Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38220 * 119.62201 * 2 1 4 4 C 1.38626 * 119.16648 * 179.97438 * 3 2 1 5 5 C 1.38677 * 118.41510 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.41700 * 180.02562 * 5 4 3 7 7 H 1.09005 * 110.36410 * 26.85671 * 6 5 4 8 8 N 1.48564 * 110.41147 * 149.32762 * 6 5 4 9 9 C 1.48555 * 104.22139 * 158.26215 * 8 6 5 10 10 C 1.54376 * 104.59399 * 320.52097 * 9 8 6 11 11 C 1.54255 * 105.06398 * 23.85007 * 10 9 8 12 12 H 1.09000 * 110.32634 * 118.89468 * 11 10 9 13 13 C 1.50702 * 110.41398 * 241.06118 * 11 10 9 14 14 H 1.08000 * 119.99718 * 50.43905 * 13 11 10 15 15 C 1.37877 * 119.99949 * 230.44726 * 13 11 10 16 16 N 1.31517 * 119.99751 * 179.97438 * 15 13 11 17 17 Si 1.86799 * 120.00279 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.46977 * 90.00081 * 17 15 13 19 19 H 1.48503 * 109.46985 * 210.00039 * 17 15 13 20 20 H 1.48498 * 109.47140 * 330.00083 * 17 15 13 21 21 C 1.38177 * 119.16512 * 359.97438 * 5 4 3 22 22 N 1.31855 * 119.61775 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47145 * 89.99584 * 1 2 3 24 24 H 1.09001 * 109.47481 * 210.00172 * 1 2 3 25 25 H 1.09003 * 109.46929 * 330.00582 * 1 2 3 26 26 H 1.08001 * 120.41947 * 0.27211 * 3 2 1 27 27 H 1.07997 * 120.79873 * 179.97438 * 4 3 2 28 28 H 1.00897 * 110.99639 * 277.82409 * 8 6 5 29 29 H 1.08996 * 110.41254 * 201.73973 * 9 8 6 30 30 H 1.09002 * 110.41158 * 79.29704 * 9 8 6 31 31 H 1.09007 * 110.32044 * 264.95211 * 10 9 8 32 32 H 1.09000 * 110.32562 * 142.75376 * 10 9 8 33 33 H 0.96995 * 119.99955 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.61873 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0344 0.0016 6 6 5.7322 -0.0990 0.0028 7 1 6.1499 0.7958 0.4644 8 7 6.1980 -1.3173 0.7140 9 6 7.5710 -1.5416 0.1930 10 6 7.4750 -1.2102 -1.3117 11 6 6.2653 -0.2612 -1.4368 12 1 6.5804 0.7034 -1.8347 13 6 5.2081 -0.8710 -2.3209 14 1 4.8693 -1.8803 -2.1399 15 6 4.6735 -0.1402 -3.3608 16 7 3.7512 -0.6726 -4.1326 17 14 5.2593 1.6058 -3.6734 18 1 6.4108 1.5812 -4.6108 19 1 4.1539 2.3997 -4.2678 20 1 5.6787 2.2244 -2.3902 21 6 3.4765 -1.1949 0.0026 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6508 2.1373 0.0044 27 1 4.1367 2.1138 0.0001 28 1 6.2094 -1.1711 1.7123 29 1 7.8665 -2.5811 0.3352 30 1 8.2781 -0.8738 0.6849 31 1 7.3047 -2.1189 -1.8894 32 1 8.3839 -0.7116 -1.6483 33 1 3.3749 -0.1584 -4.8639 34 1 3.9753 -2.1528 0.0031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436881.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = 13.375753 kcal Electronic energy + Delta-G solvation = -16638.395683 eV Core-core repulsion = 14148.833450 eV Total energy + Delta-G solvation = -2489.562233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15578 -39.14793 -34.65960 -33.99389 -32.96685 -31.55844 -30.21102 -27.46272 -26.09277 -24.31244 -22.86816 -21.75996 -20.61620 -19.16354 -17.67965 -17.25681 -16.54538 -16.38670 -15.77613 -15.19665 -14.93125 -14.70377 -14.22305 -13.90825 -13.84523 -13.61010 -13.35354 -12.93901 -12.90813 -12.66858 -12.55211 -12.28805 -11.90324 -11.69826 -11.33957 -10.86571 -10.67528 -10.42162 -10.18049 -9.37494 -9.24971 -8.18473 -6.16981 0.51330 0.62608 1.31839 1.32060 1.41362 2.37208 3.06926 3.17688 3.41878 3.69972 4.02289 4.11765 4.18878 4.29049 4.33834 4.46216 4.54040 4.62235 4.80538 4.83284 4.83946 4.84812 4.93847 5.10988 5.14760 5.25809 5.37375 5.38153 5.56652 5.61979 5.73162 5.97522 6.14361 6.47773 6.64811 6.87484 7.37245 7.43870 8.98383 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.013463 C = 0.009717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.031179 B = 2079.223838 C = 2880.865777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.085 3.915 3 C -0.181 4.181 4 C -0.099 4.099 5 C -0.081 4.081 6 C 0.111 3.889 7 H 0.058 0.942 8 N -0.666 5.666 9 C 0.048 3.952 10 C -0.120 4.120 11 C 0.004 3.996 12 H 0.043 0.957 13 C -0.468 4.468 14 H 0.030 0.970 15 C 0.014 3.986 16 N -0.950 5.950 17 Si 0.923 3.077 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.236 1.236 21 C 0.138 3.862 22 N -0.522 5.522 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.156 0.844 27 H 0.141 0.859 28 H 0.340 0.660 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.257 0.743 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 6.135 10.933 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.125 4.125 5 C -0.083 4.083 6 C 0.001 3.999 7 H 0.076 0.924 8 N -0.296 5.296 9 C -0.081 4.081 10 C -0.159 4.159 11 C -0.015 4.015 12 H 0.062 0.938 13 C -0.506 4.506 14 H 0.049 0.951 15 C -0.182 4.182 16 N -0.591 5.591 17 Si 0.749 3.251 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.159 1.159 21 C -0.019 4.019 22 N -0.233 5.233 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.173 0.827 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.619 4.866 10.391 11.587 hybrid contribution 0.970 1.799 -0.552 2.117 sum 2.589 6.665 9.838 12.162 Atomic orbital electron populations 1.20672 0.87331 1.04097 1.02803 1.21731 0.98332 0.88658 0.96489 1.22044 0.94720 0.99628 1.03648 1.21599 0.95054 0.97970 0.97892 1.20422 0.96555 0.93614 0.97753 1.21533 0.90034 0.91749 0.96617 0.92397 1.63424 1.21572 1.35491 1.09079 1.22834 0.89285 1.01512 0.94461 1.22471 0.97656 0.99658 0.96101 1.20080 0.93687 0.95740 0.92003 0.93848 1.20895 1.19127 0.99570 1.11001 0.95147 1.25809 0.94945 1.01436 0.95978 1.70077 1.30174 1.39045 1.19786 0.86087 0.77832 0.81582 0.79633 1.19822 1.22402 1.15894 1.22234 0.88223 0.98629 0.92769 1.67435 1.10853 1.30743 1.14241 0.91317 0.90971 0.88176 0.82668 0.84104 0.84423 0.89862 0.92400 0.93369 0.91195 0.93363 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 10.17 71.24 0.72 -1.96 16 2 C 0.09 3.30 6.78 42.55 0.29 3.59 16 3 C -0.18 -6.41 9.74 22.36 0.22 -6.19 16 4 C -0.10 -3.71 9.86 22.47 0.22 -3.49 16 5 C -0.08 -3.35 4.04 -19.77 -0.08 -3.43 16 6 C 0.11 4.16 3.32 44.32 0.15 4.31 16 7 H 0.06 1.89 8.10 -2.38 -0.02 1.87 16 8 N -0.67 -22.00 6.28 -482.79 -3.03 -25.03 16 9 C 0.05 1.41 7.47 86.45 0.65 2.05 16 10 C -0.12 -4.43 6.64 31.49 0.21 -4.22 16 11 C 0.00 0.19 2.84 -10.65 -0.03 0.16 16 12 H 0.04 1.86 4.65 -2.39 -0.01 1.84 16 13 C -0.47 -25.48 6.30 25.60 0.16 -25.32 16 14 H 0.03 1.92 7.50 -2.91 -0.02 1.90 16 15 C 0.01 0.82 5.47 84.65 0.46 1.29 16 16 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 17 Si 0.92 43.24 27.24 68.60 1.87 45.11 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.24 -9.76 6.40 99.48 0.64 -9.12 16 21 C 0.14 6.33 8.92 84.67 0.75 7.09 16 22 N -0.52 -23.78 10.27 -183.90 -1.89 -25.67 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.10 2.16 8.08 -2.39 -0.02 2.14 16 26 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 27 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.34 9.21 8.92 -89.70 -0.80 8.41 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 2.00 7.71 -2.38 -0.02 1.98 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.14 6.57 7.38 -2.91 -0.02 6.55 16 Total: -1.00 -68.96 277.38 1.19 -67.76 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.22 Total: 23.60 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 3.72 Total: -26.11 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.62 Total: -110.36 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.87 Total: 45.11 kcal Total: -68.96 1.19 -67.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436881.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.137 kcal (2) G-P(sol) polarization free energy of solvation -68.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds