Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38228 * 119.62176 * 2 1 4 4 C 1.38622 * 119.15990 * 179.74657 * 3 2 1 5 5 C 1.38675 * 118.42488 * 0.47635 * 4 3 2 6 6 C 1.50700 * 120.41998 * 179.78374 * 5 4 3 7 7 H 1.09001 * 110.06465 * 339.46287 * 6 5 4 8 8 N 1.47907 * 109.91242 * 218.26259 * 6 5 4 9 9 C 1.48536 * 105.81586 * 215.31331 * 8 6 5 10 10 C 1.54937 * 103.22853 * 39.21264 * 9 8 6 11 11 C 1.53990 * 109.92064 * 100.67462 * 6 5 4 12 12 H 1.09006 * 110.30854 * 1.65774 * 11 6 5 13 13 C 1.50703 * 110.38939 * 239.53852 * 11 6 5 14 14 H 1.07998 * 120.00302 * 2.77810 * 13 11 6 15 15 C 1.37881 * 119.99501 * 182.77885 * 13 11 6 16 16 N 1.31515 * 120.00121 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99622 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46879 * 60.00409 * 17 15 13 19 19 H 1.48498 * 109.46780 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47404 * 300.00243 * 17 15 13 21 21 C 1.38184 * 119.16097 * 359.50000 * 5 4 3 22 22 N 1.31859 * 119.61709 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46769 * 270.01898 * 1 2 3 24 24 H 1.08997 * 109.46740 * 30.02010 * 1 2 3 25 25 H 1.09003 * 109.47167 * 150.02571 * 1 2 3 26 26 H 1.08000 * 120.41260 * 359.95573 * 3 2 1 27 27 H 1.07998 * 120.78866 * 180.22623 * 4 3 2 28 28 H 1.00900 * 110.99568 * 94.80468 * 8 6 5 29 29 H 1.09008 * 110.66385 * 157.64204 * 9 8 6 30 30 H 1.09002 * 110.66703 * 280.60510 * 9 8 6 31 31 H 1.08991 * 110.72717 * 80.93674 * 10 9 8 32 32 H 1.08997 * 110.72390 * 204.05191 * 10 9 8 33 33 H 0.97001 * 119.99366 * 179.97438 * 16 15 13 34 34 H 1.07995 * 119.62081 * 180.25395 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0054 5 6 4.2267 -0.0344 0.0004 6 6 5.7323 -0.0989 0.0010 7 1 6.1472 0.8445 -0.3539 8 7 6.1893 -1.2077 -0.8648 9 6 7.4008 -1.7615 -0.2076 10 6 7.0396 -1.7153 1.2984 11 6 6.2442 -0.3955 1.4227 12 1 5.4059 -0.5222 2.1079 13 6 7.1446 0.7151 1.8989 14 1 7.3076 1.5826 1.2766 15 6 7.7603 0.6238 3.1292 16 7 7.5614 -0.4324 3.8873 17 14 8.8770 2.0001 3.7192 18 1 8.1036 3.2655 3.7982 19 1 9.4111 1.6624 5.0630 20 1 10.0032 2.1670 2.7659 21 6 3.4766 -1.1949 0.0009 22 7 2.1587 -1.1463 0.0005 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6508 2.1373 -0.0007 27 1 4.1367 2.1137 0.0092 28 1 6.4013 -0.8769 -1.7941 29 1 7.5777 -2.7879 -0.5294 30 1 8.2706 -1.1388 -0.4166 31 1 6.4180 -2.5676 1.5723 32 1 7.9410 -1.6846 1.9104 33 1 7.9950 -0.4967 4.7526 34 1 3.9754 -2.1528 0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = 7.800000 kcal Electronic energy + Delta-G solvation = -16087.332353 eV Core-core repulsion = 13597.528337 eV Total energy + Delta-G solvation = -2489.804016 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26602 -39.18625 -34.84872 -34.03372 -33.10288 -30.94520 -30.18827 -27.78097 -26.00936 -24.49894 -22.88436 -21.87792 -20.89489 -18.58845 -17.48403 -17.41935 -16.70318 -16.38842 -16.10763 -15.30348 -15.13150 -14.39583 -14.29694 -13.96799 -13.53095 -13.30451 -13.25205 -12.96496 -12.89527 -12.58704 -12.49468 -12.46591 -12.07603 -11.82241 -11.50498 -10.92618 -10.57716 -10.47773 -10.35435 -9.50472 -9.40362 -8.14799 -6.27931 0.29832 0.44611 1.40380 1.40860 1.48650 2.39779 2.91381 3.14808 3.40211 3.54395 3.94391 4.08446 4.17117 4.25475 4.32339 4.49872 4.54528 4.62549 4.75191 4.81897 4.85691 4.91339 4.97929 5.19217 5.24724 5.31795 5.36226 5.50981 5.56037 5.75642 5.80896 5.92685 5.94601 6.35108 6.58840 6.82048 7.16220 7.40252 8.92237 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.007582 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.235892 B = 3692.299761 C = 4189.385874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.095 3.905 3 C -0.170 4.170 4 C -0.084 4.084 5 C -0.122 4.122 6 C 0.123 3.877 7 H 0.050 0.950 8 N -0.664 5.664 9 C 0.053 3.947 10 C -0.099 4.099 11 C 0.054 3.946 12 H -0.010 1.010 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.015 3.985 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.113 3.887 22 N -0.514 5.514 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.165 0.835 27 H 0.141 0.859 28 H 0.341 0.659 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.261 0.739 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 2.884 -8.800 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 C -0.189 4.189 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.013 3.987 7 H 0.068 0.932 8 N -0.293 5.293 9 C -0.076 4.076 10 C -0.138 4.138 11 C 0.035 3.965 12 H 0.008 0.992 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.044 4.044 22 N -0.224 5.224 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.182 0.818 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.596 1.512 -8.408 12.119 hybrid contribution 2.069 1.888 0.664 2.878 sum -6.527 3.400 -7.744 10.683 Atomic orbital electron populations 1.20737 0.86441 1.04325 1.03651 1.21931 0.98705 0.88329 0.95364 1.22190 0.94057 1.00236 1.02450 1.21740 0.95341 0.97925 0.96040 1.20926 0.96740 0.94536 1.00228 1.21075 0.89623 0.93138 0.94881 0.93173 1.62890 1.30872 1.30605 1.04919 1.22909 0.91031 0.99571 0.94068 1.22254 0.99961 0.96908 0.94670 1.19361 0.93519 0.93814 0.89823 0.99182 1.21485 1.28315 1.04382 1.02676 0.92587 1.25736 0.98038 0.97847 0.96806 1.70104 1.44324 1.29756 1.11317 0.85686 0.79310 0.79706 0.77439 1.19672 1.21160 1.19327 1.22456 0.88663 0.98630 0.94606 1.67554 1.09990 1.30742 1.14083 0.89935 0.88248 0.90858 0.81763 0.84125 0.84342 0.89393 0.94433 0.95162 0.92749 0.92976 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.17 71.24 0.72 -1.22 16 2 C 0.09 2.86 6.78 42.55 0.29 3.15 16 3 C -0.17 -4.82 9.74 22.36 0.22 -4.61 16 4 C -0.08 -2.83 9.84 22.47 0.22 -2.61 16 5 C -0.12 -4.70 4.76 -19.77 -0.09 -4.79 16 6 C 0.12 5.04 3.16 44.31 0.14 5.18 16 7 H 0.05 2.05 7.31 -2.39 -0.02 2.03 16 8 N -0.66 -23.76 6.38 -484.00 -3.09 -26.85 16 9 C 0.05 1.99 7.55 86.65 0.65 2.65 16 10 C -0.10 -4.71 6.11 31.80 0.19 -4.51 16 11 C 0.05 2.70 2.54 -10.66 -0.03 2.67 16 12 H -0.01 -0.58 7.68 -2.38 -0.02 -0.60 16 13 C -0.53 -28.49 8.54 25.60 0.22 -28.27 16 14 H 0.06 2.91 7.35 -2.91 -0.02 2.89 16 15 C 0.02 0.82 5.08 84.66 0.43 1.25 16 16 N -0.92 -53.02 11.91 21.45 0.26 -52.76 16 17 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.11 4.41 10.50 84.67 0.89 5.30 16 22 N -0.51 -18.85 10.27 -183.88 -1.89 -20.74 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.34 10.32 8.92 -89.69 -0.80 9.52 16 29 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 2.87 6.54 -2.39 -0.02 2.86 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.15 5.90 7.70 -2.91 -0.02 5.87 16 Total: -1.00 -62.96 282.91 1.45 -61.51 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.29 Total: 19.88 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.86 Total: -25.81 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -4.72 Total: -100.35 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -62.96 1.45 -61.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.308 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds