Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38228 * 119.62176 * 2 1 4 4 C 1.38622 * 119.15990 * 179.74657 * 3 2 1 5 5 C 1.38675 * 118.42488 * 0.47635 * 4 3 2 6 6 C 1.50700 * 120.41998 * 179.78374 * 5 4 3 7 7 H 1.09001 * 110.06465 * 339.46287 * 6 5 4 8 8 N 1.47907 * 109.91242 * 218.26259 * 6 5 4 9 9 C 1.48536 * 105.81586 * 215.31331 * 8 6 5 10 10 C 1.54937 * 103.22853 * 39.21264 * 9 8 6 11 11 C 1.53990 * 109.92064 * 100.67462 * 6 5 4 12 12 H 1.09006 * 110.30854 * 1.65774 * 11 6 5 13 13 C 1.50703 * 110.38939 * 239.53852 * 11 6 5 14 14 H 1.07998 * 120.00302 * 2.77810 * 13 11 6 15 15 C 1.37881 * 119.99501 * 182.77885 * 13 11 6 16 16 N 1.31515 * 120.00121 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99622 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46879 * 60.00409 * 17 15 13 19 19 H 1.48498 * 109.46780 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47404 * 300.00243 * 17 15 13 21 21 C 1.38184 * 119.16097 * 359.50000 * 5 4 3 22 22 N 1.31859 * 119.61709 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46769 * 270.01898 * 1 2 3 24 24 H 1.08997 * 109.46740 * 30.02010 * 1 2 3 25 25 H 1.09003 * 109.47167 * 150.02571 * 1 2 3 26 26 H 1.08000 * 120.41260 * 359.95573 * 3 2 1 27 27 H 1.07998 * 120.78866 * 180.22623 * 4 3 2 28 28 H 1.00900 * 110.99568 * 94.80468 * 8 6 5 29 29 H 1.09008 * 110.66385 * 157.64204 * 9 8 6 30 30 H 1.09002 * 110.66703 * 280.60510 * 9 8 6 31 31 H 1.08991 * 110.72717 * 80.93674 * 10 9 8 32 32 H 1.08997 * 110.72390 * 204.05191 * 10 9 8 33 33 H 0.97001 * 119.99366 * 179.97438 * 16 15 13 34 34 H 1.07995 * 119.62081 * 180.25395 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0054 5 6 4.2267 -0.0344 0.0004 6 6 5.7323 -0.0989 0.0010 7 1 6.1472 0.8445 -0.3539 8 7 6.1893 -1.2077 -0.8648 9 6 7.4008 -1.7615 -0.2076 10 6 7.0396 -1.7153 1.2984 11 6 6.2442 -0.3955 1.4227 12 1 5.4059 -0.5222 2.1079 13 6 7.1446 0.7151 1.8989 14 1 7.3076 1.5826 1.2766 15 6 7.7603 0.6238 3.1292 16 7 7.5614 -0.4324 3.8873 17 14 8.8770 2.0001 3.7192 18 1 8.1036 3.2655 3.7982 19 1 9.4111 1.6624 5.0630 20 1 10.0032 2.1670 2.7659 21 6 3.4766 -1.1949 0.0009 22 7 2.1587 -1.1463 0.0005 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6508 2.1373 -0.0007 27 1 4.1367 2.1137 0.0092 28 1 6.4013 -0.8769 -1.7941 29 1 7.5777 -2.7879 -0.5294 30 1 8.2706 -1.1388 -0.4166 31 1 6.4180 -2.5676 1.5723 32 1 7.9410 -1.6846 1.9104 33 1 7.9950 -0.4967 4.7526 34 1 3.9754 -2.1528 0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = 26.003944 kcal Electronic energy + Delta-G solvation = -16086.542971 eV Core-core repulsion = 13597.528337 eV Total energy + Delta-G solvation = -2489.014634 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87986 -37.55636 -32.97696 -32.57355 -31.79939 -29.09715 -28.77696 -26.23937 -24.21599 -23.11361 -21.49346 -20.20429 -19.16804 -16.72346 -16.00138 -15.86754 -15.16065 -14.70692 -14.43083 -14.06247 -13.72763 -12.82290 -12.65124 -12.45900 -12.19131 -12.05245 -11.97635 -11.46682 -11.10720 -10.97346 -10.73047 -10.61582 -10.27892 -9.99484 -9.77176 -9.19657 -9.03861 -8.88087 -8.42946 -8.09318 -7.88551 -6.08650 -4.14916 1.63912 1.80665 3.25468 3.31255 3.32715 4.27383 4.35549 4.74044 4.91827 5.13121 5.22329 5.42514 5.58917 5.65422 5.73663 5.81407 5.85194 5.92321 6.09786 6.15747 6.27035 6.33468 6.43424 6.57904 6.62386 6.89872 7.03012 7.15095 7.27529 7.50307 7.59093 7.79264 7.87186 8.00610 8.34455 8.51639 8.86617 9.49505 10.98854 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.007582 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.235892 B = 3692.299761 C = 4189.385874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.101 3.899 3 C -0.177 4.177 4 C -0.075 4.075 5 C -0.099 4.099 6 C 0.110 3.890 7 H 0.053 0.947 8 N -0.672 5.672 9 C 0.041 3.959 10 C -0.101 4.101 11 C 0.056 3.944 12 H 0.033 0.967 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.127 3.873 22 N -0.493 5.493 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.323 0.677 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.262 0.738 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 1.392 -7.620 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 C -0.197 4.197 4 C -0.101 4.101 5 C -0.102 4.102 6 C 0.000 4.000 7 H 0.071 0.929 8 N -0.300 5.300 9 C -0.088 4.088 10 C -0.139 4.139 11 C 0.037 3.963 12 H 0.051 0.949 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.522 5.522 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.030 4.030 22 N -0.203 5.203 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.763 0.019 -7.202 10.589 hybrid contribution 1.913 2.348 0.286 3.042 sum -5.850 2.366 -6.916 9.362 Atomic orbital electron populations 1.20613 0.89676 1.02651 1.02508 1.21135 0.96542 0.88791 0.97191 1.21776 0.94797 0.98750 1.04400 1.21465 0.94063 0.98244 0.96360 1.20989 0.97504 0.93526 0.98140 1.21383 0.88562 0.92889 0.97145 0.92927 1.62909 1.31421 1.31279 1.04369 1.23018 0.90851 0.97889 0.97003 1.22415 1.01642 0.97778 0.92081 1.19473 0.95047 0.93578 0.88176 0.94868 1.21148 1.28233 1.03848 1.02417 0.92809 1.24954 0.96597 0.95691 0.96557 1.69964 1.43251 1.27926 1.11067 0.86690 0.81010 0.82535 0.77983 1.20268 1.21184 1.20272 1.22591 0.88004 0.98961 0.93464 1.67526 1.10396 1.29134 1.13205 0.90997 0.91373 0.91002 0.85683 0.85275 0.86346 0.91990 0.94572 0.94275 0.89849 0.92803 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.17 36.01 0.37 -0.79 16 2 C 0.10 1.63 6.78 -82.58 -0.56 1.07 16 3 C -0.18 -2.76 9.74 -39.44 -0.38 -3.14 16 4 C -0.08 -1.31 9.84 -39.28 -0.39 -1.69 16 5 C -0.10 -1.91 4.76 -104.48 -0.50 -2.41 16 6 C 0.11 2.25 3.16 -67.79 -0.21 2.03 16 7 H 0.05 1.08 7.31 -51.93 -0.38 0.70 16 8 N -0.67 -12.26 6.38 -104.33 -0.67 -12.93 16 9 C 0.04 0.79 7.55 -1.90 -0.01 0.77 16 10 C -0.10 -2.31 6.11 -24.87 -0.15 -2.46 16 11 C 0.06 1.37 2.54 -90.41 -0.23 1.14 16 12 H 0.03 0.91 7.68 -51.93 -0.40 0.51 16 13 C -0.52 -13.70 8.54 -34.44 -0.29 -14.00 16 14 H 0.05 1.40 7.35 -52.49 -0.39 1.01 16 15 C 0.06 1.73 5.08 -17.82 -0.09 1.64 16 16 N -0.88 -24.86 11.91 55.43 0.66 -24.20 16 17 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.13 2.45 10.50 -17.55 -0.18 2.26 16 22 N -0.49 -9.17 10.27 -9.47 -0.10 -9.27 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.32 5.16 8.92 -39.29 -0.35 4.81 16 29 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 2.13 6.54 -51.93 -0.34 1.79 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.16 3.06 7.70 -52.49 -0.40 2.66 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -28.57 282.91 -8.27 -36.85 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.77 Total: 5.11 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.64 Total: -15.57 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.10 Total: -46.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.57 -8.27 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.850 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds