Wall clock time and date at job start Mon Mar 30 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48560 * 111.00195 * 2 1 4 4 C 1.54379 * 104.59588 * 200.96375 * 3 2 1 5 5 C 1.54263 * 105.06016 * 23.85103 * 4 3 2 6 6 H 1.08997 * 110.31918 * 119.00285 * 5 4 3 7 7 C 1.50702 * 110.32019 * 241.10277 * 5 4 3 8 8 H 1.08002 * 119.99441 * 118.55329 * 7 5 4 9 9 C 1.37871 * 120.00075 * 298.54905 * 7 5 4 10 10 N 1.31514 * 120.00481 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99886 * 179.73007 * 9 7 5 12 12 H 1.48502 * 109.46964 * 270.27509 * 11 9 7 13 13 H 1.48505 * 109.47036 * 30.26897 * 11 9 7 14 14 H 1.48490 * 109.47395 * 150.27411 * 11 9 7 15 15 C 1.48559 * 111.00040 * 244.58286 * 2 1 3 16 16 H 1.09006 * 110.40903 * 40.25589 * 15 2 1 17 17 C 1.50702 * 110.40989 * 277.82114 * 15 2 1 18 18 C 1.38227 * 119.62043 * 9.82224 * 17 15 2 19 19 C 1.38626 * 119.16206 * 179.97438 * 18 17 15 20 20 C 1.38682 * 118.42198 * 0.02562 * 19 18 17 21 21 C 1.38179 * 119.15877 * 0.02562 * 20 19 18 22 22 N 1.31858 * 119.61440 * 189.55242 * 17 15 2 23 23 H 1.09002 * 109.47499 * 60.12519 * 1 2 3 24 24 H 1.09008 * 109.47390 * 180.12690 * 1 2 3 25 25 H 1.09000 * 109.47502 * 300.12234 * 1 2 3 26 26 H 1.08994 * 110.41161 * 82.18201 * 3 2 1 27 27 H 1.09009 * 110.50837 * 319.79225 * 3 2 1 28 28 H 1.09002 * 110.32116 * 264.95580 * 4 3 2 29 29 H 1.08997 * 110.32097 * 142.74723 * 4 3 2 30 30 H 0.97005 * 119.99656 * 359.72741 * 10 9 7 31 31 H 1.07999 * 120.41600 * 359.95621 * 18 17 15 32 32 H 1.08001 * 120.79099 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.41743 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.61298 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4432 -0.0540 -1.3586 6 1 3.6953 0.1552 -2.3982 7 6 4.4180 -1.0430 -0.7733 8 1 4.0653 -1.9944 -0.4034 9 6 5.7600 -0.7332 -0.7100 10 7 6.1895 0.4251 -1.1609 11 14 6.9673 -1.9561 0.0224 12 1 7.0911 -1.7154 1.4826 13 1 6.4756 -3.3378 -0.2114 14 1 8.2947 -1.7875 -0.6214 15 6 2.0013 -0.5953 -1.2527 16 1 1.4097 -0.2712 -2.1089 17 6 2.0103 -2.0993 -1.1575 18 6 1.3746 -2.7206 -0.0989 19 6 1.3882 -4.1046 -0.0210 20 6 2.0442 -4.8152 -1.0149 21 6 2.6585 -4.1250 -2.0424 22 7 2.6198 -2.8074 -2.0878 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3634 -1.0277 0.0023 25 1 -0.3634 0.5157 0.8889 26 1 2.0079 1.7916 1.0120 27 1 1.4103 2.0229 -0.6591 28 1 4.1483 1.1748 0.2934 29 1 3.6935 2.0995 -1.1700 30 1 5.5627 1.0600 -1.5416 31 1 0.8738 -2.1351 0.6580 32 1 0.8996 -4.6172 0.7944 33 1 2.0752 -5.8943 -0.9858 34 1 3.1711 -4.6711 -2.8205 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260470785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:00 Heat of formation + Delta-G solvation = 30.313717 kcal Electronic energy + Delta-G solvation = -16769.897739 eV Core-core repulsion = 14281.069991 eV Total energy + Delta-G solvation = -2488.827748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37984 -39.43047 -35.49445 -33.37962 -32.71533 -32.05331 -29.13845 -26.99368 -25.66998 -24.24192 -23.87417 -21.61690 -21.26097 -18.89581 -17.57538 -17.12491 -16.78924 -16.34978 -15.77447 -15.66425 -15.31288 -14.72612 -14.47066 -13.86572 -13.80903 -13.50122 -13.18902 -12.98784 -12.81077 -12.54567 -12.19921 -11.99716 -11.93935 -11.72931 -11.55965 -10.62819 -10.50548 -10.35259 -10.05483 -9.58993 -9.40650 -8.44064 -6.10481 0.41564 0.61155 1.48122 1.57258 1.73636 2.59990 2.88455 3.11007 3.32569 3.73481 3.93781 4.05839 4.12180 4.17355 4.25658 4.37330 4.43619 4.52451 4.60916 4.64110 4.76639 4.86249 4.90527 4.95270 5.06160 5.16679 5.30659 5.38764 5.40401 5.56761 5.95151 6.02122 6.17628 6.24800 6.36861 6.81336 7.38616 7.61800 8.94653 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.013989 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.784010 B = 2001.148387 C = 3091.581274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.511 5.511 3 C 0.048 3.952 4 C -0.111 4.111 5 C 0.041 3.959 6 H -0.013 1.013 7 C -0.547 4.547 8 H 0.042 0.958 9 C -0.038 4.038 10 N -0.949 5.949 11 Si 1.105 2.895 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.286 1.286 15 C 0.123 3.877 16 H 0.043 0.957 17 C 0.161 3.839 18 C -0.176 4.176 19 C -0.083 4.083 20 C -0.185 4.185 21 C 0.075 3.925 22 N -0.505 5.505 23 H 0.028 0.972 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 -6.352 3.293 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.235 5.235 3 C -0.080 4.080 4 C -0.150 4.150 5 C 0.022 3.978 6 H 0.005 0.995 7 C -0.585 4.585 8 H 0.060 0.940 9 C -0.234 4.234 10 N -0.588 5.588 11 Si 0.930 3.070 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.212 1.212 15 C 0.014 3.986 16 H 0.061 0.939 17 C 0.024 3.976 18 C -0.196 4.196 19 C -0.109 4.109 20 C -0.205 4.205 21 C -0.083 4.083 22 N -0.215 5.215 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.424 -6.453 3.436 12.732 hybrid contribution -1.805 0.627 -0.778 2.064 sum -12.230 -5.826 2.657 13.805 Atomic orbital electron populations 1.22766 0.86817 1.02932 1.01701 1.65104 1.08873 1.15492 1.34018 1.23026 0.94361 0.89307 1.01314 1.22371 0.96132 0.97336 0.99141 1.19399 0.91614 0.93527 0.93294 0.99486 1.22053 0.93524 1.02144 1.40809 0.93953 1.26819 0.99724 1.00195 0.96696 1.70848 1.38601 1.08515 1.40851 0.83053 0.74142 0.73587 0.76220 1.20326 1.20747 1.21222 1.21265 0.96652 0.90154 0.90542 0.93927 1.20640 0.91010 0.95037 0.90919 1.22217 1.02016 0.96022 0.99316 1.21940 0.96876 0.93458 0.98612 1.22372 0.99916 1.02548 0.95640 1.23083 0.96933 0.89538 0.98702 1.67317 1.15451 1.09153 1.29571 0.95303 0.90455 0.89179 0.89241 0.92960 0.93898 0.94114 0.93025 0.83307 0.81836 0.81851 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.83 127.69 1.13 1.29 16 2 N -0.51 -18.79 4.45 -887.03 -3.95 -22.73 16 3 C 0.05 1.73 6.49 86.45 0.56 2.29 16 4 C -0.11 -5.24 5.03 31.49 0.16 -5.08 16 5 C 0.04 2.14 2.47 -10.65 -0.03 2.11 16 6 H -0.01 -0.75 8.04 -2.39 -0.02 -0.77 16 7 C -0.55 -31.35 7.37 25.60 0.19 -31.16 16 8 H 0.04 2.48 5.66 -2.91 -0.02 2.46 16 9 C -0.04 -2.23 5.09 84.65 0.43 -1.80 16 10 N -0.95 -59.32 13.26 21.45 0.28 -59.03 16 11 Si 1.11 53.76 29.90 68.60 2.05 55.81 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 15 C 0.12 5.34 2.67 44.31 0.12 5.45 16 16 H 0.04 1.83 7.90 -2.38 -0.02 1.81 16 17 C 0.16 6.82 4.16 42.55 0.18 6.99 16 18 C -0.18 -6.15 8.52 22.36 0.19 -5.96 16 19 C -0.08 -2.36 10.18 22.47 0.23 -2.14 16 20 C -0.19 -5.26 10.11 22.36 0.23 -5.03 16 21 C 0.08 2.66 11.18 84.67 0.95 3.61 16 22 N -0.51 -22.39 9.01 -183.88 -1.66 -24.05 16 23 H 0.03 0.75 7.97 -2.39 -0.02 0.73 16 24 H 0.08 1.95 5.98 -2.38 -0.01 1.94 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.05 1.68 7.98 -2.38 -0.02 1.66 16 28 H 0.04 2.27 7.24 -2.39 -0.02 2.25 16 29 H 0.04 1.88 7.92 -2.39 -0.02 1.86 16 30 H 0.26 16.21 6.01 -92.70 -0.56 15.65 16 31 H 0.15 4.75 5.38 -2.91 -0.02 4.74 16 32 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.16 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -70.84 270.59 2.36 -68.48 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.30 Total: 10.94 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.33 Total: -29.41 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.32 Total: -105.82 kcal Atomic # 14 Polarization: 53.76 SS G_CDS: 2.05 Total: 55.81 kcal Total: -70.84 2.36 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.797 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds