Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36907 * 119.99781 * 2 1 4 4 H 1.08005 * 120.00040 * 153.92818 * 3 2 1 5 5 C 1.38813 * 120.00112 * 334.20443 * 3 2 1 6 6 N 1.31574 * 119.99829 * 158.15577 * 5 3 2 7 7 Si 1.86801 * 120.00069 * 338.15266 * 5 3 2 8 8 H 1.48500 * 109.47001 * 85.08112 * 7 5 3 9 9 H 1.48500 * 109.47087 * 205.08407 * 7 5 3 10 10 H 1.48501 * 109.46887 * 325.08526 * 7 5 3 11 11 C 1.38833 * 119.99761 * 179.97438 * 2 1 3 12 12 C 1.39100 * 119.80501 * 185.00204 * 11 2 1 13 13 C 1.38719 * 119.27704 * 180.02562 * 12 11 2 14 14 C 1.38124 * 118.57079 * 359.78362 * 13 12 11 15 15 C 1.38671 * 119.07599 * 0.30036 * 14 13 12 16 16 N 1.31699 * 121.15124 * 359.53281 * 15 14 13 17 17 C 1.50501 * 122.45852 * 180.40318 * 14 13 12 18 18 C 1.52792 * 110.45803 * 342.09776 * 17 14 13 19 19 C 1.53306 * 108.51861 * 51.21202 * 18 17 14 20 20 C 1.50360 * 118.63967 * 179.45025 * 13 12 11 21 21 H 1.08998 * 109.46958 * 95.27912 * 1 2 3 22 22 H 1.08998 * 109.47416 * 215.27811 * 1 2 3 23 23 H 1.08997 * 109.47497 * 335.27477 * 1 2 3 24 24 H 0.97001 * 119.99652 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.35710 * 359.97438 * 12 11 2 26 26 H 1.08000 * 119.42600 * 179.82779 * 15 14 13 27 27 H 1.09002 * 109.30357 * 102.39585 * 17 14 13 28 28 H 1.09001 * 109.30768 * 221.79029 * 17 14 13 29 29 H 1.08999 * 109.63081 * 170.92886 * 18 17 14 30 30 H 1.09006 * 109.62350 * 291.50502 * 18 17 14 31 31 H 1.09001 * 109.62971 * 49.81611 * 19 18 17 32 32 H 1.08999 * 109.63639 * 170.21493 * 19 18 17 33 33 H 1.08997 * 109.30118 * 283.07989 * 20 13 12 34 34 H 1.08996 * 109.30429 * 42.46803 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1471 1.2333 0.4111 5 6 1.5592 2.3279 -0.5231 6 7 1.9899 3.5167 -0.1592 7 14 0.1533 2.1773 -1.7439 8 1 -1.1276 2.0270 -1.0076 9 1 0.0984 3.3974 -2.5887 10 1 0.3714 0.9878 -2.6057 11 6 2.1591 -1.2024 0.0005 12 6 3.5461 -1.1999 0.1058 13 6 4.2287 -2.4076 0.1047 14 6 3.5013 -3.5774 0.0029 15 6 2.1203 -3.5054 -0.1005 16 7 1.4962 -2.3457 -0.0940 17 6 4.1509 -4.9350 0.0021 18 6 5.6400 -4.8143 -0.3181 19 6 6.2548 -3.7635 0.6136 20 6 5.7287 -2.3877 0.2065 21 1 -0.3633 -0.0946 -1.0233 22 1 -0.3634 -0.8389 0.5935 23 1 -0.3634 0.9334 0.4298 24 1 1.5771 4.3149 -0.5245 25 1 4.0858 -0.2679 0.1866 26 1 1.5462 -4.4164 -0.1832 27 1 4.0294 -5.3931 0.9837 28 1 3.6708 -5.5638 -0.7477 29 1 6.1280 -5.7758 -0.1584 30 1 5.7674 -4.5036 -1.3552 31 1 5.9683 -3.9751 1.6438 32 1 7.3409 -3.7849 0.5237 33 1 6.1517 -2.1114 -0.7592 34 1 6.0295 -1.6518 0.9521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260481089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = 35.971395 kcal Electronic energy + Delta-G solvation = -16138.510218 eV Core-core repulsion = 13649.927805 eV Total energy + Delta-G solvation = -2488.582413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76336 -37.15467 -35.24382 -32.22349 -31.89772 -30.14463 -28.46663 -26.37520 -24.39133 -23.32926 -21.77867 -21.41018 -18.85400 -17.33180 -16.38694 -15.80881 -14.90397 -14.79590 -14.25142 -13.93204 -13.75097 -13.54697 -12.89231 -12.75340 -12.60544 -12.28802 -11.98311 -11.70536 -11.61662 -11.40979 -10.67213 -10.62929 -10.57777 -10.37311 -10.08793 -9.98769 -9.39714 -8.63169 -8.52147 -8.40146 -6.81859 -6.53285 -3.88798 2.23876 2.32090 3.06998 3.21911 3.26910 4.07867 4.34178 4.62886 5.04758 5.06453 5.09148 5.12265 5.43601 5.53722 5.69460 5.85083 5.87423 5.91271 6.04427 6.09504 6.18370 6.21301 6.22043 6.28827 6.42954 6.46895 6.52629 6.57224 6.77515 6.98224 7.26957 7.45372 7.65148 8.00895 8.45558 8.83538 9.15965 9.55196 10.56807 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.041084 B = 0.007256 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.360685 B = 3857.710342 C = 4319.057365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.450 5.450 3 C -0.315 4.315 4 H 0.111 0.889 5 C 0.054 3.946 6 N -0.862 5.862 7 Si 0.891 3.109 8 H -0.274 1.274 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.375 3.625 12 C -0.242 4.242 13 C 0.004 3.996 14 C -0.248 4.248 15 C 0.153 3.847 16 N -0.569 5.569 17 C -0.052 4.052 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.079 4.079 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.277 0.723 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 -11.983 0.001 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.144 5.144 3 C -0.442 4.442 4 H 0.128 0.872 5 C -0.152 4.152 6 N -0.496 5.496 7 Si 0.718 3.282 8 H -0.200 1.200 9 H -0.218 1.218 10 H -0.193 1.193 11 C 0.138 3.862 12 C -0.268 4.268 13 C -0.003 4.003 14 C -0.256 4.256 15 C -0.010 4.010 16 N -0.288 5.288 17 C -0.090 4.090 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.116 4.116 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.929 -11.354 -0.062 11.726 hybrid contribution 0.079 0.177 -0.637 0.666 sum 3.008 -11.177 -0.699 11.596 Atomic orbital electron populations 1.21810 0.82063 1.02286 1.00324 1.42457 1.03449 1.02225 1.66236 1.19120 1.02966 0.82996 1.39144 0.87171 1.25248 0.98247 0.94623 0.97102 1.69809 1.42117 0.97635 1.40070 0.86926 0.81835 0.77436 0.81978 1.19972 1.21798 1.19312 1.18358 0.88374 0.85775 0.93738 1.21219 0.93537 0.98081 1.14011 1.19350 0.94537 0.92142 0.94290 1.19692 0.94552 0.94429 1.16934 1.22058 0.91050 0.94187 0.93671 1.67068 1.40595 0.97619 1.23529 1.20021 0.94440 0.94055 1.00487 1.21517 0.95910 0.98306 0.99720 1.21509 0.99161 0.94920 0.99686 1.20389 0.92023 0.97410 1.01815 0.94428 0.91435 0.91047 0.91312 0.85378 0.84790 0.92471 0.92286 0.92373 0.92009 0.91919 0.92160 0.90901 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.78 7.97 59.85 0.48 2.26 16 2 N -0.45 -11.36 2.89 -122.47 -0.35 -11.71 16 3 C -0.31 -8.54 9.41 -15.07 -0.14 -8.69 16 4 H 0.11 3.12 6.32 -52.48 -0.33 2.79 16 5 C 0.05 1.47 5.19 -17.45 -0.09 1.38 16 6 N -0.86 -24.17 13.97 55.49 0.77 -23.40 16 7 Si 0.89 21.08 24.05 -169.99 -4.09 16.99 16 8 H -0.27 -6.09 6.44 56.52 0.36 -5.73 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -6.54 6.88 56.52 0.39 -6.15 16 11 C 0.37 8.97 7.33 -155.11 -1.14 7.83 16 12 C -0.24 -5.36 8.94 -39.08 -0.35 -5.71 16 13 C 0.00 0.08 5.74 -104.65 -0.60 -0.53 16 14 C -0.25 -4.36 5.74 -104.60 -0.60 -4.96 16 15 C 0.15 2.87 10.79 -17.45 -0.19 2.68 16 16 N -0.57 -12.65 9.26 -12.36 -0.11 -12.76 16 17 C -0.05 -0.70 5.71 -28.09 -0.16 -0.86 16 18 C -0.12 -1.40 5.97 -26.68 -0.16 -1.56 16 19 C -0.12 -1.42 5.98 -26.67 -0.16 -1.58 16 20 C -0.08 -1.19 5.71 -28.14 -0.16 -1.35 16 21 H 0.04 0.84 5.76 -51.93 -0.30 0.54 16 22 H 0.07 1.41 7.63 -51.93 -0.40 1.02 16 23 H 0.07 1.60 5.89 -51.93 -0.31 1.30 16 24 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.13 2.92 6.14 -52.49 -0.32 2.59 16 26 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -28.86 268.20 -7.65 -36.51 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.64 Total: 1.40 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.27 Total: -11.07 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.31 Total: -47.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.09 Total: 16.99 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.86 -7.65 -36.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.479 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds