Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38228 * 119.61876 * 2 1 4 4 C 1.38630 * 119.16305 * 180.02562 * 3 2 1 5 5 C 1.38670 * 118.41770 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.41437 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.36857 * 325.40467 * 6 5 4 8 8 N 1.48560 * 110.40853 * 202.92321 * 6 5 4 9 9 C 1.48564 * 104.21919 * 201.73913 * 8 6 5 10 10 C 1.54383 * 104.59404 * 39.48506 * 9 8 6 11 11 C 1.54253 * 105.05876 * 336.14627 * 10 9 8 12 12 H 1.09008 * 110.32359 * 241.10351 * 11 10 9 13 13 C 1.50706 * 110.41052 * 118.94086 * 11 10 9 14 14 H 1.08001 * 120.00097 * 247.80221 * 13 11 10 15 15 C 1.37879 * 119.99560 * 67.80358 * 13 11 10 16 16 N 1.31513 * 120.00333 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99635 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47381 * 89.99874 * 17 15 13 19 19 H 1.48503 * 109.47124 * 209.99869 * 17 15 13 20 20 H 1.48499 * 109.47084 * 329.99662 * 17 15 13 21 21 C 1.38179 * 119.16805 * 0.27725 * 5 4 3 22 22 N 1.31859 * 119.62300 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47273 * 90.00754 * 1 2 3 24 24 H 1.09005 * 109.46888 * 210.00049 * 1 2 3 25 25 H 1.09001 * 109.47536 * 330.00596 * 1 2 3 26 26 H 1.07999 * 120.41894 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.79012 * 180.02562 * 4 3 2 28 28 H 1.00896 * 111.00036 * 82.18390 * 8 6 5 29 29 H 1.09005 * 110.41123 * 158.26229 * 9 8 6 30 30 H 1.09001 * 110.41153 * 280.58580 * 9 8 6 31 31 H 1.08996 * 110.32221 * 217.24559 * 10 9 8 32 32 H 1.09003 * 110.32092 * 95.04664 * 10 9 8 33 33 H 0.97001 * 119.99822 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.61962 * 179.71081 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0005 6 6 5.7322 -0.0987 -0.0005 7 1 6.1473 0.7255 -0.5807 8 7 6.1949 -1.4021 -0.5428 9 6 7.5707 -1.5542 -0.0031 10 6 7.4820 -1.0225 1.4436 11 6 6.2726 -0.0650 1.4452 12 1 6.5892 0.9445 1.7076 13 6 5.2199 -0.5495 2.4088 14 1 4.2720 -0.9093 2.0369 15 6 5.4672 -0.5333 3.7652 16 7 6.6217 -0.0956 4.2180 17 14 4.1628 -1.1345 4.9595 18 1 4.3410 -2.5897 5.1959 19 1 4.2950 -0.4042 6.2458 20 1 2.8153 -0.8875 4.3863 21 6 3.4766 -1.1947 -0.0058 22 7 2.1587 -1.1462 -0.0005 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6507 2.1373 -0.0004 27 1 4.1365 2.1139 -0.0001 28 1 6.2014 -1.3921 -1.5517 29 1 7.8659 -2.6035 -0.0050 30 1 8.2754 -0.9607 -0.5856 31 1 8.3923 -0.4831 1.7052 32 1 7.3150 -1.8447 2.1395 33 1 6.7958 -0.0846 5.1722 34 1 3.9755 -2.1526 -0.0106 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = 13.778079 kcal Electronic energy + Delta-G solvation = -16431.438328 eV Core-core repulsion = 13941.893540 eV Total energy + Delta-G solvation = -2489.544787 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25183 -39.10663 -34.69279 -34.08833 -33.01993 -30.95766 -30.21134 -27.33142 -26.33236 -24.32452 -22.91540 -21.70517 -20.89804 -18.46311 -17.69499 -17.12519 -16.59066 -16.51412 -16.01658 -15.23165 -14.97755 -14.47309 -14.14951 -13.86519 -13.62495 -13.44998 -13.30816 -12.95359 -12.88221 -12.62126 -12.60766 -12.34645 -12.01753 -11.69681 -11.37517 -10.80601 -10.50832 -10.44871 -10.21104 -9.39554 -9.25697 -8.11750 -6.13862 0.42981 0.57458 1.33138 1.35946 1.44750 2.41737 3.02485 3.22093 3.39660 3.63140 4.02380 4.13301 4.25005 4.29254 4.36022 4.50921 4.56239 4.62331 4.81665 4.84774 4.86559 4.91739 5.01869 5.15490 5.26280 5.33886 5.40123 5.50378 5.62484 5.73925 5.85207 6.03368 6.10641 6.44185 6.66738 6.94088 7.28168 7.51354 8.98439 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.012074 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.092350 B = 2318.388529 C = 3318.408464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.084 3.916 3 C -0.173 4.173 4 C -0.088 4.088 5 C -0.089 4.089 6 C 0.116 3.884 7 H 0.055 0.945 8 N -0.659 5.659 9 C 0.047 3.953 10 C -0.094 4.094 11 C 0.051 3.949 12 H 0.006 0.994 13 C -0.496 4.496 14 H 0.060 0.940 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.933 3.067 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.115 3.885 22 N -0.519 5.519 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.340 0.660 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.257 0.743 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 2.314 -10.389 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.193 4.193 4 C -0.114 4.114 5 C -0.092 4.092 6 C 0.005 3.995 7 H 0.073 0.927 8 N -0.288 5.288 9 C -0.082 4.082 10 C -0.133 4.133 11 C 0.032 3.968 12 H 0.024 0.976 13 C -0.534 4.534 14 H 0.078 0.922 15 C -0.183 4.183 16 N -0.562 5.562 17 Si 0.760 3.240 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.042 4.042 22 N -0.229 5.229 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.177 0.823 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.125 1.102 -9.749 11.566 hybrid contribution 0.827 1.058 0.765 1.546 sum -5.298 2.161 -8.984 10.651 Atomic orbital electron populations 1.20695 0.86979 1.03624 1.03733 1.21814 0.98478 0.88563 0.96432 1.22096 0.94382 0.99877 1.02914 1.21601 0.95108 0.97971 0.96739 1.20508 0.96325 0.94167 0.98163 1.21340 0.90336 0.90804 0.96978 0.92732 1.63412 1.21118 1.31483 1.12820 1.22860 0.89350 1.01006 0.94951 1.22122 0.97546 0.98726 0.94908 1.19342 0.93122 0.94262 0.90104 0.97582 1.21577 1.00900 1.40064 0.90870 0.92192 1.25535 0.96682 0.96197 0.99932 1.70059 1.23704 1.48705 1.13703 0.85939 0.80302 0.78494 0.79232 1.20551 1.20884 1.20547 1.22492 0.88416 0.98981 0.94264 1.67516 1.10405 1.30672 1.14294 0.89131 0.91690 0.89070 0.82321 0.84183 0.84437 0.90069 0.93116 0.94558 0.94641 0.93421 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.17 71.23 0.72 -1.52 16 2 C 0.08 2.83 6.78 42.55 0.29 3.12 16 3 C -0.17 -5.39 9.74 22.36 0.22 -5.17 16 4 C -0.09 -3.07 9.89 22.47 0.22 -2.85 16 5 C -0.09 -3.48 3.65 -19.77 -0.07 -3.55 16 6 C 0.12 4.49 3.32 44.32 0.15 4.63 16 7 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 8 N -0.66 -22.83 6.05 -482.76 -2.92 -25.75 16 9 C 0.05 1.62 7.47 86.45 0.65 2.27 16 10 C -0.09 -4.26 6.04 31.49 0.19 -4.07 16 11 C 0.05 2.45 2.79 -10.65 -0.03 2.42 16 12 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 13 C -0.50 -26.89 7.65 25.60 0.20 -26.70 16 14 H 0.06 3.31 4.69 -2.91 -0.01 3.30 16 15 C 0.01 0.81 5.25 84.66 0.44 1.25 16 16 N -0.92 -53.80 12.82 21.45 0.28 -53.53 16 17 Si 0.93 45.94 29.54 68.60 2.03 47.97 16 18 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 21 C 0.12 4.70 8.67 84.67 0.73 5.44 16 22 N -0.52 -20.56 10.27 -183.90 -1.89 -22.45 16 23 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 26 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 27 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 28 H 0.34 9.56 8.92 -89.70 -0.80 8.76 16 29 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.81 7.60 -2.39 -0.02 1.79 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.15 6.32 7.25 -2.91 -0.02 6.30 16 Total: -1.00 -64.24 279.38 1.50 -62.75 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.29 Total: 15.74 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 3.71 Total: -24.73 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -4.53 Total: -101.72 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -64.24 1.50 -62.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.526 kcal (2) G-P(sol) polarization free energy of solvation -64.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds