Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 110.06528 * 2 1 4 4 C 1.38672 * 120.41628 * 88.79446 * 3 2 1 5 5 C 1.38629 * 118.42085 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.15773 * 359.97438 * 5 4 3 7 7 N 1.31849 * 120.76492 * 0.02562 * 6 5 4 8 8 C 1.31891 * 121.72640 * 359.69679 * 7 6 5 9 9 N 1.48321 * 109.87917 * 121.15607 * 2 1 3 10 10 C 1.48537 * 105.60420 * 94.08432 * 9 2 1 11 11 C 1.54936 * 103.37541 * 39.18306 * 10 9 2 12 12 C 1.53987 * 109.91948 * 238.79445 * 2 1 3 13 13 H 1.09001 * 110.31205 * 122.95726 * 12 2 1 14 14 C 1.50703 * 110.39339 * 0.83345 * 12 2 1 15 15 H 1.07998 * 119.99494 * 2.77966 * 14 12 2 16 16 C 1.37880 * 119.99803 * 182.78033 * 14 12 2 17 17 N 1.31510 * 119.99961 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99704 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46790 * 60.00100 * 18 16 14 20 20 H 1.48494 * 109.47104 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47257 * 300.00233 * 18 16 14 22 22 H 1.09000 * 109.47104 * 181.20335 * 1 2 3 23 23 H 1.08996 * 109.47381 * 301.20965 * 1 2 3 24 24 H 1.09005 * 109.46942 * 61.20291 * 1 2 3 25 25 H 1.08000 * 120.79122 * 0.02562 * 4 3 2 26 26 H 1.08003 * 120.42004 * 179.97438 * 5 4 3 27 27 H 1.07995 * 119.61280 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.61881 * 180.31264 * 8 7 6 29 29 H 1.00898 * 111.19789 * 333.58947 * 9 2 1 30 30 H 1.09002 * 110.66696 * 280.66311 * 10 9 2 31 31 H 1.09001 * 110.66368 * 157.70151 * 10 9 2 32 32 H 1.08998 * 110.72698 * 80.86591 * 11 10 9 33 33 H 1.09007 * 110.72188 * 203.96563 * 11 10 9 34 34 H 0.97005 * 119.99192 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4156 0.0000 4 6 2.2643 2.0837 1.1956 5 6 2.7401 3.3849 1.1473 6 6 2.9809 3.9688 -0.0823 7 7 2.7628 3.3031 -1.1993 8 6 2.3157 2.0623 -1.1912 9 7 2.0343 -0.7216 1.1936 10 6 2.2660 -2.1193 0.7472 11 6 2.8536 -1.9482 -0.6761 12 6 2.0546 -0.7501 -1.2383 13 1 2.7064 -0.1026 -1.8249 14 6 0.9056 -1.2376 -2.0828 15 1 -0.1098 -1.0003 -1.8018 16 6 1.1508 -1.9867 -3.2141 17 7 2.3873 -2.2761 -3.5559 18 14 -0.2735 -2.5917 -4.2605 19 1 -1.0486 -1.4283 -4.7615 20 1 0.2529 -3.3679 -5.4118 21 1 -1.1569 -3.4590 -3.4404 22 1 -0.3633 -1.0274 0.0216 23 1 -0.3634 0.5325 0.8789 24 1 -0.3633 0.4951 -0.9006 25 1 2.0675 1.6018 2.1419 26 1 2.9203 3.9354 2.0589 27 1 3.3512 4.9822 -0.1285 28 1 2.1538 1.5472 -2.1265 29 1 1.3661 -0.6893 1.9489 30 1 1.3275 -2.6725 0.7121 31 1 2.9810 -2.6184 1.4012 32 1 3.9172 -1.7145 -0.6288 33 1 2.6832 -2.8436 -1.2740 34 1 2.5597 -2.8029 -4.3520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = 25.621556 kcal Electronic energy + Delta-G solvation = -16629.072277 eV Core-core repulsion = 14140.041061 eV Total energy + Delta-G solvation = -2489.031215 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40520 -39.43992 -34.81550 -33.66010 -32.79639 -30.91234 -30.60532 -26.79037 -26.27492 -24.36882 -23.81357 -21.58026 -20.34754 -18.26390 -17.92190 -17.08108 -16.88541 -16.27952 -16.14102 -15.19037 -14.95036 -14.56294 -14.23586 -13.87589 -13.82263 -13.67549 -13.08944 -12.95401 -12.85457 -12.47509 -12.30078 -12.14216 -11.80892 -11.63662 -11.12873 -10.73455 -10.48918 -10.39307 -10.23074 -9.74546 -9.35509 -8.08022 -6.17434 0.34078 0.52875 1.41742 1.43226 1.49291 2.44127 3.00212 3.23025 3.38930 3.70005 4.02201 4.11244 4.23108 4.29191 4.42604 4.45315 4.55484 4.59069 4.73914 4.85164 4.93502 4.99628 5.07046 5.22734 5.33233 5.37091 5.44768 5.57444 5.67763 5.83494 5.87669 5.96451 6.03071 6.44031 6.66018 6.92386 7.17642 7.50554 8.99557 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.009121 C = 0.008046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.294005 B = 3069.252464 C = 3479.301239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.141 3.859 3 C -0.105 4.105 4 C -0.063 4.063 5 C -0.168 4.168 6 C 0.071 3.929 7 N -0.517 5.517 8 C 0.080 3.920 9 N -0.657 5.657 10 C 0.053 3.947 11 C -0.101 4.101 12 C 0.046 3.954 13 H 0.004 0.996 14 C -0.526 4.526 15 H 0.077 0.923 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.944 3.056 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.269 1.269 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.153 0.847 26 H 0.171 0.829 27 H 0.181 0.819 28 H 0.131 0.869 29 H 0.341 0.659 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.021 0.979 33 H 0.052 0.948 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 6.633 11.436 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 C -0.108 4.108 4 C -0.089 4.089 5 C -0.187 4.187 6 C -0.086 4.086 7 N -0.226 5.226 8 C -0.076 4.076 9 N -0.286 5.286 10 C -0.076 4.076 11 C -0.140 4.140 12 C 0.027 3.973 13 H 0.022 0.978 14 C -0.564 4.564 15 H 0.095 0.905 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.217 1.217 21 H -0.194 1.194 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.170 0.830 26 H 0.188 0.812 27 H 0.198 0.802 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.142 7.167 10.472 12.741 hybrid contribution -1.432 -1.450 -0.632 2.134 sum -2.574 5.718 9.841 11.669 Atomic orbital electron populations 1.22196 0.94586 1.01557 1.00953 1.20455 0.93282 0.89546 0.91779 1.20845 0.99109 0.96532 0.94323 1.21667 0.95006 0.94056 0.98179 1.22482 1.00269 0.95661 1.00298 1.23292 0.96653 1.00801 0.87880 1.67670 1.12982 1.08557 1.33363 1.22633 0.95893 0.90707 0.98377 1.63178 1.47421 1.10859 1.07186 1.22858 0.99131 0.89734 0.95858 1.22249 0.96334 1.00658 0.94716 1.19549 0.94384 0.92387 0.90958 0.97830 1.21869 0.94027 1.32287 1.08219 0.90470 1.25712 0.97253 0.96726 0.98837 1.70120 1.20293 1.39577 1.25815 0.85820 0.80158 0.78448 0.78486 1.19939 1.21703 1.19444 0.92414 0.92161 0.93044 0.82974 0.81178 0.80203 0.85109 0.84295 0.94415 0.89861 0.95988 0.92888 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 6.94 71.98 0.50 -4.29 16 2 C 0.14 5.43 0.98 2.84 0.00 5.44 16 3 C -0.11 -3.91 4.87 -19.77 -0.10 -4.00 16 4 C -0.06 -1.83 9.45 22.47 0.21 -1.62 16 5 C -0.17 -4.11 10.11 22.36 0.23 -3.88 16 6 C 0.07 2.01 11.18 84.69 0.95 2.96 16 7 N -0.52 -19.45 10.36 -195.85 -2.03 -21.48 16 8 C 0.08 3.29 9.92 84.67 0.84 4.13 16 9 N -0.66 -22.12 6.10 -461.88 -2.82 -24.93 16 10 C 0.05 1.96 7.52 86.65 0.65 2.61 16 11 C -0.10 -4.76 6.11 31.80 0.19 -4.57 16 12 C 0.05 2.24 2.08 -10.66 -0.02 2.22 16 13 H 0.00 0.21 5.69 -2.39 -0.01 0.19 16 14 C -0.53 -27.23 7.66 25.60 0.20 -27.03 16 15 H 0.08 3.81 4.72 -2.91 -0.01 3.80 16 16 C 0.01 0.72 5.08 84.66 0.43 1.15 16 17 N -0.92 -53.00 11.91 21.45 0.26 -52.74 16 18 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H 0.06 2.12 7.21 -2.39 -0.02 2.10 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 2.00 7.02 -2.38 -0.02 1.98 16 25 H 0.15 3.67 7.58 -2.91 -0.02 3.65 16 26 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 27 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.13 6.20 6.40 -2.91 -0.02 6.19 16 29 H 0.34 9.31 8.45 -89.70 -0.76 8.56 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 2.79 6.54 -2.38 -0.02 2.78 16 34 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -62.26 271.76 1.87 -60.39 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.35 Total: 20.66 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.08 Total: -26.88 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -4.59 Total: -99.16 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.26 1.87 -60.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.015 kcal (2) G-P(sol) polarization free energy of solvation -62.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds