Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.88096 * 2 1 4 4 C 1.38672 * 120.41531 * 270.41933 * 3 2 1 5 5 C 1.38637 * 118.41744 * 179.78215 * 4 3 2 6 6 C 1.38230 * 119.15940 * 0.47518 * 5 4 3 7 7 N 1.31856 * 120.76444 * 359.76897 * 6 5 4 8 8 C 1.31887 * 121.72711 * 359.97438 * 7 6 5 9 9 N 1.47441 * 109.88835 * 238.96595 * 2 1 3 10 10 C 1.47842 * 108.56911 * 239.60591 * 9 2 1 11 11 C 1.54912 * 104.79550 * 24.09875 * 10 9 2 12 12 C 1.54320 * 109.88781 * 121.03192 * 2 1 3 13 13 H 1.08995 * 110.70471 * 215.50326 * 12 2 1 14 14 C 1.50707 * 110.70580 * 338.73572 * 12 2 1 15 15 H 1.08005 * 119.99375 * 34.92038 * 14 12 2 16 16 C 1.37870 * 120.00293 * 214.91950 * 14 12 2 17 17 N 1.31518 * 120.00097 * 173.78686 * 16 14 12 18 18 Si 1.86805 * 119.99918 * 353.78892 * 16 14 12 19 19 H 1.48501 * 109.46992 * 84.85684 * 18 16 14 20 20 H 1.48504 * 109.46776 * 204.85766 * 18 16 14 21 21 H 1.48500 * 109.46800 * 324.85787 * 18 16 14 22 22 H 1.09004 * 109.47110 * 66.27593 * 1 2 3 23 23 H 1.09003 * 109.47188 * 306.28316 * 1 2 3 24 24 H 1.08998 * 109.47492 * 186.28339 * 1 2 3 25 25 H 1.07991 * 120.79361 * 0.02562 * 4 3 2 26 26 H 1.07996 * 120.41471 * 180.26619 * 5 4 3 27 27 H 1.07995 * 119.61707 * 179.74605 * 6 5 4 28 28 H 1.07996 * 119.61654 * 180.02562 * 8 7 6 29 29 H 1.00898 * 111.00219 * 117.33922 * 9 2 1 30 30 H 1.08997 * 110.37633 * 142.92319 * 10 9 2 31 31 H 1.08998 * 110.37687 * 265.26707 * 10 9 2 32 32 H 1.09000 * 110.99298 * 81.01570 * 11 10 9 33 33 H 1.08999 * 110.99055 * 204.84132 * 11 10 9 34 34 H 0.97001 * 119.99670 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 6 2.2730 2.0804 -1.1958 5 6 2.7401 3.3848 -1.1475 6 6 2.9684 3.9732 0.0823 7 7 2.7428 3.3103 1.1995 8 6 2.2937 2.0703 1.1916 9 7 2.0316 -0.7148 -1.1880 10 6 2.8585 -1.8545 -0.7375 11 6 2.3500 -2.1719 0.6910 12 6 2.0550 -0.7481 1.2435 13 1 2.9666 -0.2820 1.6173 14 6 1.0008 -0.7987 2.3193 15 1 -0.0411 -0.8907 2.0504 16 6 1.3666 -0.7276 3.6467 17 7 0.4432 -0.6485 4.5799 18 14 3.1737 -0.7435 4.1198 19 1 3.7184 0.6357 4.0399 20 1 3.3176 -1.2530 5.5072 21 1 3.9214 -1.6257 3.1883 22 1 -0.3633 0.4135 -0.9409 23 1 -0.3634 0.6082 0.8284 24 1 -0.3634 -1.0214 0.1125 25 1 2.0892 1.5938 -2.1422 26 1 2.9265 3.9329 -2.0591 27 1 3.3362 4.9876 0.1285 28 1 2.1203 1.5595 2.1271 29 1 2.5614 -0.0973 -1.7847 30 1 2.7105 -2.7131 -1.3924 31 1 3.9111 -1.5728 -0.7117 32 1 1.4420 -2.7740 0.6574 33 1 3.1228 -2.6660 1.2798 34 1 0.7006 -0.5988 5.5139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = 20.102811 kcal Electronic energy + Delta-G solvation = -16788.451856 eV Core-core repulsion = 14299.181330 eV Total energy + Delta-G solvation = -2489.270526 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61524 -39.44244 -34.87487 -33.83115 -32.94502 -31.56292 -30.43897 -27.39257 -25.78950 -24.49754 -23.83528 -21.56079 -20.24762 -18.97709 -18.43411 -17.17233 -16.92845 -16.42267 -15.52372 -15.27536 -15.24058 -14.84150 -14.47600 -14.16196 -13.87388 -13.57314 -13.29115 -12.98251 -12.97632 -12.69547 -12.35479 -12.18452 -11.77546 -11.63109 -11.32291 -11.02118 -10.69099 -10.62484 -10.40647 -9.84664 -9.34592 -8.26492 -6.24624 0.21914 0.37346 1.27904 1.31634 1.37895 2.31728 2.89403 3.06390 3.29905 3.54890 3.84869 3.94912 4.13784 4.16330 4.25818 4.34991 4.40575 4.51531 4.74248 4.76998 4.89300 4.93546 5.02246 5.12651 5.15927 5.22744 5.31748 5.39441 5.46651 5.51956 5.70789 5.85222 6.05683 6.37695 6.59790 6.81083 7.09529 7.37188 8.88957 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.012354 C = 0.009723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.298247 B = 2265.932261 C = 2878.931555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.154 3.846 3 C -0.139 4.139 4 C -0.080 4.080 5 C -0.157 4.157 6 C 0.074 3.926 7 N -0.519 5.519 8 C 0.083 3.917 9 N -0.669 5.669 10 C 0.049 3.951 11 C -0.132 4.132 12 C 0.003 3.997 13 H 0.027 0.973 14 C -0.492 4.492 15 H 0.060 0.940 16 C 0.024 3.976 17 N -0.942 5.942 18 Si 0.913 3.087 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.250 1.250 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.164 0.836 26 H 0.178 0.822 27 H 0.183 0.817 28 H 0.129 0.871 29 H 0.342 0.658 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 4.690 -14.405 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.176 4.176 6 C -0.083 4.083 7 N -0.228 5.228 8 C -0.073 4.073 9 N -0.301 5.301 10 C -0.079 4.079 11 C -0.170 4.170 12 C -0.017 4.017 13 H 0.045 0.955 14 C -0.530 4.530 15 H 0.078 0.922 16 C -0.174 4.174 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.173 1.173 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.181 0.819 26 H 0.196 0.804 27 H 0.200 0.800 28 H 0.147 0.853 29 H 0.161 0.839 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.523 4.713 -13.542 15.753 hybrid contribution 1.079 -0.112 0.835 1.369 sum 7.602 4.601 -12.707 15.506 Atomic orbital electron populations 1.21432 0.93163 1.00791 0.99309 1.20300 0.95581 0.87405 0.90442 1.21400 0.99782 0.98395 0.94631 1.21789 0.95829 0.95037 0.97996 1.22507 0.99420 0.95312 1.00380 1.23404 0.96158 1.00851 0.87867 1.67690 1.12753 1.08676 1.33715 1.22714 0.95167 0.90736 0.98693 1.62106 1.40102 1.11440 1.16414 1.22831 0.94715 0.94695 0.95700 1.22989 1.00119 0.98611 0.95298 1.20445 0.94952 0.92962 0.93295 0.95517 1.21262 0.94259 1.47810 0.89703 0.92229 1.25660 0.99900 0.94941 0.96886 1.70013 1.34726 1.52604 1.00926 0.86277 0.83013 0.79108 0.77726 1.20138 1.21614 1.17329 0.92648 0.94581 0.93485 0.81861 0.80434 0.79979 0.85314 0.83873 0.88946 0.93818 0.92010 0.92617 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.54 7.38 71.98 0.53 -3.01 16 2 C 0.15 5.83 1.00 3.13 0.00 5.83 16 3 C -0.14 -4.96 4.77 -19.77 -0.09 -5.06 16 4 C -0.08 -2.11 8.95 22.47 0.20 -1.91 16 5 C -0.16 -3.47 10.11 22.36 0.23 -3.24 16 6 C 0.07 2.03 11.18 84.69 0.95 2.98 16 7 N -0.52 -19.82 10.36 -195.84 -2.03 -21.85 16 8 C 0.08 3.47 9.93 84.67 0.84 4.31 16 9 N -0.67 -20.71 6.92 -464.89 -3.22 -23.92 16 10 C 0.05 1.51 7.57 86.78 0.66 2.17 16 11 C -0.13 -5.15 6.53 32.13 0.21 -4.94 16 12 C 0.00 0.15 1.16 -10.21 -0.01 0.14 16 13 H 0.03 1.24 4.51 -2.39 -0.01 1.23 16 14 C -0.49 -26.45 7.14 25.60 0.18 -26.27 16 15 H 0.06 3.50 5.84 -2.91 -0.02 3.48 16 16 C 0.02 1.34 5.35 84.65 0.45 1.80 16 17 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 18 Si 0.91 44.50 26.49 68.60 1.82 46.32 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.25 -11.30 6.79 99.48 0.68 -10.63 16 22 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.04 1.62 7.16 -2.39 -0.02 1.60 16 24 H 0.05 1.97 7.47 -2.39 -0.02 1.95 16 25 H 0.16 3.25 6.73 -2.92 -0.02 3.23 16 26 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.13 6.42 5.75 -2.91 -0.02 6.40 16 29 H 0.34 8.72 6.10 -89.70 -0.55 8.17 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 33 H 0.06 2.16 7.82 -2.39 -0.02 2.14 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -66.10 268.10 1.55 -64.56 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.53 Total: 19.75 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.15 Total: -27.20 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.95 Total: -103.43 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.82 Total: 46.32 kcal Total: -66.10 1.55 -64.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.659 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds