Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38220 * 119.62201 * 2 1 4 4 C 1.38626 * 119.16648 * 179.97438 * 3 2 1 5 5 C 1.38677 * 118.41510 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.41700 * 180.02562 * 5 4 3 7 7 H 1.09005 * 110.36410 * 26.85671 * 6 5 4 8 8 N 1.48564 * 110.41147 * 149.32762 * 6 5 4 9 9 C 1.48555 * 104.22139 * 158.26215 * 8 6 5 10 10 C 1.54376 * 104.59399 * 320.52097 * 9 8 6 11 11 C 1.54255 * 105.06398 * 23.85007 * 10 9 8 12 12 H 1.09000 * 110.32634 * 118.89468 * 11 10 9 13 13 C 1.50702 * 110.41398 * 241.06118 * 11 10 9 14 14 H 1.08000 * 119.99718 * 50.43905 * 13 11 10 15 15 C 1.37877 * 119.99949 * 230.44726 * 13 11 10 16 16 N 1.31517 * 119.99751 * 179.97438 * 15 13 11 17 17 Si 1.86799 * 120.00279 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.46977 * 90.00081 * 17 15 13 19 19 H 1.48503 * 109.46985 * 210.00039 * 17 15 13 20 20 H 1.48498 * 109.47140 * 330.00083 * 17 15 13 21 21 C 1.38177 * 119.16512 * 359.97438 * 5 4 3 22 22 N 1.31855 * 119.61775 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47145 * 89.99584 * 1 2 3 24 24 H 1.09001 * 109.47481 * 210.00172 * 1 2 3 25 25 H 1.09003 * 109.46929 * 330.00582 * 1 2 3 26 26 H 1.08001 * 120.41947 * 0.27211 * 3 2 1 27 27 H 1.07997 * 120.79873 * 179.97438 * 4 3 2 28 28 H 1.00897 * 110.99639 * 277.82409 * 8 6 5 29 29 H 1.08996 * 110.41254 * 201.73973 * 9 8 6 30 30 H 1.09002 * 110.41158 * 79.29704 * 9 8 6 31 31 H 1.09007 * 110.32044 * 264.95211 * 10 9 8 32 32 H 1.09000 * 110.32562 * 142.75376 * 10 9 8 33 33 H 0.96995 * 119.99955 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.61873 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0344 0.0016 6 6 5.7322 -0.0990 0.0028 7 1 6.1499 0.7958 0.4644 8 7 6.1980 -1.3173 0.7140 9 6 7.5710 -1.5416 0.1930 10 6 7.4750 -1.2102 -1.3117 11 6 6.2653 -0.2612 -1.4368 12 1 6.5804 0.7034 -1.8347 13 6 5.2081 -0.8710 -2.3209 14 1 4.8693 -1.8803 -2.1399 15 6 4.6735 -0.1402 -3.3608 16 7 3.7512 -0.6726 -4.1326 17 14 5.2593 1.6058 -3.6734 18 1 6.4108 1.5812 -4.6108 19 1 4.1539 2.3997 -4.2678 20 1 5.6787 2.2244 -2.3902 21 6 3.4765 -1.1949 0.0026 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6508 2.1373 0.0044 27 1 4.1367 2.1138 0.0001 28 1 6.2094 -1.1711 1.7123 29 1 7.8665 -2.5811 0.3352 30 1 8.2781 -0.8738 0.6849 31 1 7.3047 -2.1189 -1.8894 32 1 8.3839 -0.7116 -1.6483 33 1 3.3749 -0.1584 -4.8639 34 1 3.9753 -2.1528 0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436881.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 34.559656 kcal Electronic energy + Delta-G solvation = -16637.477080 eV Core-core repulsion = 14148.833450 eV Total energy + Delta-G solvation = -2488.643630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60104 -37.62033 -32.73640 -32.40945 -31.42653 -29.82628 -28.78841 -25.91317 -24.26878 -22.72099 -21.36771 -20.28674 -18.90269 -17.21601 -16.14354 -15.63398 -15.06211 -14.71763 -13.99012 -13.72133 -13.49618 -12.81241 -12.63909 -12.38874 -12.20007 -12.04129 -11.88485 -11.68614 -11.28704 -11.09881 -10.89745 -10.68424 -10.31006 -9.69907 -9.59445 -8.98754 -8.87377 -8.65392 -8.49885 -8.00513 -7.70530 -6.04191 -4.00543 2.06533 2.19332 3.24218 3.30506 3.34060 4.40486 4.64272 4.81658 5.12922 5.21233 5.41849 5.61493 5.63023 5.72149 5.80853 5.82320 5.99829 6.05465 6.10490 6.15360 6.20569 6.31509 6.51376 6.55666 6.68472 6.71137 6.91233 6.97193 7.12639 7.17877 7.46772 7.68093 7.76797 7.90336 8.57778 8.95439 9.04090 9.58050 11.08594 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.013463 C = 0.009717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.031179 B = 2079.223838 C = 2880.865777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.104 3.896 3 C -0.181 4.181 4 C -0.089 4.089 5 C -0.066 4.066 6 C 0.104 3.896 7 H 0.032 0.968 8 N -0.654 5.654 9 C 0.040 3.960 10 C -0.119 4.119 11 C 0.015 3.985 12 H 0.042 0.958 13 C -0.490 4.490 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.866 3.134 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.161 3.839 22 N -0.492 5.492 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.322 0.678 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.261 0.739 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 3.631 9.246 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.116 4.116 5 C -0.068 4.068 6 C -0.006 4.006 7 H 0.050 0.950 8 N -0.281 5.281 9 C -0.090 4.090 10 C -0.158 4.158 11 C -0.005 4.005 12 H 0.060 0.940 13 C -0.527 4.527 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.694 3.306 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.191 1.191 21 C 0.003 3.997 22 N -0.201 5.201 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.447 2.368 8.661 8.990 hybrid contribution 1.364 2.684 -0.072 3.011 sum 1.811 5.052 8.589 10.128 Atomic orbital electron populations 1.20581 0.90193 1.02099 1.02408 1.20972 0.96220 0.88854 0.97238 1.21578 0.94663 0.98468 1.05426 1.21188 0.94222 0.97572 0.98575 1.20228 0.95681 0.93539 0.97372 1.21725 0.90802 0.89901 0.98191 0.94976 1.63507 1.20511 1.36245 1.07836 1.22843 0.89372 0.99896 0.96857 1.22561 0.98125 1.01340 0.93751 1.20032 0.93818 0.95461 0.91158 0.94014 1.20836 1.19119 1.01797 1.10995 0.90191 1.25041 0.94606 0.97121 0.95898 1.69890 1.27503 1.37155 1.18393 0.87027 0.78529 0.86546 0.78485 1.20416 1.21585 1.19149 1.22396 0.87711 0.98601 0.90953 1.67476 1.10572 1.28866 1.13203 0.91103 0.91229 0.91817 0.86418 0.86611 0.86424 0.91117 0.95591 0.90693 0.93543 0.92851 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.17 36.00 0.37 -1.11 16 2 C 0.10 2.07 6.78 -82.59 -0.56 1.51 16 3 C -0.18 -3.43 9.74 -39.44 -0.38 -3.82 16 4 C -0.09 -1.78 9.86 -39.28 -0.39 -2.17 16 5 C -0.07 -1.39 4.04 -104.48 -0.42 -1.81 16 6 C 0.10 2.07 3.32 -67.22 -0.22 1.85 16 7 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 8 N -0.65 -11.40 6.28 -103.95 -0.65 -12.06 16 9 C 0.04 0.64 7.47 -2.19 -0.02 0.63 16 10 C -0.12 -2.30 6.64 -25.35 -0.17 -2.47 16 11 C 0.01 0.33 2.84 -90.39 -0.26 0.08 16 12 H 0.04 0.96 4.65 -51.93 -0.24 0.72 16 13 C -0.49 -13.05 6.30 -34.44 -0.22 -13.27 16 14 H 0.08 2.39 7.50 -52.49 -0.39 1.99 16 15 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 17 Si 0.87 21.29 27.24 -169.99 -4.63 16.66 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 20 H -0.27 -6.17 6.40 56.52 0.36 -5.81 16 21 C 0.16 3.59 8.92 -17.55 -0.16 3.43 16 22 N -0.49 -10.95 10.27 -9.48 -0.10 -11.04 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.32 4.78 8.92 -39.29 -0.35 4.43 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.55 7.71 -51.93 -0.40 1.15 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.16 3.53 7.38 -52.49 -0.39 3.15 16 LS Contribution 277.38 15.07 4.18 4.18 Total: -1.00 -30.45 277.38 -7.70 -38.14 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.75 Total: 5.56 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.52 Total: -15.14 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.02 Total: -49.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.63 Total: 16.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.45 -7.70 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436881.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.702 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds