Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00279 * 2 1 4 4 C 1.50699 * 109.47322 * 270.00385 * 3 2 1 5 5 H 1.08001 * 119.99599 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00224 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99785 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47308 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46847 * 120.00080 * 8 6 4 11 11 H 1.48499 * 109.47027 * 239.99811 * 8 6 4 12 12 C 1.39004 * 119.99476 * 180.02562 * 2 1 3 13 13 C 1.39163 * 119.74163 * 5.02226 * 12 2 1 14 14 C 1.38252 * 119.04554 * 179.97438 * 13 12 2 15 15 C 1.38746 * 118.69225 * 0.02562 * 14 13 12 16 16 C 1.38153 * 119.18458 * 359.97438 * 15 14 13 17 17 N 1.31940 * 120.87033 * 0.02562 * 16 15 14 18 18 C 1.51218 * 109.62575 * 179.97438 * 15 14 13 19 19 C 1.54383 * 105.21804 * 17.11795 * 18 15 14 20 20 C 1.51069 * 131.47021 * 180.02562 * 14 13 12 21 21 H 1.09000 * 109.46621 * 270.00218 * 1 2 3 22 22 H 1.08998 * 109.46735 * 29.99905 * 1 2 3 23 23 H 1.08996 * 109.47103 * 150.00102 * 1 2 3 24 24 H 1.09003 * 109.47447 * 29.99939 * 3 2 1 25 25 H 1.08996 * 109.47318 * 150.00133 * 3 2 1 26 26 H 0.97003 * 119.99786 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.47337 * 359.97438 * 13 12 2 28 28 H 1.08000 * 119.56653 * 180.02562 * 16 15 14 29 29 H 1.09008 * 110.29094 * 136.05184 * 18 15 14 30 30 H 1.09002 * 110.29560 * 258.08010 * 18 15 14 31 31 H 1.08993 * 110.80740 * 92.00705 * 19 18 15 32 32 H 1.09000 * 110.80159 * 215.31967 * 19 18 15 33 33 H 1.09003 * 110.30315 * 281.82986 * 20 14 13 34 34 H 1.09000 * 110.30386 * 43.98218 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5544 3.6174 -0.6731 8 14 3.4388 3.4163 -3.4340 9 1 2.8617 2.4158 -4.3673 10 1 2.8018 4.7372 -3.6675 11 1 4.9015 3.5239 -3.6670 12 6 2.1600 -1.2039 -0.0005 13 6 1.4626 -2.4035 -0.1069 14 6 2.1683 -3.5924 -0.1065 15 6 3.5508 -3.5464 0.0008 16 6 4.1781 -2.3197 0.1030 17 7 3.4802 -1.2001 0.1001 18 6 4.1088 -4.9517 -0.0191 19 6 2.9728 -5.8308 -0.5847 20 6 1.7092 -5.0282 -0.2058 21 1 -0.3632 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 4.0319 4.4429 -0.8504 27 1 0.3857 -2.4056 -0.1885 28 1 5.2540 -2.2767 0.1864 29 1 4.9840 -5.0018 -0.6670 30 1 4.3681 -5.2699 0.9907 31 1 3.0601 -5.9272 -1.6669 32 1 2.9690 -6.8116 -0.1093 33 1 1.3194 -5.3679 0.7538 34 1 0.9496 -5.1297 -0.9808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = 20.718729 kcal Electronic energy + Delta-G solvation = -15849.446414 eV Core-core repulsion = 13360.202596 eV Total energy + Delta-G solvation = -2489.243818 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.46798 -38.44873 -36.37761 -34.73863 -32.40379 -30.40022 -29.79155 -28.30318 -26.62553 -24.27131 -23.90379 -21.64687 -21.04110 -18.64904 -17.84015 -17.56828 -16.54643 -16.42379 -15.80853 -15.59208 -15.29799 -14.83391 -14.20585 -13.89960 -13.81055 -13.54642 -13.29495 -13.10561 -12.82018 -12.64869 -12.49096 -12.18290 -12.13909 -11.94568 -11.83434 -11.66941 -10.63413 -10.47591 -10.13062 -10.06260 -8.41983 -7.98881 -6.33966 0.50024 0.67078 1.34447 1.36203 1.48365 2.29436 2.44814 3.08604 3.10165 3.57083 3.76873 3.86627 4.20834 4.28809 4.34669 4.41430 4.50690 4.64962 4.72064 4.82607 4.90338 4.94351 4.99899 5.07585 5.11794 5.26720 5.28945 5.33386 5.45574 5.62231 5.66006 5.91938 6.09403 6.30949 6.64248 6.82112 7.34328 7.55409 8.86879 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.006483 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.316424 B = 4317.973300 C = 4628.428734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.614 5.614 3 C 0.273 3.727 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.387 3.613 13 C -0.248 4.248 14 C -0.025 4.025 15 C -0.235 4.235 16 C 0.139 3.861 17 N -0.575 5.575 18 C -0.061 4.061 19 C -0.112 4.112 20 C -0.077 4.077 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.009 0.991 25 H 0.012 0.988 26 H 0.266 0.734 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -18.532 0.771 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.325 5.325 3 C 0.151 3.849 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.189 4.189 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.152 3.848 13 C -0.273 4.273 14 C -0.033 4.033 15 C -0.241 4.241 16 C -0.019 4.019 17 N -0.293 5.293 18 C -0.099 4.099 19 C -0.149 4.149 20 C -0.114 4.114 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.027 0.973 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.626 -17.353 0.888 17.750 hybrid contribution 0.010 0.502 -0.731 0.887 sum -3.616 -16.851 0.157 17.235 Atomic orbital electron populations 1.21717 0.77975 1.03161 1.01536 1.46865 1.05965 1.03409 1.76290 1.18672 0.91145 0.79531 0.95552 1.21711 1.36262 1.06231 0.93074 0.93813 1.25801 0.95071 0.96385 1.01683 1.70061 1.39177 1.14846 1.32790 0.85408 0.77981 0.78231 0.79387 1.19679 1.19487 1.20421 1.18671 0.88467 0.86745 0.90911 1.20982 1.01389 0.90390 1.14571 1.21014 0.94235 0.95864 0.92177 1.21553 0.95694 0.96833 1.09988 1.22188 0.99883 0.86387 0.93478 1.67305 1.07838 1.32373 1.21745 1.20858 0.98834 0.88064 1.02145 1.22335 0.92330 0.98711 1.01564 1.21130 0.99341 0.87497 1.03439 0.92324 0.91706 0.89870 0.97324 0.96969 0.92481 0.83810 0.82668 0.90471 0.89680 0.90867 0.87860 0.88308 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.50 10.28 127.77 1.31 4.81 16 2 N -0.61 -28.87 2.97 -733.20 -2.18 -31.05 16 3 C 0.27 15.49 5.22 85.63 0.45 15.94 16 4 C -0.53 -32.01 9.39 25.60 0.24 -31.77 16 5 H 0.04 2.66 7.81 -2.91 -0.02 2.63 16 6 C 0.01 0.54 5.46 84.66 0.46 1.00 16 7 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 8 Si 0.97 46.23 29.54 68.60 2.03 48.25 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.39 17.39 7.37 133.07 0.98 18.37 16 13 C -0.25 -8.77 9.27 22.50 0.21 -8.57 16 14 C -0.03 -0.75 6.19 -19.62 -0.12 -0.87 16 15 C -0.24 -7.22 6.18 -19.60 -0.12 -7.35 16 16 C 0.14 5.28 11.18 84.66 0.95 6.23 16 17 N -0.58 -27.45 9.08 -193.16 -1.75 -29.20 16 18 C -0.06 -1.25 6.76 30.48 0.21 -1.04 16 19 C -0.11 -1.76 7.08 31.54 0.22 -1.54 16 20 C -0.08 -1.48 6.76 30.44 0.21 -1.27 16 21 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 23 H 0.08 2.44 5.98 -2.39 -0.01 2.43 16 24 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 25 H 0.01 0.77 7.30 -2.39 -0.02 0.76 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.14 4.28 6.03 -2.91 -0.02 4.26 16 28 H 0.16 5.13 8.06 -2.91 -0.02 5.11 16 29 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.17 283.98 4.45 -68.71 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.08 Total: 6.46 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.99 Total: -6.05 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.65 Total: -117.38 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.17 4.45 -68.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.433 kcal (2) G-P(sol) polarization free energy of solvation -73.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds