Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.88096 * 2 1 4 4 C 1.38672 * 120.41531 * 270.41933 * 3 2 1 5 5 C 1.38637 * 118.41744 * 179.78215 * 4 3 2 6 6 C 1.38230 * 119.15940 * 0.47518 * 5 4 3 7 7 N 1.31856 * 120.76444 * 359.76897 * 6 5 4 8 8 C 1.31887 * 121.72711 * 359.97438 * 7 6 5 9 9 N 1.47441 * 109.88835 * 238.96595 * 2 1 3 10 10 C 1.47842 * 108.56911 * 239.60591 * 9 2 1 11 11 C 1.54912 * 104.79550 * 24.09875 * 10 9 2 12 12 C 1.54320 * 109.88781 * 121.03192 * 2 1 3 13 13 H 1.08995 * 110.70471 * 215.50326 * 12 2 1 14 14 C 1.50707 * 110.70580 * 338.73572 * 12 2 1 15 15 H 1.08005 * 119.99375 * 34.92038 * 14 12 2 16 16 C 1.37870 * 120.00293 * 214.91950 * 14 12 2 17 17 N 1.31518 * 120.00097 * 173.78686 * 16 14 12 18 18 Si 1.86805 * 119.99918 * 353.78892 * 16 14 12 19 19 H 1.48501 * 109.46992 * 84.85684 * 18 16 14 20 20 H 1.48504 * 109.46776 * 204.85766 * 18 16 14 21 21 H 1.48500 * 109.46800 * 324.85787 * 18 16 14 22 22 H 1.09004 * 109.47110 * 66.27593 * 1 2 3 23 23 H 1.09003 * 109.47188 * 306.28316 * 1 2 3 24 24 H 1.08998 * 109.47492 * 186.28339 * 1 2 3 25 25 H 1.07991 * 120.79361 * 0.02562 * 4 3 2 26 26 H 1.07996 * 120.41471 * 180.26619 * 5 4 3 27 27 H 1.07995 * 119.61707 * 179.74605 * 6 5 4 28 28 H 1.07996 * 119.61654 * 180.02562 * 8 7 6 29 29 H 1.00898 * 111.00219 * 117.33922 * 9 2 1 30 30 H 1.08997 * 110.37633 * 142.92319 * 10 9 2 31 31 H 1.08998 * 110.37687 * 265.26707 * 10 9 2 32 32 H 1.09000 * 110.99298 * 81.01570 * 11 10 9 33 33 H 1.08999 * 110.99055 * 204.84132 * 11 10 9 34 34 H 0.97001 * 119.99670 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 6 2.2730 2.0804 -1.1958 5 6 2.7401 3.3848 -1.1475 6 6 2.9684 3.9732 0.0823 7 7 2.7428 3.3103 1.1995 8 6 2.2937 2.0703 1.1916 9 7 2.0316 -0.7148 -1.1880 10 6 2.8585 -1.8545 -0.7375 11 6 2.3500 -2.1719 0.6910 12 6 2.0550 -0.7481 1.2435 13 1 2.9666 -0.2820 1.6173 14 6 1.0008 -0.7987 2.3193 15 1 -0.0411 -0.8907 2.0504 16 6 1.3666 -0.7276 3.6467 17 7 0.4432 -0.6485 4.5799 18 14 3.1737 -0.7435 4.1198 19 1 3.7184 0.6357 4.0399 20 1 3.3176 -1.2530 5.5072 21 1 3.9214 -1.6257 3.1883 22 1 -0.3633 0.4135 -0.9409 23 1 -0.3634 0.6082 0.8284 24 1 -0.3634 -1.0214 0.1125 25 1 2.0892 1.5938 -2.1422 26 1 2.9265 3.9329 -2.0591 27 1 3.3362 4.9876 0.1285 28 1 2.1203 1.5595 2.1271 29 1 2.5614 -0.0973 -1.7847 30 1 2.7105 -2.7131 -1.3924 31 1 3.9111 -1.5728 -0.7117 32 1 1.4420 -2.7740 0.6574 33 1 3.1228 -2.6660 1.2798 34 1 0.7006 -0.5988 5.5139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = 40.045271 kcal Electronic energy + Delta-G solvation = -16787.587086 eV Core-core repulsion = 14299.181330 eV Total energy + Delta-G solvation = -2488.405756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23102 -37.98030 -32.94648 -32.42549 -31.53978 -29.90231 -28.97339 -25.66449 -24.14264 -23.17054 -22.40141 -20.02182 -18.60749 -17.34411 -16.77416 -15.78986 -15.62335 -14.54968 -14.16561 -13.77317 -13.56774 -13.38338 -12.98018 -12.62562 -12.33764 -12.02268 -11.68265 -11.50064 -11.22674 -10.96755 -10.66477 -10.46752 -10.09506 -9.74968 -9.73870 -9.40994 -9.13414 -9.01326 -8.61002 -8.47209 -7.94887 -6.14533 -4.12605 1.50585 1.62505 3.24005 3.33101 3.34898 4.20404 4.34898 4.71150 4.82466 5.06528 5.09409 5.27480 5.33793 5.51109 5.60083 5.80913 5.83743 5.97478 6.16474 6.21446 6.22993 6.38147 6.47815 6.58827 6.69068 6.75682 6.84174 6.96615 7.11437 7.16896 7.22292 7.52137 7.68189 7.85789 8.40340 8.46435 8.92396 9.47456 10.97190 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.012354 C = 0.009723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.298247 B = 2265.932261 C = 2878.931555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.147 3.853 3 C -0.125 4.125 4 C -0.087 4.087 5 C -0.180 4.180 6 C 0.079 3.921 7 N -0.487 5.487 8 C 0.115 3.885 9 N -0.677 5.677 10 C 0.041 3.959 11 C -0.129 4.129 12 C 0.011 3.989 13 H 0.036 0.964 14 C -0.510 4.510 15 H 0.090 0.910 16 C 0.076 3.924 17 N -0.891 5.891 18 Si 0.859 3.141 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.267 1.267 22 H 0.030 0.970 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.173 0.827 29 H 0.325 0.675 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 3.744 -10.736 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.200 4.200 6 C -0.078 4.078 7 N -0.195 5.195 8 C -0.041 4.041 9 N -0.307 5.307 10 C -0.088 4.088 11 C -0.168 4.168 12 C -0.009 4.009 13 H 0.054 0.946 14 C -0.547 4.547 15 H 0.108 0.892 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.686 3.314 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.165 0.835 28 H 0.190 0.810 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.535 3.786 -9.846 11.483 hybrid contribution 1.736 0.072 -0.194 1.749 sum 6.271 3.858 -10.040 12.451 Atomic orbital electron populations 1.21578 0.92266 1.02311 0.99373 1.20607 0.96242 0.86545 0.90986 1.21549 0.98485 0.98855 0.93886 1.21444 0.97077 0.94392 0.98414 1.22000 1.02630 0.96115 0.99248 1.22702 0.97263 0.99654 0.88185 1.67794 1.11691 1.08922 1.31096 1.23242 0.92006 0.89549 0.99345 1.62158 1.39522 1.11404 1.17614 1.22836 0.94184 0.93984 0.97787 1.23077 1.00395 1.00466 0.92828 1.20473 0.96528 0.90947 0.92959 0.94600 1.21072 0.94499 1.50452 0.88698 0.89203 1.25025 0.96546 0.94416 0.96644 1.69878 1.32828 1.49414 1.00716 0.87153 0.86945 0.79246 0.78033 1.19699 1.21336 1.19155 0.95104 0.91482 0.91893 0.84949 0.85456 0.83511 0.81013 0.85742 0.91491 0.95329 0.90856 0.92525 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 7.38 37.16 0.27 -1.65 16 2 C 0.15 2.85 1.00 -131.77 -0.13 2.72 16 3 C -0.12 -2.32 4.77 -104.48 -0.50 -2.82 16 4 C -0.09 -1.33 8.95 -39.27 -0.35 -1.68 16 5 C -0.18 -2.47 10.11 -39.44 -0.40 -2.87 16 6 C 0.08 1.22 11.18 -17.54 -0.20 1.02 16 7 N -0.49 -9.44 10.36 -13.25 -0.14 -9.58 16 8 C 0.12 2.39 9.93 -17.55 -0.17 2.21 16 9 N -0.68 -11.60 6.92 -98.29 -0.68 -12.28 16 10 C 0.04 0.70 7.57 -2.30 -0.02 0.68 16 11 C -0.13 -2.59 6.53 -24.37 -0.16 -2.75 16 12 C 0.01 0.24 1.16 -89.72 -0.10 0.14 16 13 H 0.04 0.83 4.51 -51.93 -0.23 0.59 16 14 C -0.51 -13.03 7.14 -34.44 -0.25 -13.28 16 15 H 0.09 2.47 5.84 -52.48 -0.31 2.16 16 16 C 0.08 2.07 5.35 -17.82 -0.10 1.97 16 17 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 18 Si 0.86 20.74 26.49 -169.99 -4.50 16.24 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.22 6.79 56.52 0.38 -5.84 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 1.43 7.16 -51.93 -0.37 1.06 16 24 H 0.06 1.29 7.47 -51.93 -0.39 0.90 16 25 H 0.13 1.72 6.73 -52.49 -0.35 1.37 16 26 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.17 4.01 5.75 -52.49 -0.30 3.71 16 29 H 0.33 4.93 6.10 -39.29 -0.24 4.69 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 1.51 8.05 -51.93 -0.42 1.09 16 33 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 268.10 15.07 4.04 4.04 Total: -1.00 -28.41 268.10 -6.89 -35.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.29 Total: 7.68 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.10 Total: -16.31 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.04 Total: -46.96 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.50 Total: 16.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.41 -6.89 -35.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.348 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds