Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36907 * 119.99781 * 2 1 4 4 H 1.08005 * 120.00040 * 153.92818 * 3 2 1 5 5 C 1.38813 * 120.00112 * 334.20443 * 3 2 1 6 6 N 1.31574 * 119.99829 * 158.15577 * 5 3 2 7 7 Si 1.86801 * 120.00069 * 338.15266 * 5 3 2 8 8 H 1.48500 * 109.47001 * 85.08112 * 7 5 3 9 9 H 1.48500 * 109.47087 * 205.08407 * 7 5 3 10 10 H 1.48501 * 109.46887 * 325.08526 * 7 5 3 11 11 C 1.38833 * 119.99761 * 179.97438 * 2 1 3 12 12 C 1.39100 * 119.80501 * 185.00204 * 11 2 1 13 13 C 1.38719 * 119.27704 * 180.02562 * 12 11 2 14 14 C 1.38124 * 118.57079 * 359.78362 * 13 12 11 15 15 C 1.38671 * 119.07599 * 0.30036 * 14 13 12 16 16 N 1.31699 * 121.15124 * 359.53281 * 15 14 13 17 17 C 1.50501 * 122.45852 * 180.40318 * 14 13 12 18 18 C 1.52792 * 110.45803 * 342.09776 * 17 14 13 19 19 C 1.53306 * 108.51861 * 51.21202 * 18 17 14 20 20 C 1.50360 * 118.63967 * 179.45025 * 13 12 11 21 21 H 1.08998 * 109.46958 * 95.27912 * 1 2 3 22 22 H 1.08998 * 109.47416 * 215.27811 * 1 2 3 23 23 H 1.08997 * 109.47497 * 335.27477 * 1 2 3 24 24 H 0.97001 * 119.99652 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.35710 * 359.97438 * 12 11 2 26 26 H 1.08000 * 119.42600 * 179.82779 * 15 14 13 27 27 H 1.09002 * 109.30357 * 102.39585 * 17 14 13 28 28 H 1.09001 * 109.30768 * 221.79029 * 17 14 13 29 29 H 1.08999 * 109.63081 * 170.92886 * 18 17 14 30 30 H 1.09006 * 109.62350 * 291.50502 * 18 17 14 31 31 H 1.09001 * 109.62971 * 49.81611 * 19 18 17 32 32 H 1.08999 * 109.63639 * 170.21493 * 19 18 17 33 33 H 1.08997 * 109.30118 * 283.07989 * 20 13 12 34 34 H 1.08996 * 109.30429 * 42.46803 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1471 1.2333 0.4111 5 6 1.5592 2.3279 -0.5231 6 7 1.9899 3.5167 -0.1592 7 14 0.1533 2.1773 -1.7439 8 1 -1.1276 2.0270 -1.0076 9 1 0.0984 3.3974 -2.5887 10 1 0.3714 0.9878 -2.6057 11 6 2.1591 -1.2024 0.0005 12 6 3.5461 -1.1999 0.1058 13 6 4.2287 -2.4076 0.1047 14 6 3.5013 -3.5774 0.0029 15 6 2.1203 -3.5054 -0.1005 16 7 1.4962 -2.3457 -0.0940 17 6 4.1509 -4.9350 0.0021 18 6 5.6400 -4.8143 -0.3181 19 6 6.2548 -3.7635 0.6136 20 6 5.7287 -2.3877 0.2065 21 1 -0.3633 -0.0946 -1.0233 22 1 -0.3634 -0.8389 0.5935 23 1 -0.3634 0.9334 0.4298 24 1 1.5771 4.3149 -0.5245 25 1 4.0858 -0.2679 0.1866 26 1 1.5462 -4.4164 -0.1832 27 1 4.0294 -5.3931 0.9837 28 1 3.6708 -5.5638 -0.7477 29 1 6.1280 -5.7758 -0.1584 30 1 5.7674 -4.5036 -1.3552 31 1 5.9683 -3.9751 1.6438 32 1 7.3409 -3.7849 0.5237 33 1 6.1517 -2.1114 -0.7592 34 1 6.0295 -1.6518 0.9521 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260481089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = 19.510878 kcal Electronic energy + Delta-G solvation = -16139.224000 eV Core-core repulsion = 13649.927805 eV Total energy + Delta-G solvation = -2489.296194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33882 -38.69579 -36.79083 -34.14039 -33.34293 -31.55765 -29.97856 -28.20386 -26.05759 -24.69231 -23.28374 -22.81859 -20.24834 -19.18942 -18.11868 -17.52628 -16.54912 -16.19847 -15.79797 -15.50293 -15.23573 -14.64360 -14.60767 -14.52534 -14.20948 -13.72704 -13.53590 -13.22691 -12.96339 -12.86272 -12.46151 -12.32383 -11.90335 -11.65474 -11.62632 -11.24605 -11.21236 -10.49047 -10.08556 -10.02634 -8.60166 -8.52997 -5.93840 0.60752 0.71884 1.19882 1.31440 1.38839 2.13699 2.57444 2.79477 3.25389 3.80482 3.93125 4.04168 4.13254 4.26747 4.33548 4.40031 4.44788 4.62863 4.69662 4.73276 4.77135 4.91610 4.92769 5.08325 5.14608 5.15473 5.24121 5.31001 5.45280 5.55741 5.60856 5.73237 5.92310 6.13861 6.56932 7.02683 7.22958 7.71617 8.59176 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.041084 B = 0.007256 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.360685 B = 3857.710342 C = 4319.057365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.480 5.480 3 C -0.319 4.319 4 H 0.078 0.922 5 C 0.011 3.989 6 N -0.907 5.907 7 Si 0.948 3.052 8 H -0.249 1.249 9 H -0.287 1.287 10 H -0.280 1.280 11 C 0.356 3.644 12 C -0.269 4.269 13 C 0.002 3.998 14 C -0.228 4.228 15 C 0.141 3.859 16 N -0.582 5.582 17 C -0.055 4.055 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.082 4.082 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.280 0.720 25 H 0.106 0.894 26 H 0.175 0.825 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 -15.579 -0.399 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.178 5.178 3 C -0.447 4.447 4 H 0.096 0.904 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.773 3.227 8 H -0.174 1.174 9 H -0.214 1.214 10 H -0.206 1.206 11 C 0.122 3.878 12 C -0.296 4.296 13 C -0.005 4.005 14 C -0.235 4.235 15 C -0.020 4.020 16 N -0.301 5.301 17 C -0.092 4.092 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.119 4.119 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.124 0.876 26 H 0.192 0.808 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.259 -15.019 -0.452 15.375 hybrid contribution 0.171 0.958 -0.459 1.076 sum 3.430 -14.061 -0.911 14.502 Atomic orbital electron populations 1.21785 0.81016 1.02598 1.00481 1.42392 1.04130 1.01880 1.69395 1.18915 1.02231 0.84427 1.39133 0.90431 1.25831 1.00863 0.94092 0.98364 1.69886 1.44360 0.98301 1.41933 0.86013 0.80286 0.76673 0.79711 1.17363 1.21394 1.20601 1.18655 0.89074 0.86154 0.93949 1.21310 0.93451 0.98909 1.15941 1.19850 0.96746 0.91320 0.92613 1.20329 0.94353 0.96266 1.12535 1.22854 0.92265 0.94346 0.92494 1.67103 1.41254 0.98012 1.23768 1.20185 0.95417 0.91235 1.02375 1.21549 0.94863 0.99652 0.99244 1.21527 1.00724 0.92813 0.99771 1.20500 0.89435 0.99759 1.02245 0.94367 0.90208 0.91422 0.91021 0.87575 0.80802 0.90574 0.90069 0.89208 0.92410 0.91811 0.89635 0.90294 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.84 7.97 127.77 1.02 4.86 16 2 N -0.48 -25.02 2.89 -541.38 -1.56 -26.58 16 3 C -0.32 -18.30 9.41 84.04 0.79 -17.51 16 4 H 0.08 4.79 6.32 -2.91 -0.02 4.77 16 5 C 0.01 0.60 5.19 84.87 0.44 1.05 16 6 N -0.91 -53.22 13.97 21.65 0.30 -52.92 16 7 Si 0.95 44.45 24.05 68.60 1.65 46.10 16 8 H -0.25 -10.59 6.44 99.48 0.64 -9.94 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.28 -13.55 6.88 99.48 0.68 -12.87 16 11 C 0.36 17.40 7.33 133.08 0.98 18.37 16 12 C -0.27 -12.33 8.94 22.59 0.20 -12.13 16 13 C 0.00 0.08 5.74 -19.88 -0.11 -0.04 16 14 C -0.23 -7.30 5.74 -19.85 -0.11 -7.42 16 15 C 0.14 4.91 10.79 84.82 0.91 5.82 16 16 N -0.58 -25.32 9.26 -193.03 -1.79 -27.11 16 17 C -0.05 -1.18 5.71 29.72 0.17 -1.01 16 18 C -0.12 -2.18 5.97 30.63 0.18 -1.99 16 19 C -0.11 -2.29 5.98 30.63 0.18 -2.11 16 20 C -0.08 -2.33 5.71 29.68 0.17 -2.16 16 21 H 0.04 1.70 5.76 -2.39 -0.01 1.69 16 22 H 0.08 3.33 7.63 -2.39 -0.02 3.31 16 23 H 0.07 3.06 5.89 -2.39 -0.01 3.04 16 24 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.11 5.23 6.14 -2.91 -0.02 5.22 16 26 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 31 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.33 268.20 4.42 -60.92 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.00 Total: 13.88 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.82 Total: -14.27 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.05 Total: -106.61 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.65 Total: 46.10 kcal Total: -65.33 4.42 -60.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.426 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds