Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 110.06343 * 2 1 4 4 C 1.38671 * 120.42184 * 37.93131 * 3 2 1 5 5 C 1.38620 * 118.41866 * 179.78273 * 4 3 2 6 6 C 1.38225 * 119.16632 * 0.47373 * 5 4 3 7 7 N 1.31859 * 120.75766 * 359.76623 * 6 5 4 8 8 C 1.31878 * 121.72654 * 0.02562 * 7 6 5 9 9 N 1.47900 * 109.91418 * 238.79350 * 2 1 3 10 10 C 1.48534 * 105.82048 * 265.97504 * 9 2 1 11 11 C 1.54927 * 103.22709 * 320.79608 * 10 9 2 12 12 C 1.53986 * 109.91625 * 121.20278 * 2 1 3 13 13 H 1.08997 * 110.40073 * 359.16936 * 12 2 1 14 14 C 1.50702 * 110.31101 * 237.03930 * 12 2 1 15 15 H 1.08001 * 119.99260 * 358.96207 * 14 12 2 16 16 C 1.37870 * 120.00500 * 178.95726 * 14 12 2 17 17 N 1.31522 * 119.99903 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00563 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47439 * 179.97438 * 18 16 14 20 20 H 1.48508 * 109.47044 * 300.00200 * 18 16 14 21 21 H 1.48505 * 109.47059 * 59.99494 * 18 16 14 22 22 H 1.09003 * 109.46846 * 298.79671 * 1 2 3 23 23 H 1.08994 * 109.47317 * 58.79757 * 1 2 3 24 24 H 1.08997 * 109.47110 * 178.80026 * 1 2 3 25 25 H 1.07995 * 120.78784 * 0.02562 * 4 3 2 26 26 H 1.08008 * 120.42129 * 180.22063 * 5 4 3 27 27 H 1.08001 * 119.62269 * 179.79311 * 6 5 4 28 28 H 1.08003 * 119.61642 * 179.97438 * 8 7 6 29 29 H 1.00901 * 111.00197 * 26.49480 * 9 2 1 30 30 H 1.09000 * 110.66708 * 202.35951 * 10 9 2 31 31 H 1.09000 * 110.80447 * 79.29587 * 10 9 2 32 32 H 1.08999 * 110.72334 * 279.05489 * 11 10 9 33 33 H 1.09000 * 110.88234 * 155.84643 * 11 10 9 34 34 H 0.96994 * 120.00368 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0471 1.4156 0.0000 4 6 1.4020 2.3987 0.7351 5 6 1.9158 3.6859 0.7089 6 6 3.0402 3.9471 -0.0514 7 7 3.6249 2.9880 -0.7421 8 6 3.1663 1.7515 -0.7374 9 7 2.0338 -0.7205 -1.1894 10 6 2.2661 -2.1193 -0.7472 11 6 2.8536 -1.9483 0.6761 12 6 2.0546 -0.7500 1.2383 13 1 1.2236 -1.1027 1.8492 14 6 2.9557 0.1451 2.0493 15 1 3.1592 1.1518 1.7152 16 6 3.5203 -0.3209 3.2176 17 7 3.2728 -1.5469 3.6242 18 14 4.6367 0.7890 4.2232 19 1 5.1108 0.0565 5.4248 20 1 5.8029 1.1960 3.3987 21 1 3.8834 1.9970 4.6457 22 1 -0.3633 0.4951 0.9006 23 1 -0.3633 0.5324 -0.8789 24 1 -0.3633 -1.0274 -0.0215 25 1 0.5226 2.1662 1.3172 26 1 1.4412 4.4758 1.2723 27 1 3.4448 4.9480 -0.0798 28 1 3.6718 0.9926 -1.3162 29 1 1.3644 -0.6860 -1.9435 30 1 2.9822 -2.6159 -1.4019 31 1 1.3290 -2.6750 -0.7123 32 1 3.9172 -1.7145 0.6288 33 1 2.6829 -2.8416 1.2769 34 1 3.6702 -1.8750 4.4459 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = 21.287648 kcal Electronic energy + Delta-G solvation = -16860.817558 eV Core-core repulsion = 14371.598410 eV Total energy + Delta-G solvation = -2489.219148 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41358 -39.28818 -34.78623 -33.94062 -32.35797 -31.03525 -30.28083 -27.62287 -25.56841 -24.02959 -23.79101 -21.73768 -20.26766 -18.49769 -17.76773 -17.22722 -16.78181 -16.41081 -16.02944 -15.03354 -14.81581 -14.47888 -14.17406 -13.82292 -13.68202 -13.52098 -13.39533 -12.95704 -12.87040 -12.60067 -12.57235 -12.31803 -11.86460 -11.59079 -11.08905 -10.87159 -10.47678 -10.34965 -10.19694 -9.41784 -9.29696 -8.11815 -6.14803 0.51337 0.62920 1.34615 1.37133 1.43115 2.41583 3.13973 3.21648 3.38379 3.78691 4.06201 4.19522 4.23522 4.29679 4.40559 4.47498 4.58461 4.59782 4.72494 4.80210 4.96499 4.99331 5.14255 5.16996 5.26081 5.39834 5.47363 5.56904 5.67137 5.72627 5.87980 6.06273 6.20538 6.39462 6.69835 6.92452 7.30025 7.51433 8.97946 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.014673 C = 0.009739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.504901 B = 1907.806285 C = 2874.367430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 C -0.063 4.063 4 C -0.086 4.086 5 C -0.175 4.175 6 C 0.060 3.940 7 N -0.516 5.516 8 C 0.096 3.904 9 N -0.663 5.663 10 C 0.046 3.954 11 C -0.092 4.092 12 C 0.052 3.948 13 H 0.010 0.990 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.930 3.070 19 H -0.286 1.286 20 H -0.284 1.284 21 H -0.270 1.270 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.151 0.849 29 H 0.342 0.658 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 5.054 -7.349 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.066 4.066 4 C -0.112 4.112 5 C -0.195 4.195 6 C -0.097 4.097 7 N -0.225 5.225 8 C -0.060 4.060 9 N -0.292 5.292 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.033 3.967 13 H 0.029 0.971 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.181 4.181 17 N -0.559 5.559 18 Si 0.757 3.243 19 H -0.211 1.211 20 H -0.210 1.210 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.191 0.809 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.470 5.352 -7.681 10.374 hybrid contribution -0.747 -0.395 1.691 1.890 sum -5.217 4.958 -5.990 9.364 Atomic orbital electron populations 1.22352 0.94431 1.02092 1.02550 1.20543 0.92994 0.90290 0.91670 1.20450 0.95715 0.95168 0.95256 1.21601 1.00129 0.92914 0.96604 1.22304 0.98376 0.97764 1.01043 1.23071 0.93541 0.99063 0.93983 1.67643 1.31645 1.01855 1.21349 1.22569 0.93509 0.92596 0.97326 1.62890 1.47963 1.10969 1.07422 1.22994 0.99450 0.89597 0.96208 1.22240 0.98611 0.98357 0.93873 1.19460 0.94202 0.92322 0.90670 0.97146 1.21662 1.27477 0.99491 1.05909 0.91915 1.25540 0.97886 0.95898 0.98752 1.70051 1.45671 1.16759 1.23431 0.86037 0.79920 0.79788 0.78533 1.21109 1.20971 1.19537 0.92063 0.91130 0.92234 0.84716 0.82504 0.80924 0.83152 0.84141 0.89781 0.93518 0.95055 0.94253 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 7.73 71.98 0.56 -4.20 16 2 C 0.14 5.10 0.99 2.92 0.00 5.10 16 3 C -0.06 -2.43 2.78 -19.77 -0.06 -2.48 16 4 C -0.09 -3.02 8.15 22.46 0.18 -2.83 16 5 C -0.18 -5.41 10.11 22.36 0.23 -5.19 16 6 C 0.06 1.96 11.18 84.69 0.95 2.91 16 7 N -0.52 -19.94 10.36 -195.84 -2.03 -21.97 16 8 C 0.10 3.84 10.12 84.67 0.86 4.70 16 9 N -0.66 -22.14 5.69 -462.80 -2.63 -24.77 16 10 C 0.05 1.58 7.54 86.65 0.65 2.24 16 11 C -0.09 -4.18 5.81 31.80 0.18 -3.99 16 12 C 0.05 2.46 2.49 -10.66 -0.03 2.44 16 13 H 0.01 0.54 7.69 -2.39 -0.02 0.52 16 14 C -0.51 -26.83 7.55 25.60 0.19 -26.64 16 15 H 0.06 3.34 4.64 -2.91 -0.01 3.33 16 16 C 0.02 0.97 5.35 84.65 0.45 1.42 16 17 N -0.92 -52.88 12.70 21.45 0.27 -52.61 16 18 Si 0.93 44.81 29.54 68.60 2.03 46.83 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H 0.06 1.90 6.73 -2.39 -0.02 1.88 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.14 4.38 6.62 -2.91 -0.02 4.36 16 26 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.17 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.15 6.13 7.18 -2.91 -0.02 6.11 16 29 H 0.34 9.35 8.43 -89.69 -0.76 8.59 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.57 7.86 -2.39 -0.02 1.55 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -61.89 273.70 2.15 -59.74 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.34 Total: 19.31 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.17 Total: -26.53 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.39 Total: -99.35 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.89 2.15 -59.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.026 kcal (2) G-P(sol) polarization free energy of solvation -61.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds