Wall clock time and date at job start Mon Mar 30 2020 03:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86804 * 119.99837 * 2 1 4 4 H 1.48493 * 109.46955 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47192 * 29.99909 * 3 2 1 6 6 H 1.48500 * 109.46908 * 149.99651 * 3 2 1 7 7 C 1.39591 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00123 * 199.99506 * 7 2 1 9 9 N 1.36249 * 119.99605 * 19.99757 * 7 2 1 10 10 C 1.34396 * 124.31211 * 33.58838 * 9 7 2 11 11 O 1.21509 * 126.15052 * 359.96031 * 10 9 7 12 12 C 1.49222 * 107.70094 * 179.97438 * 10 9 7 13 13 O 1.21442 * 127.53265 * 179.97438 * 12 10 9 14 14 C 1.47847 * 104.94161 * 0.02562 * 12 10 9 15 15 C 1.39167 * 133.04657 * 180.02562 * 14 12 10 16 16 C 1.38747 * 119.66232 * 179.97438 * 15 14 12 17 17 O 1.35924 * 120.03604 * 179.72234 * 16 15 14 18 18 C 1.38818 * 119.92529 * 359.97438 * 16 15 14 19 19 C 1.38307 * 120.59072 * 359.97438 * 18 16 15 20 20 C 1.38786 * 120.25837 * 0.02562 * 19 18 16 21 21 H 0.97004 * 120.00520 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.17258 * 359.97438 * 15 14 12 23 23 H 0.96703 * 114.00206 * 89.99475 * 17 16 15 24 24 H 1.08000 * 119.70661 * 180.02562 * 18 16 15 25 25 H 1.07994 * 119.86761 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4914 2.0464 -1.4000 5 1 1.4413 2.6527 0.7000 6 1 3.5414 1.4402 0.7001 7 6 2.0079 -1.2089 0.0005 8 1 3.0391 -1.2369 0.3204 9 7 1.3883 -2.3534 -0.4025 10 6 0.4489 -2.4088 -1.3620 11 8 0.0196 -1.4680 -2.0000 12 6 0.0276 -3.8334 -1.5028 13 8 -0.8014 -4.2878 -2.2651 14 6 0.8388 -4.5706 -0.5108 15 6 0.9143 -5.9140 -0.1551 16 6 1.7961 -6.3125 0.8392 17 8 1.8719 -7.6218 1.1965 18 6 2.5970 -5.3719 1.4723 19 6 2.5258 -4.0361 1.1210 20 6 1.6495 -3.6197 0.1286 21 1 -0.4851 0.8400 -0.0004 22 1 0.2897 -6.6425 -0.6505 23 1 2.5212 -8.1304 0.6915 24 1 3.2825 -5.6861 2.2455 25 1 3.1540 -3.3142 1.6214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543906.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:23 Heat of formation + Delta-G solvation = -76.540304 kcal Electronic energy + Delta-G solvation = -15717.194174 eV Core-core repulsion = 12854.348037 eV Total energy + Delta-G solvation = -2862.846137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.59329 -39.96705 -39.34114 -37.96561 -36.02469 -34.50061 -32.42154 -30.05851 -28.26311 -26.18673 -23.33842 -22.74999 -21.81900 -19.54041 -19.30434 -18.23227 -17.42973 -17.06853 -16.64605 -16.52443 -15.81495 -15.74217 -15.46019 -14.93282 -14.74914 -14.00380 -13.68361 -13.50451 -13.12098 -12.97700 -12.77387 -12.60531 -12.10334 -11.62244 -11.50427 -10.68638 -10.13775 -10.12827 -8.98046 -8.51140 -6.32077 -0.91378 0.24123 0.85006 1.38016 1.45948 1.54599 1.97688 2.32538 2.40642 2.63574 2.84186 3.03664 3.44607 3.57332 3.75444 4.16566 4.38142 4.51318 4.93593 5.04262 5.18248 5.20410 5.34854 5.55379 5.77371 5.86471 6.35159 6.65336 6.98256 7.02376 7.61278 8.52779 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.009194 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.938587 B = 3044.793469 C = 3774.305335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.005 3.995 3 Si 1.000 3.000 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.236 1.236 7 C -0.383 4.383 8 H 0.125 0.875 9 N -0.376 5.376 10 C 0.408 3.592 11 O -0.504 6.504 12 C 0.392 3.608 13 O -0.431 6.431 14 C -0.260 4.260 15 C -0.033 4.033 16 C 0.056 3.944 17 O -0.494 6.494 18 C -0.049 4.049 19 C -0.139 4.139 20 C 0.173 3.827 21 H 0.276 0.724 22 H 0.148 0.852 23 H 0.409 0.591 24 H 0.178 0.822 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -10.592 5.137 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.205 4.205 3 Si 0.822 3.178 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.159 1.159 7 C -0.508 4.508 8 H 0.143 0.857 9 N -0.085 5.085 10 C 0.197 3.803 11 O -0.382 6.382 12 C 0.267 3.733 13 O -0.305 6.305 14 C -0.265 4.265 15 C -0.052 4.052 16 C 0.010 3.990 17 O -0.306 6.306 18 C -0.068 4.068 19 C -0.160 4.160 20 C 0.074 3.926 21 H 0.085 0.915 22 H 0.165 0.835 23 H 0.268 0.732 24 H 0.195 0.805 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.849 -9.923 4.767 13.520 hybrid contribution -0.006 1.025 -0.665 1.222 sum 7.843 -8.898 4.102 12.550 Atomic orbital electron populations 1.69863 1.09081 1.29850 1.39926 1.26613 0.95703 1.04241 0.93931 0.84852 0.79119 0.75535 0.78333 1.20896 1.20371 1.15873 1.19929 0.97557 0.83976 1.49359 0.85713 1.41207 1.33630 1.05771 1.27891 1.20787 0.85945 0.90310 0.83301 1.90578 1.57444 1.43180 1.46997 1.22903 0.79411 0.90687 0.80346 1.90441 1.27594 1.77209 1.35212 1.20260 1.05451 0.95603 1.05145 1.21108 0.97068 0.92393 0.94598 1.17988 0.98689 0.85434 0.96849 1.84846 1.65064 1.17081 1.63657 1.21724 0.96565 0.90450 0.98011 1.20498 1.00623 0.97196 0.97725 1.19454 0.94731 0.84480 0.93886 0.91466 0.83473 0.73199 0.80490 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.50 11.22 21.76 0.24 -50.26 15 2 C 0.00 0.24 4.78 85.14 0.41 0.65 15 3 Si 1.00 41.14 29.60 68.60 2.03 43.17 15 4 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.24 -8.46 7.11 99.48 0.71 -7.75 15 7 C -0.38 -19.76 9.60 84.33 0.81 -18.95 15 8 H 0.13 5.68 7.92 -2.91 -0.02 5.65 15 9 N -0.38 -19.36 2.79 -459.91 -1.28 -20.64 15 10 C 0.41 23.02 7.40 87.26 0.65 23.67 15 11 O -0.50 -32.27 15.35 -3.73 -0.06 -32.32 15 12 C 0.39 19.10 7.95 27.77 0.22 19.33 15 13 O -0.43 -21.60 18.04 -3.52 -0.06 -21.67 15 14 C -0.26 -10.33 6.33 -19.99 -0.13 -10.45 15 15 C -0.03 -0.98 10.05 22.61 0.23 -0.76 15 16 C 0.06 1.36 6.71 22.53 0.15 1.51 15 17 O -0.49 -9.06 13.50 -92.70 -1.25 -10.31 15 18 C -0.05 -1.11 9.96 22.43 0.22 -0.89 15 19 C -0.14 -4.28 9.82 22.42 0.22 -4.06 15 20 C 0.17 7.14 6.69 38.52 0.26 7.39 15 21 H 0.28 15.43 8.30 -92.71 -0.77 14.66 15 22 H 0.15 3.93 8.06 -2.91 -0.02 3.90 15 23 H 0.41 3.11 9.06 -74.06 -0.67 2.44 15 24 H 0.18 2.57 8.06 -2.91 -0.02 2.54 15 25 H 0.15 4.17 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -74.07 240.56 3.24 -70.83 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 0.59 Total: 3.77 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 3.04 Total: 17.43 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.04 Total: -70.90 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -1.37 Total: -64.30 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -74.07 3.24 -70.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543906.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.708 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds