Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48537 * 110.99466 * 2 1 4 4 C 1.55202 * 103.23520 * 159.74580 * 3 2 1 5 5 C 1.54597 * 102.80067 * 322.56790 * 4 3 2 6 6 H 1.09004 * 110.30693 * 140.94887 * 5 4 3 7 7 C 1.50694 * 110.30865 * 263.01904 * 5 4 3 8 8 H 1.08000 * 120.00563 * 117.21099 * 7 5 4 9 9 C 1.37885 * 119.99902 * 297.20936 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48498 * 109.47200 * 59.99994 * 11 9 7 13 13 H 1.48498 * 109.46671 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47156 * 300.00008 * 11 9 7 15 15 C 1.47894 * 111.00372 * 117.39812 * 2 1 3 16 16 H 1.09006 * 109.91878 * 333.51399 * 15 2 1 17 17 C 1.50700 * 110.08024 * 94.71266 * 15 2 1 18 18 C 1.38232 * 119.61790 * 242.68677 * 17 15 2 19 19 C 1.38628 * 119.15724 * 179.97438 * 18 17 15 20 20 C 1.38666 * 118.42579 * 359.97438 * 19 18 17 21 21 C 1.38184 * 119.16267 * 0.02562 * 20 19 18 22 22 N 1.31851 * 119.61944 * 62.41749 * 17 15 2 23 23 H 1.09002 * 109.47370 * 302.59476 * 1 2 3 24 24 H 1.09000 * 109.47884 * 62.60204 * 1 2 3 25 25 H 1.09007 * 109.46981 * 182.60213 * 1 2 3 26 26 H 1.08997 * 110.67155 * 278.15468 * 3 2 1 27 27 H 1.09002 * 110.66567 * 41.29052 * 3 2 1 28 28 H 1.09000 * 110.79916 * 204.24094 * 4 3 2 29 29 H 1.09003 * 110.75929 * 80.87094 * 4 3 2 30 30 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 31 31 H 1.07997 * 120.41991 * 0.02562 * 18 17 15 32 32 H 1.08006 * 120.78406 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.42173 * 180.02562 * 20 19 18 34 34 H 1.08003 * 119.61965 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3868 0.0000 4 6 3.4518 1.2107 0.5230 5 6 3.2983 0.1054 1.5930 6 1 4.1468 -0.5778 1.5555 7 6 3.1813 0.7181 2.9648 8 1 2.2796 0.5797 3.5429 9 6 4.2254 1.4553 3.4819 10 7 5.3233 1.6242 2.7778 11 14 4.0773 2.2212 5.1793 12 1 3.8588 1.1527 6.1872 13 1 5.3267 2.9565 5.5012 14 1 2.9291 3.1626 5.1991 15 6 1.9991 -0.6353 1.2258 16 1 1.2759 -0.5404 2.0358 17 6 2.2931 -2.0908 0.9685 18 6 1.6041 -3.0616 1.6712 19 6 1.8818 -4.3975 1.4265 20 6 2.8460 -4.7087 0.4798 21 6 3.4939 -3.6840 -0.1834 22 7 3.2008 -2.4237 0.0720 23 1 -0.3634 0.5536 0.8658 24 1 -0.3635 0.4729 -0.9123 25 1 -0.3633 -1.0267 0.0467 26 1 2.0040 1.7978 -1.0095 27 1 1.4236 2.0205 0.6730 28 1 3.8160 2.1346 0.9723 29 1 4.1142 0.8826 -0.2781 30 1 6.0580 2.1425 3.1418 31 1 0.8583 -2.7827 2.4008 32 1 1.3595 -5.1775 1.9607 33 1 3.0876 -5.7388 0.2634 34 1 4.2464 -3.9179 -0.9219 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260470801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = 41.035599 kcal Electronic energy + Delta-G solvation = -16389.764597 eV Core-core repulsion = 13901.401784 eV Total energy + Delta-G solvation = -2488.362812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83049 -37.72612 -33.13161 -32.01610 -31.41223 -30.40828 -27.62931 -25.62836 -23.69557 -23.08963 -22.25547 -20.03949 -19.18489 -16.72125 -16.14038 -15.58510 -15.26396 -14.73051 -14.11707 -14.09548 -13.64246 -13.03174 -12.76161 -12.66522 -12.45068 -12.15378 -11.58038 -11.00068 -10.89200 -10.77362 -10.61310 -10.44217 -10.15871 -9.86572 -9.61513 -9.36492 -8.78434 -8.74500 -8.39795 -8.33040 -7.68407 -6.00144 -4.05851 1.60012 1.76525 3.30462 3.35782 3.37500 4.27740 4.41415 4.79554 4.91131 5.17221 5.28630 5.36343 5.46285 5.61234 5.68368 5.84624 5.97470 6.05345 6.15600 6.22153 6.25928 6.35749 6.48524 6.53500 6.59784 6.76362 7.14827 7.23200 7.31280 7.64146 7.71226 7.81681 7.93619 8.00979 8.44906 8.67281 8.96350 9.57597 11.07485 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.008962 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.104522 B = 3123.710176 C = 3570.941409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.512 5.512 3 C 0.040 3.960 4 C -0.095 4.095 5 C 0.060 3.940 6 H 0.041 0.959 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.065 3.935 10 N -0.883 5.883 11 Si 0.888 3.112 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.112 3.888 16 H 0.060 0.940 17 C 0.176 3.824 18 C -0.178 4.178 19 C -0.080 4.080 20 C -0.195 4.195 21 C 0.096 3.904 22 N -0.453 5.453 23 H 0.024 0.976 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.261 0.739 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -7.695 -3.865 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.235 5.235 3 C -0.087 4.087 4 C -0.134 4.134 5 C 0.041 3.959 6 H 0.059 0.941 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.137 4.137 10 N -0.521 5.521 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.003 3.997 16 H 0.078 0.922 17 C 0.037 3.963 18 C -0.198 4.198 19 C -0.106 4.106 20 C -0.215 4.215 21 C -0.062 4.062 22 N -0.161 5.161 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.146 -7.211 -4.784 10.614 hybrid contribution -0.831 0.039 2.181 2.334 sum -6.977 -7.172 -2.603 10.339 Atomic orbital electron populations 1.22468 0.89817 1.00735 1.00107 1.64519 1.06047 1.15933 1.37038 1.23266 0.98211 0.88296 0.98977 1.22408 0.91945 1.01757 0.97240 1.19422 0.90200 0.92626 0.93652 0.94051 1.21204 1.01200 1.32810 1.00567 0.92927 1.24941 0.95283 0.96287 0.97233 1.69977 1.05047 1.40031 1.37036 0.86724 0.77351 0.79452 0.84870 1.20322 1.21227 1.20313 1.21644 1.00023 0.88152 0.89839 0.92227 1.21355 0.89373 0.96179 0.89346 1.21992 1.02132 0.93521 1.02164 1.21420 0.96531 0.96220 0.96473 1.21992 0.99486 1.00457 0.99595 1.22784 0.97534 0.88211 0.97628 1.67551 1.14006 1.19582 1.14992 0.95752 0.92126 0.92573 0.92012 0.94338 0.90175 0.93857 0.92903 0.85501 0.85662 0.85704 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 60.06 0.56 0.86 16 2 N -0.51 -10.40 5.18 -231.98 -1.20 -11.60 16 3 C 0.04 0.83 6.57 -1.75 -0.01 0.81 16 4 C -0.09 -2.31 6.16 -24.73 -0.15 -2.47 16 5 C 0.06 1.54 2.41 -90.42 -0.22 1.32 16 6 H 0.04 1.19 7.41 -51.93 -0.38 0.81 16 7 C -0.52 -14.19 8.51 -34.44 -0.29 -14.48 16 8 H 0.05 1.41 7.34 -52.49 -0.39 1.02 16 9 C 0.06 1.79 5.09 -17.82 -0.09 1.70 16 10 N -0.88 -25.40 12.02 55.43 0.67 -24.73 16 11 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.11 2.45 2.42 -67.80 -0.16 2.29 16 16 H 0.06 1.30 6.73 -51.93 -0.35 0.95 16 17 C 0.18 3.59 5.65 -82.59 -0.47 3.12 16 18 C -0.18 -3.04 9.72 -39.44 -0.38 -3.42 16 19 C -0.08 -1.16 10.17 -39.28 -0.40 -1.56 16 20 C -0.20 -2.75 10.11 -39.44 -0.40 -3.15 16 21 C 0.10 1.59 11.18 -17.55 -0.20 1.39 16 22 N -0.45 -9.32 9.78 -9.47 -0.09 -9.41 16 23 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.80 7.96 -51.93 -0.41 0.38 16 28 H 0.08 2.12 6.64 -51.93 -0.34 1.77 16 29 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.13 1.94 7.96 -52.49 -0.42 1.52 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 282.33 15.07 4.25 4.25 Total: -1.00 -30.15 282.33 -8.41 -38.56 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.81 Total: 0.35 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.21 Total: -13.58 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.63 Total: -45.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.15 -8.41 -38.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.598 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds