Wall clock time and date at job start Mon Mar 30 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31852 * 118.79596 * 2 1 4 4 C 1.32553 * 121.23456 * 179.97438 * 3 2 1 5 5 C 1.38989 * 118.46664 * 0.02562 * 4 3 2 6 6 C 1.40939 * 118.52474 * 0.02562 * 5 4 3 7 7 N 1.32064 * 118.99080 * 359.97438 * 6 5 4 8 8 C 1.48281 * 105.72192 * 180.02562 * 6 5 4 9 9 O 1.21376 * 125.75448 * 180.02562 * 8 6 5 10 10 N 1.34601 * 108.48405 * 0.02562 * 8 6 5 11 11 C 1.37348 * 124.47066 * 180.02562 * 10 8 6 12 12 H 1.07997 * 120.00024 * 214.30937 * 11 10 8 13 13 C 1.38950 * 119.99910 * 34.03650 * 11 10 8 14 14 N 1.31372 * 119.99773 * 20.66310 * 13 11 10 15 15 Si 1.86798 * 119.99919 * 200.66711 * 13 11 10 16 16 H 1.48497 * 109.47532 * 94.65436 * 15 13 11 17 17 H 1.48504 * 109.46855 * 214.65421 * 15 13 11 18 18 H 1.48500 * 109.47114 * 334.65063 * 15 13 11 19 19 C 1.34596 * 111.05955 * 0.26478 * 10 8 6 20 20 O 1.21422 * 125.66416 * 179.69974 * 19 10 8 21 21 H 1.08999 * 109.47804 * 269.98225 * 1 2 3 22 22 H 1.09007 * 109.47351 * 29.98136 * 1 2 3 23 23 H 1.09004 * 109.47308 * 149.98329 * 1 2 3 24 24 H 1.07996 * 120.76199 * 180.02562 * 4 3 2 25 25 H 0.96999 * 119.99811 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1421 1.1555 0.0000 4 6 3.4664 1.2119 0.0005 5 6 4.1803 0.0193 0.0005 6 6 3.4635 -1.1942 -0.0006 7 7 2.1433 -1.1578 -0.0011 8 6 4.4881 -2.2661 0.0003 9 8 4.2661 -3.4593 -0.0007 10 7 5.7057 -1.6924 0.0024 11 6 6.8915 -2.3855 0.0033 12 1 7.7469 -1.9915 0.5319 13 6 6.9890 -3.5964 -0.6713 14 7 6.1307 -3.8897 -1.6217 15 14 8.3403 -4.8070 -0.2267 16 1 7.8190 -5.7925 0.7543 17 1 8.7905 -5.5176 -1.4505 18 1 9.4856 -4.0735 0.3694 19 6 5.6080 -0.3501 0.0088 20 8 6.5404 0.4276 0.0172 21 1 -0.3635 -0.0003 1.0276 22 1 -0.3634 0.8902 -0.5136 23 1 -0.3634 -0.8899 -0.5141 24 1 3.9788 2.1625 0.0009 25 1 6.1985 -4.7352 -2.0923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260579901.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:36 Heat of formation + Delta-G solvation = -7.562211 kcal Electronic energy + Delta-G solvation = -15783.848353 eV Core-core repulsion = 12956.286081 eV Total energy + Delta-G solvation = -2827.562272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.52624 -41.25021 -39.37303 -36.78015 -35.48778 -34.90567 -33.59446 -30.29670 -28.03735 -26.38985 -25.08380 -23.45007 -21.90847 -19.69899 -19.33073 -18.38227 -17.79701 -17.47141 -16.83428 -16.18394 -15.99424 -15.76145 -15.36804 -14.84068 -14.56800 -13.81469 -13.55407 -13.24396 -13.18616 -13.09437 -12.91868 -12.18806 -12.13211 -11.72365 -11.57365 -11.18982 -10.83976 -10.52672 -10.24855 -8.65944 -6.52630 -1.30545 -0.43378 0.88780 1.31907 1.42123 1.51213 1.63884 2.12244 2.21488 2.40679 2.47685 2.79661 2.95485 3.09044 3.27160 3.46780 3.92268 4.29791 4.72208 4.75731 4.82570 5.14474 5.24392 5.44523 5.58891 5.68404 6.34042 6.48668 6.69229 6.87978 7.37203 8.44851 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.008550 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.129273 B = 3274.037086 C = 3807.888170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.333 3.667 3 N -0.503 5.503 4 C 0.238 3.762 5 C -0.269 4.269 6 C 0.155 3.845 7 N -0.494 5.494 8 C 0.532 3.468 9 O -0.462 6.462 10 N -0.410 5.410 11 C -0.393 4.393 12 H 0.112 0.888 13 C 0.015 3.985 14 N -0.860 5.860 15 Si 1.005 2.995 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.249 1.249 19 C 0.549 3.451 20 O -0.505 6.505 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.096 0.904 24 H 0.223 0.777 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 7.383 2.693 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 N -0.217 5.217 4 C 0.073 3.927 5 C -0.277 4.277 6 C 0.001 3.999 7 N -0.211 5.211 8 C 0.319 3.681 9 O -0.333 6.333 10 N -0.139 5.139 11 C -0.517 4.517 12 H 0.130 0.870 13 C -0.194 4.194 14 N -0.492 5.492 15 Si 0.826 3.174 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.172 1.172 19 C 0.339 3.661 20 O -0.382 6.382 21 H 0.132 0.868 22 H 0.133 0.867 23 H 0.114 0.886 24 H 0.240 0.760 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.948 6.957 2.536 11.615 hybrid contribution 1.614 -0.878 -0.127 1.842 sum -7.334 6.079 2.409 9.826 Atomic orbital electron populations 1.20899 0.80959 1.06090 1.06089 1.24712 1.00475 0.81837 0.86099 1.68699 1.08879 1.29045 1.15111 1.23478 0.88362 0.97430 0.83406 1.22456 0.96210 0.98219 1.10863 1.22259 0.91421 0.95077 0.91124 1.67709 1.07155 1.32081 1.14150 1.18265 0.82774 0.87098 0.79997 1.90585 1.83224 1.16270 1.43191 1.42132 1.07092 1.06279 1.58377 1.19814 0.89300 1.05607 1.36973 0.87016 1.26519 1.00762 0.99868 0.92228 1.69983 1.37538 1.24037 1.17682 0.84773 0.77124 0.77141 0.78408 1.19711 1.19420 1.17244 1.18400 0.88093 0.82788 0.76802 1.90604 1.45092 1.54799 1.47708 0.86791 0.86655 0.88572 0.76044 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.30 71.23 0.73 -0.69 15 2 C 0.33 9.64 7.64 138.63 1.06 10.69 15 3 N -0.50 -13.88 10.31 -187.15 -1.93 -15.80 15 4 C 0.24 6.93 11.37 84.76 0.96 7.90 15 5 C -0.27 -10.60 6.47 -20.00 -0.13 -10.73 15 6 C 0.16 6.83 7.64 42.44 0.32 7.15 15 7 N -0.49 -18.83 10.36 -176.47 -1.83 -20.66 15 8 C 0.53 28.43 7.33 86.94 0.64 29.07 15 9 O -0.46 -27.28 15.42 -3.33 -0.05 -27.33 15 10 N -0.41 -22.16 2.70 -589.08 -1.59 -23.75 15 11 C -0.39 -21.98 9.55 84.00 0.80 -21.18 15 12 H 0.11 6.04 7.91 -2.91 -0.02 6.02 15 13 C 0.02 0.83 4.76 84.93 0.40 1.23 15 14 N -0.86 -49.90 11.34 21.66 0.25 -49.65 15 15 Si 1.01 42.20 29.60 68.60 2.03 44.23 15 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 15 19 C 0.55 26.30 7.95 86.71 0.69 26.99 15 20 O -0.50 -25.03 17.75 -3.47 -0.06 -25.09 15 21 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.11 1.46 8.14 -2.38 -0.02 1.44 15 23 H 0.10 1.61 8.14 -2.38 -0.02 1.59 15 24 H 0.22 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.28 15.22 8.31 -92.71 -0.77 14.45 15 Total: -1.00 -71.35 240.52 3.55 -67.80 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.25 Total: -0.18 kcal Atomic # 6 Polarization: 44.95 SS G_CDS: 5.48 Total: 50.44 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -5.10 Total: -109.87 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.11 Total: -52.42 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -71.35 3.55 -67.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579901.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.242 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds