Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 119.61897 * 2 1 4 4 C 1.38638 * 119.15674 * 179.74815 * 3 2 1 5 5 C 1.38669 * 118.42255 * 0.51842 * 4 3 2 6 6 C 1.50695 * 120.41949 * 179.77952 * 5 4 3 7 7 H 1.09002 * 109.90713 * 20.07329 * 6 5 4 8 8 N 1.47902 * 109.91611 * 141.17392 * 6 5 4 9 9 C 1.48536 * 105.81944 * 144.88067 * 8 6 5 10 10 C 1.54943 * 103.22796 * 320.79749 * 9 8 6 11 11 C 1.53991 * 110.08307 * 258.86321 * 6 5 4 12 12 H 1.09002 * 110.31159 * 358.34941 * 11 6 5 13 13 C 1.50703 * 110.30606 * 120.41175 * 11 6 5 14 14 H 1.07989 * 120.00232 * 0.02562 * 13 11 6 15 15 C 1.37880 * 119.99739 * 179.97438 * 13 11 6 16 16 N 1.31516 * 120.00179 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00034 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46933 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47133 * 119.99952 * 17 15 13 20 20 H 1.48504 * 109.47449 * 240.00110 * 17 15 13 21 21 C 1.38180 * 119.16108 * 359.50871 * 5 4 3 22 22 N 1.31860 * 119.61692 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46727 * 269.97661 * 1 2 3 24 24 H 1.08999 * 109.46843 * 29.97291 * 1 2 3 25 25 H 1.08997 * 109.47421 * 149.97152 * 1 2 3 26 26 H 1.07992 * 120.42418 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.78499 * 180.27685 * 4 3 2 28 28 H 1.00901 * 111.00008 * 265.39281 * 8 6 5 29 29 H 1.09005 * 110.66475 * 79.22817 * 9 8 6 30 30 H 1.08993 * 110.66962 * 202.35886 * 9 8 6 31 31 H 1.09003 * 110.71724 * 279.05119 * 10 9 8 32 32 H 1.09002 * 110.72294 * 155.77189 * 10 9 8 33 33 H 0.97003 * 119.99859 * 179.97438 * 16 15 13 34 34 H 1.08004 * 119.61841 * 180.25796 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5765 1.1905 0.0053 5 6 4.2267 -0.0343 -0.0006 6 6 5.7323 -0.0989 -0.0001 7 1 6.1442 0.8451 0.3566 8 7 6.1887 -1.2073 0.8663 9 6 7.4034 -1.7584 0.2126 10 6 7.0470 -1.7117 -1.2945 11 6 6.2493 -0.3935 -1.4204 12 1 5.4135 -0.5196 -2.1088 13 6 7.1495 0.7198 -1.8907 14 1 7.3444 1.5650 -1.2473 15 6 7.7253 0.6589 -3.1420 16 7 7.4884 -0.3706 -3.9254 17 14 8.8417 2.0385 -3.7247 18 1 8.9461 3.0723 -2.6637 19 1 10.1914 1.4928 -4.0179 20 1 8.2758 2.6470 -4.9555 21 6 3.4766 -1.1948 -0.0011 22 7 2.1587 -1.1463 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6509 2.1373 0.0004 27 1 4.1367 2.1138 0.0099 28 1 6.3972 -0.8767 1.7966 29 1 8.2707 -1.1323 0.4224 30 1 7.5814 -2.7844 0.5343 31 1 6.4280 -2.5652 -1.5710 32 1 7.9504 -1.6756 -1.9035 33 1 7.8932 -0.4133 -4.8059 34 1 3.9754 -2.1528 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = 7.116370 kcal Electronic energy + Delta-G solvation = -16083.756131 eV Core-core repulsion = 13593.922470 eV Total energy + Delta-G solvation = -2489.833661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26404 -39.18645 -34.84061 -34.03836 -33.10176 -30.96147 -30.19008 -27.77903 -26.01144 -24.49917 -22.88519 -21.88298 -20.89376 -18.60053 -17.49444 -17.41759 -16.69203 -16.38493 -16.11361 -15.26659 -15.16810 -14.39731 -14.29974 -13.96691 -13.53655 -13.30866 -13.25100 -12.98159 -12.92762 -12.58523 -12.47792 -12.44355 -12.06472 -11.85498 -11.50015 -10.90883 -10.57608 -10.49980 -10.35540 -9.50241 -9.40442 -8.15737 -6.28164 0.29979 0.44690 1.37995 1.40387 1.50777 2.39430 2.91501 3.14626 3.39990 3.54530 3.94412 4.08693 4.16808 4.25337 4.32201 4.49590 4.54424 4.62595 4.75091 4.81557 4.86047 4.91246 4.97835 5.18726 5.24847 5.31759 5.35638 5.50985 5.55885 5.73878 5.80947 5.91659 5.94676 6.34683 6.58789 6.82590 7.16289 7.40162 8.92341 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.007618 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.371224 B = 3674.751864 C = 4181.057801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.095 3.905 3 C -0.170 4.170 4 C -0.084 4.084 5 C -0.122 4.122 6 C 0.123 3.877 7 H 0.050 0.950 8 N -0.664 5.664 9 C 0.053 3.947 10 C -0.099 4.099 11 C 0.053 3.947 12 H -0.008 1.008 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.113 3.887 22 N -0.513 5.513 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.165 0.835 27 H 0.141 0.859 28 H 0.341 0.659 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.261 0.739 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 2.766 8.953 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 C -0.189 4.189 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.013 3.987 7 H 0.068 0.932 8 N -0.293 5.293 9 C -0.076 4.076 10 C -0.138 4.138 11 C 0.034 3.966 12 H 0.010 0.990 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.779 3.221 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.044 4.044 22 N -0.224 5.224 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.182 0.818 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.517 1.404 8.562 12.158 hybrid contribution 2.064 1.887 -0.667 2.875 sum -6.453 3.291 7.895 10.715 Atomic orbital electron populations 1.20735 0.86447 1.04057 1.03912 1.21929 0.98705 0.88330 0.95365 1.22192 0.94066 1.00232 1.02457 1.21744 0.95330 0.97924 0.96040 1.20921 0.96752 0.94535 1.00232 1.21075 0.89632 0.93119 0.94890 0.93228 1.62885 1.30762 1.30730 1.04927 1.22909 0.91024 0.99634 0.93987 1.22268 0.99739 0.97040 0.94739 1.19370 0.93593 0.93767 0.89862 0.98982 1.21534 1.28712 1.05583 1.00730 0.92593 1.25742 0.97987 0.97908 0.96863 1.70118 1.44931 1.31034 1.09559 0.85575 0.78635 0.79629 0.78263 1.18824 1.20571 1.20899 1.22460 0.88664 0.98636 0.94597 1.67556 1.09992 1.30732 1.14086 0.89181 0.88643 0.91218 0.81780 0.84124 0.84322 0.94355 0.89308 0.95049 0.93087 0.92999 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 10.17 71.24 0.72 -1.22 16 2 C 0.09 2.86 6.78 42.55 0.29 3.15 16 3 C -0.17 -4.84 9.75 22.36 0.22 -4.62 16 4 C -0.08 -2.83 9.83 22.47 0.22 -2.61 16 5 C -0.12 -4.70 4.77 -19.78 -0.09 -4.80 16 6 C 0.12 5.03 3.15 44.31 0.14 5.17 16 7 H 0.05 2.03 7.29 -2.39 -0.02 2.01 16 8 N -0.66 -23.65 6.38 -484.02 -3.09 -26.74 16 9 C 0.05 1.98 7.55 86.65 0.65 2.64 16 10 C -0.10 -4.68 6.16 31.80 0.20 -4.48 16 11 C 0.05 2.66 2.50 -10.66 -0.03 2.63 16 12 H -0.01 -0.47 7.69 -2.39 -0.02 -0.49 16 13 C -0.53 -28.31 8.49 25.60 0.22 -28.09 16 14 H 0.06 2.92 7.34 -2.92 -0.02 2.90 16 15 C 0.01 0.77 5.09 84.65 0.43 1.21 16 16 N -0.92 -53.23 12.15 21.45 0.26 -52.97 16 17 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 C 0.11 4.40 10.50 84.67 0.89 5.29 16 22 N -0.51 -18.85 10.27 -183.88 -1.89 -20.74 16 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.34 10.27 8.92 -89.69 -0.80 9.47 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 2.68 6.77 -2.39 -0.02 2.66 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.15 5.89 7.70 -2.91 -0.02 5.87 16 Total: -1.00 -63.19 283.33 1.46 -61.73 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.29 Total: 19.57 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.86 Total: -25.72 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.72 Total: -100.45 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.19 1.46 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.846 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds