Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38228 * 119.61876 * 2 1 4 4 C 1.38630 * 119.16305 * 180.02562 * 3 2 1 5 5 C 1.38670 * 118.41770 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.41437 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.36857 * 325.40467 * 6 5 4 8 8 N 1.48560 * 110.40853 * 202.92321 * 6 5 4 9 9 C 1.48564 * 104.21919 * 201.73913 * 8 6 5 10 10 C 1.54383 * 104.59404 * 39.48506 * 9 8 6 11 11 C 1.54253 * 105.05876 * 336.14627 * 10 9 8 12 12 H 1.09008 * 110.32359 * 241.10351 * 11 10 9 13 13 C 1.50706 * 110.41052 * 118.94086 * 11 10 9 14 14 H 1.08001 * 120.00097 * 247.80221 * 13 11 10 15 15 C 1.37879 * 119.99560 * 67.80358 * 13 11 10 16 16 N 1.31513 * 120.00333 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99635 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47381 * 89.99874 * 17 15 13 19 19 H 1.48503 * 109.47124 * 209.99869 * 17 15 13 20 20 H 1.48499 * 109.47084 * 329.99662 * 17 15 13 21 21 C 1.38179 * 119.16805 * 0.27725 * 5 4 3 22 22 N 1.31859 * 119.62300 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47273 * 90.00754 * 1 2 3 24 24 H 1.09005 * 109.46888 * 210.00049 * 1 2 3 25 25 H 1.09001 * 109.47536 * 330.00596 * 1 2 3 26 26 H 1.07999 * 120.41894 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.79012 * 180.02562 * 4 3 2 28 28 H 1.00896 * 111.00036 * 82.18390 * 8 6 5 29 29 H 1.09005 * 110.41123 * 158.26229 * 9 8 6 30 30 H 1.09001 * 110.41153 * 280.58580 * 9 8 6 31 31 H 1.08996 * 110.32221 * 217.24559 * 10 9 8 32 32 H 1.09003 * 110.32092 * 95.04664 * 10 9 8 33 33 H 0.97001 * 119.99822 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.61962 * 179.71081 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0005 6 6 5.7322 -0.0987 -0.0005 7 1 6.1473 0.7255 -0.5807 8 7 6.1949 -1.4021 -0.5428 9 6 7.5707 -1.5542 -0.0031 10 6 7.4820 -1.0225 1.4436 11 6 6.2726 -0.0650 1.4452 12 1 6.5892 0.9445 1.7076 13 6 5.2199 -0.5495 2.4088 14 1 4.2720 -0.9093 2.0369 15 6 5.4672 -0.5333 3.7652 16 7 6.6217 -0.0956 4.2180 17 14 4.1628 -1.1345 4.9595 18 1 4.3410 -2.5897 5.1959 19 1 4.2950 -0.4042 6.2458 20 1 2.8153 -0.8875 4.3863 21 6 3.4766 -1.1947 -0.0058 22 7 2.1587 -1.1462 -0.0005 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6507 2.1373 -0.0004 27 1 4.1365 2.1139 -0.0001 28 1 6.2014 -1.3921 -1.5517 29 1 7.8659 -2.6035 -0.0050 30 1 8.2754 -0.9607 -0.5856 31 1 8.3923 -0.4831 1.7052 32 1 7.3150 -1.8447 2.1395 33 1 6.7958 -0.0846 5.1722 34 1 3.9755 -2.1526 -0.0106 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = 32.954590 kcal Electronic energy + Delta-G solvation = -16430.606772 eV Core-core repulsion = 13941.893540 eV Total energy + Delta-G solvation = -2488.713231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79465 -37.52245 -32.69913 -32.66296 -31.62524 -29.13965 -28.80481 -25.82271 -24.46785 -22.83985 -21.48939 -20.11909 -19.14132 -16.62308 -16.14675 -15.54450 -15.15807 -14.59998 -14.38446 -13.87487 -13.54197 -12.85960 -12.51700 -12.44618 -12.09909 -11.91106 -11.81315 -11.59544 -11.09738 -10.94370 -10.78752 -10.56952 -10.33136 -9.86180 -9.52851 -9.00093 -8.95157 -8.64989 -8.39212 -7.95633 -7.78347 -5.99385 -3.98998 1.84727 2.01260 3.34385 3.40620 3.47505 4.46559 4.48791 4.84071 4.94376 5.28513 5.34764 5.57632 5.65832 5.74261 5.83328 5.84698 5.91354 5.97475 6.04881 6.10560 6.22907 6.37151 6.52816 6.59868 6.75690 6.90214 7.04457 7.08432 7.32162 7.45196 7.59149 7.84074 7.98221 7.99909 8.45160 8.71945 9.02935 9.64818 11.10842 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.012074 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.092350 B = 2318.388529 C = 3318.408464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.096 3.904 3 C -0.176 4.176 4 C -0.079 4.079 5 C -0.070 4.070 6 C 0.105 3.895 7 H 0.037 0.963 8 N -0.655 5.655 9 C 0.036 3.964 10 C -0.098 4.098 11 C 0.059 3.941 12 H 0.035 0.965 13 C -0.499 4.499 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.884 3.116 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.131 3.869 22 N -0.494 5.494 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.319 0.681 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.258 0.742 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 1.691 -9.113 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.196 4.196 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.005 4.005 7 H 0.055 0.945 8 N -0.282 5.282 9 C -0.093 4.093 10 C -0.136 4.136 11 C 0.040 3.960 12 H 0.053 0.947 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.712 3.288 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.026 4.026 22 N -0.204 5.204 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.944 0.489 -8.455 9.807 hybrid contribution 0.524 1.217 0.406 1.386 sum -4.420 1.706 -8.050 9.340 Atomic orbital electron populations 1.20585 0.89993 1.02723 1.02009 1.21047 0.96362 0.88889 0.97815 1.21673 0.94771 0.98548 1.04636 1.21251 0.94038 0.97888 0.97309 1.20458 0.96417 0.93587 0.96788 1.21566 0.90071 0.89409 0.99464 0.94498 1.63496 1.21173 1.32338 1.11213 1.22965 0.88658 0.99886 0.97831 1.22322 0.98548 1.00274 0.92496 1.19410 0.93015 0.95822 0.87771 0.94666 1.21302 1.00610 1.41424 0.90332 0.91542 1.24932 0.95235 0.95414 0.98379 1.69968 1.22447 1.47138 1.13708 0.86703 0.82545 0.78933 0.80619 1.20652 1.21433 1.19946 1.22616 0.87887 0.99130 0.92985 1.67509 1.10488 1.29080 1.13336 0.91374 0.91080 0.91485 0.86015 0.85824 0.86754 0.91508 0.95852 0.93822 0.91161 0.93210 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.17 36.00 0.37 -0.93 16 2 C 0.10 1.71 6.78 -82.59 -0.56 1.15 16 3 C -0.18 -2.99 9.74 -39.44 -0.38 -3.38 16 4 C -0.08 -1.44 9.89 -39.28 -0.39 -1.83 16 5 C -0.07 -1.40 3.65 -104.48 -0.38 -1.78 16 6 C 0.11 2.09 3.32 -67.22 -0.22 1.86 16 7 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 8 N -0.66 -11.84 6.05 -103.94 -0.63 -12.47 16 9 C 0.04 0.64 7.47 -2.18 -0.02 0.63 16 10 C -0.10 -2.19 6.04 -25.35 -0.15 -2.34 16 11 C 0.06 1.40 2.79 -90.39 -0.25 1.15 16 12 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 13 C -0.50 -13.35 7.65 -34.44 -0.26 -13.61 16 14 H 0.07 1.82 4.69 -52.49 -0.25 1.57 16 15 C 0.06 1.71 5.25 -17.82 -0.09 1.61 16 16 N -0.89 -25.56 12.82 55.43 0.71 -24.85 16 17 Si 0.88 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 21 C 0.13 2.70 8.67 -17.55 -0.15 2.55 16 22 N -0.49 -10.01 10.27 -9.48 -0.10 -10.11 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.32 4.87 8.92 -39.29 -0.35 4.52 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.76 7.60 -51.93 -0.39 1.37 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.16 3.38 7.25 -52.49 -0.38 3.00 16 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -29.53 279.38 -8.06 -37.59 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.73 Total: 3.45 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.50 Total: -14.92 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.02 Total: -47.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.53 -8.06 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.542 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds