.3029 1.5306 30 1 1.3276 -2.6725 0.7119 31 1 2.9812 -2.6185 1.4009 32 1 2.6804 -2.8423 -1.2753 33 1 3.9173 -1.7144 -0.6292 34 1 3.9961 -1.9923 -4.2137 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = 23.670659 kcal Electronic energy + Delta-G solvation = -16900.810839 eV Core-core repulsion = 14411.695026 eV Total energy + Delta-G solvation = -2489.115813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60626 -39.32661 -34.78902 -33.69280 -33.00672 -30.73506 -30.16133 -27.83906 -25.52652 -24.18341 -23.77913 -21.81395 -20.23299 -18.78708 -17.98081 -16.97283 -16.81858 -16.62351 -15.78900 -15.21542 -14.87507 -14.57231 -14.29687 -14.06648 -13.62694 -13.49504 -13.22277 -13.01095 -12.93670 -12.53726 -12.47158 -12.24424 -11.90922 -11.61490 -11.13335 -10.85091 -10.51551 -10.45703 -10.23403 -9.66372 -9.28664 -8.14481 -6.20079 0.39715 0.53698 1.30762 1.34918 1.42668 2.38008 3.02814 3.18118 3.43971 3.67669 3.91282 4.01291 4.21855 4.27695 4.40131 4.47692 4.59116 4.66975 4.77030 4.83188 4.89788 5.00332 5.04975 5.18898 5.28586 5.29891 5.43527 5.57002 5.62817 5.71356 5.85185 5.96622 6.12299 6.31032 6.54916 6.89829 7.18151 7.47244 8.94212 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.014715 C = 0.009790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.068659 B = 1902.328964 C = 2859.494077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.138 3.862 3 C -0.074 4.074 4 C -0.089 4.089 5 C -0.165 4.165 6 C 0.062 3.938 7 N -0.506 5.506 8 C 0.079 3.921 9 N -0.660 5.660 10 C 0.042 3.958 11 C -0.111 4.111 12 C 0.034 3.966 13 H 0.004 0.996 14 C -0.513 4.513 15 H 0.064 0.936 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 0.933 3.067 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.178 0.822 28 H 0.151 0.849 29 H 0.334 0.666 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.032 0.968 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 4.695 9.102 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.046 3.954 3 C -0.077 4.077 4 C -0.115 4.115 5 C -0.185 4.185 6 C -0.095 4.095 7 N -0.215 5.215 8 C -0.078 4.078 9 N -0.290 5.290 10 C -0.087 4.087 11 C -0.151 4.151 12 C 0.014 3.986 13 H 0.022 0.978 14 C -0.551 4.551 15 H 0.082 0.918 16 C -0.180 4.180 17 N -0.555 5.555 18 Si 0.760 3.240 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.179 0.821 27 H 0.195 0.805 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.591 5.116 8.938 10.421 hybrid contribution 2.055 -0.448 -1.425 2.540 sum 0.463 4.669 7.513 8.857 Atomic orbital electron populations 1.21704 0.92928 1.01838 1.01186 1.20663 0.95587 0.88947 0.90228 1.20676 0.95298 0.96003 0.95719 1.21487 0.94909 0.97338 0.97797 1.22346 1.01958 0.93134 1.01048 1.23121 0.90306 1.01155 0.94891 1.67608 1.16044 1.20868 1.16974 1.22603 1.00237 0.87906 0.97038 1.63065 1.34054 1.02801 1.29095 1.23166 1.00326 0.90695 0.94525 1.22721 0.98304 0.98656 0.95436 1.19842 0.94197 0.92700 0.91869 0.97829 1.21695 1.25387 0.96249 1.11814 0.91826 1.25567 0.98229 0.95800 0.98424 1.70090 1.43399 1.13743 1.28262 0.85934 0.80009 0.79500 0.78536 1.20129 1.21252 1.20337 0.92504 0.91783 0.92554 0.84699 0.82056 0.80524 0.83182 0.84664 0.90602 0.89852 0.94258 0.94895 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 7.87 71.98 0.57 -3.49 16 2 C 0.14 5.25 1.02 2.93 0.00 5.25 16 3 C -0.07 -2.80 2.80 -19.77 -0.06 -2.85 16 4 C -0.09 -3.01 8.38 22.47 0.19 -2.82 16 5 C -0.17 -4.84 10.11 22.36 0.23 -4.62 16 6 C 0.06 1.92 11.18 84.69 0.95 2.87 16 7 N -0.51 -18.62 10.36 -195.85 -2.03 -20.65 16 8 C 0.08 2.99 9.71 84.67 0.82 3.81 16 9 N -0.66 -22.55 7.02 -462.78 -3.25 -25.80 16 10 C 0.04 1.46 7.54 86.65 0.65 2.11 16 11 C -0.11 -4.97 5.38 31.80 0.17 -4.79 16 12 C 0.03 1.58 2.63 -10.66 -0.03 1.56 16 13 H 0.00 0.19 7.68 -2.39 -0.02 0.17 16 14 C -0.51 -26.73 7.66 25.60 0.20 -26.54 16 15 H 0.06 3.31 4.67 -2.91 -0.01 3.30 16 16 C 0.02 1.02 5.30 84.65 0.45 1.46 16 17 N -0.92 -52.13 12.16 21.45 0.26 -51.87 16 18 Si 0.93 44.13 29.54 68.60 2.03 46.16 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.90 6.67 -2.39 -0.02 1.89 16 25 H 0.14 4.20 6.18 -2.91 -0.02 4.18 16 26 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.15 5.47 6.25 -2.91 -0.02 5.45 16 29 H 0.33 10.75 5.87 -89.69 -0.53 10.22 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.04 1.90 7.95 -2.39 -0.02 1.88 16 33 H 0.03 1.57 7.85 -2.38 -0.02 1.55 16 34 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -60.90 270.08 1.72 -59.18 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.58 Total: 21.03 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 4.14 Total: -28.05 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -5.02 Total: -98.31 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.90 1.72 -59.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.846 kcal (2) G-P(sol) polarization free energy of solvation -60.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds