Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00279 * 2 1 4 4 C 1.50699 * 109.47322 * 270.00385 * 3 2 1 5 5 H 1.08001 * 119.99599 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00224 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99785 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47308 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46847 * 120.00080 * 8 6 4 11 11 H 1.48499 * 109.47027 * 239.99811 * 8 6 4 12 12 C 1.39004 * 119.99476 * 180.02562 * 2 1 3 13 13 C 1.39163 * 119.74163 * 5.02226 * 12 2 1 14 14 C 1.38252 * 119.04554 * 179.97438 * 13 12 2 15 15 C 1.38746 * 118.69225 * 0.02562 * 14 13 12 16 16 C 1.38153 * 119.18458 * 359.97438 * 15 14 13 17 17 N 1.31940 * 120.87033 * 0.02562 * 16 15 14 18 18 C 1.51218 * 109.62575 * 179.97438 * 15 14 13 19 19 C 1.54383 * 105.21804 * 17.11795 * 18 15 14 20 20 C 1.51069 * 131.47021 * 180.02562 * 14 13 12 21 21 H 1.09000 * 109.46621 * 270.00218 * 1 2 3 22 22 H 1.08998 * 109.46735 * 29.99905 * 1 2 3 23 23 H 1.08996 * 109.47103 * 150.00102 * 1 2 3 24 24 H 1.09003 * 109.47447 * 29.99939 * 3 2 1 25 25 H 1.08996 * 109.47318 * 150.00133 * 3 2 1 26 26 H 0.97003 * 119.99786 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.47337 * 359.97438 * 13 12 2 28 28 H 1.08000 * 119.56653 * 180.02562 * 16 15 14 29 29 H 1.09008 * 110.29094 * 136.05184 * 18 15 14 30 30 H 1.09002 * 110.29560 * 258.08010 * 18 15 14 31 31 H 1.08993 * 110.80740 * 92.00705 * 19 18 15 32 32 H 1.09000 * 110.80159 * 215.31967 * 19 18 15 33 33 H 1.09003 * 110.30315 * 281.82986 * 20 14 13 34 34 H 1.09000 * 110.30386 * 43.98218 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5544 3.6174 -0.6731 8 14 3.4388 3.4163 -3.4340 9 1 2.8617 2.4158 -4.3673 10 1 2.8018 4.7372 -3.6675 11 1 4.9015 3.5239 -3.6670 12 6 2.1600 -1.2039 -0.0005 13 6 1.4626 -2.4035 -0.1069 14 6 2.1683 -3.5924 -0.1065 15 6 3.5508 -3.5464 0.0008 16 6 4.1781 -2.3197 0.1030 17 7 3.4802 -1.2001 0.1001 18 6 4.1088 -4.9517 -0.0191 19 6 2.9728 -5.8308 -0.5847 20 6 1.7092 -5.0282 -0.2058 21 1 -0.3632 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 4.0319 4.4429 -0.8504 27 1 0.3857 -2.4056 -0.1885 28 1 5.2540 -2.2767 0.1864 29 1 4.9840 -5.0018 -0.6670 30 1 4.3681 -5.2699 0.9907 31 1 3.0601 -5.9272 -1.6669 32 1 2.9690 -6.8116 -0.1093 33 1 1.3194 -5.3679 0.7538 34 1 0.9496 -5.1297 -0.9808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = 39.383659 kcal Electronic energy + Delta-G solvation = -15848.637042 eV Core-core repulsion = 13360.202596 eV Total energy + Delta-G solvation = -2488.434446 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10724 -37.06347 -34.88962 -32.62968 -30.99730 -29.15932 -27.91935 -27.07927 -24.91514 -22.60763 -22.41971 -20.61882 -19.54497 -16.56289 -16.23261 -16.10578 -15.39706 -14.69093 -14.39067 -13.98295 -13.92276 -13.13779 -12.81523 -12.60679 -12.48155 -12.11905 -11.78516 -11.48777 -11.16819 -11.11402 -11.05763 -10.82823 -10.73790 -10.51466 -10.08508 -9.69961 -8.89037 -8.80490 -8.58427 -8.37250 -6.64628 -5.95950 -4.03637 1.90811 2.05810 3.31239 3.38661 3.43291 3.90673 4.46460 4.55318 4.67707 4.77455 5.05350 5.25544 5.33634 5.40879 5.49675 5.67753 5.76885 5.79014 5.84124 5.89586 5.97025 6.02363 6.12417 6.22469 6.29532 6.41341 6.53468 6.90666 7.06517 7.26064 7.56536 7.89803 8.04195 8.31435 8.37749 8.95660 9.08004 9.60580 11.08084 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.006483 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.316424 B = 4317.973300 C = 4628.428734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.594 5.594 3 C 0.252 3.748 4 C -0.521 4.521 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.421 3.579 13 C -0.249 4.249 14 C -0.019 4.019 15 C -0.245 4.245 16 C 0.167 3.833 17 N -0.521 5.521 18 C -0.060 4.060 19 C -0.119 4.119 20 C -0.080 4.080 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.262 0.738 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 -15.668 1.761 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.302 5.302 3 C 0.133 3.867 4 C -0.560 4.560 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.185 3.815 13 C -0.275 4.275 14 C -0.027 4.027 15 C -0.251 4.251 16 C 0.007 3.993 17 N -0.238 5.238 18 C -0.098 4.098 19 C -0.157 4.157 20 C -0.117 4.117 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.161 0.839 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.012 -14.434 1.872 14.864 hybrid contribution -0.235 -0.248 -1.102 1.153 sum -3.247 -14.682 0.771 15.057 Atomic orbital electron populations 1.21564 0.80521 1.02339 1.00116 1.46992 1.04475 1.04504 1.74251 1.19298 0.92602 0.77669 0.97173 1.21519 1.35967 1.06026 0.92497 0.92689 1.24916 0.95532 0.96426 0.97195 1.69945 1.38655 1.14373 1.30522 0.86489 0.78024 0.78283 0.84893 1.19942 1.21019 1.20906 1.18321 0.88263 0.85963 0.89003 1.20777 1.00290 0.91003 1.15436 1.20364 0.94183 0.94120 0.94023 1.21006 0.95091 0.95708 1.13326 1.21841 0.99140 0.85944 0.92398 1.67432 1.06520 1.29765 1.20052 1.20695 0.97738 0.90794 1.00589 1.22285 0.94451 0.97946 1.01020 1.20982 0.98154 0.90828 1.01759 0.94115 0.90834 0.92484 0.95530 0.93130 0.92877 0.85993 0.83950 0.91560 0.91415 0.91268 0.91044 0.90324 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.28 59.85 0.62 2.36 16 2 N -0.59 -13.43 2.97 -183.10 -0.54 -13.98 16 3 C 0.25 6.75 5.22 -5.20 -0.03 6.73 16 4 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 5 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.42 9.22 7.37 -155.00 -1.14 8.07 16 13 C -0.25 -4.54 9.27 -39.23 -0.36 -4.90 16 14 C -0.02 -0.31 6.19 -104.25 -0.65 -0.96 16 15 C -0.25 -3.97 6.18 -104.21 -0.64 -4.62 16 16 C 0.17 3.12 11.18 -17.54 -0.20 2.93 16 17 N -0.52 -11.90 9.08 -12.40 -0.11 -12.01 16 18 C -0.06 -0.72 6.76 -26.90 -0.18 -0.90 16 19 C -0.12 -1.24 7.08 -25.27 -0.18 -1.41 16 20 C -0.08 -0.95 6.76 -26.96 -0.18 -1.13 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 23 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 24 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.05 1.49 7.30 -51.93 -0.38 1.11 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.12 1.94 6.03 -52.49 -0.32 1.63 16 28 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -32.18 283.98 -8.80 -40.98 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.77 Total: -2.76 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.37 Total: -7.53 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.08 Total: -52.13 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.18 -8.80 -40.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.364 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds