Wall clock time and date at job start Mon Mar 30 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48558 * 110.99709 * 2 1 4 4 C 1.54383 * 104.59218 * 200.95875 * 3 2 1 5 5 C 1.54251 * 105.05992 * 23.85393 * 4 3 2 6 6 H 1.09002 * 110.41058 * 118.94238 * 5 4 3 7 7 C 1.50700 * 110.32663 * 241.10169 * 5 4 3 8 8 H 1.07995 * 120.00172 * 110.31682 * 7 5 4 9 9 C 1.37882 * 119.99902 * 290.32903 * 7 5 4 10 10 N 1.31513 * 119.99770 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 119.99849 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47425 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47103 * 119.99796 * 11 9 7 14 14 H 1.48497 * 109.47434 * 239.99777 * 11 9 7 15 15 C 1.48557 * 110.99822 * 244.58139 * 2 1 3 16 16 H 1.08997 * 110.41215 * 40.26446 * 15 2 1 17 17 C 1.50700 * 110.41044 * 277.93237 * 15 2 1 18 18 C 1.38665 * 120.42068 * 333.38916 * 17 15 2 19 19 C 1.38631 * 118.42235 * 179.97438 * 18 17 15 20 20 C 1.38226 * 119.15719 * 0.02562 * 19 18 17 21 21 N 1.31857 * 120.76830 * 359.97438 * 20 19 18 22 22 C 1.31883 * 121.71877 * 359.69916 * 21 20 19 23 23 H 1.08999 * 109.47540 * 59.87630 * 1 2 3 24 24 H 1.09002 * 109.47276 * 179.87445 * 1 2 3 25 25 H 1.09003 * 109.47761 * 299.87359 * 1 2 3 26 26 H 1.09001 * 110.41583 * 319.73923 * 3 2 1 27 27 H 1.09003 * 110.41159 * 82.17891 * 3 2 1 28 28 H 1.09006 * 110.32030 * 142.75118 * 4 3 2 29 29 H 1.08994 * 110.32418 * 264.95608 * 4 3 2 30 30 H 0.97001 * 119.99534 * 180.02562 * 10 9 7 31 31 H 1.07999 * 120.79144 * 359.97438 * 18 17 15 32 32 H 1.08000 * 120.42513 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.61577 * 180.02562 * 20 19 18 34 34 H 1.08010 * 119.61431 * 180.31264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4432 -0.0538 -1.3584 6 1 3.6943 0.1538 -2.3986 7 6 4.4180 -1.0429 -0.7732 8 1 4.0545 -1.9343 -0.2837 9 6 5.7740 -0.8097 -0.8624 10 7 6.2167 0.2757 -1.4586 11 14 6.9822 -2.0353 -0.1363 12 1 6.2354 -3.1637 0.4754 13 1 7.8686 -2.5520 -1.2099 14 1 7.8034 -1.3645 0.9034 15 6 2.0013 -0.5953 -1.2527 16 1 1.4098 -0.2712 -2.1089 17 6 2.0077 -2.0993 -1.1585 18 6 2.0988 -2.7252 0.0756 19 6 2.1006 -4.1110 0.1141 20 6 2.0125 -4.8177 -1.0706 21 7 1.9272 -4.1889 -2.2264 22 6 1.9164 -2.8722 -2.3003 23 1 -0.3634 0.5157 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3635 0.5119 0.8911 26 1 1.4098 2.0212 -0.6602 27 1 2.0077 1.7917 1.0121 28 1 3.6936 2.0997 -1.1699 29 1 4.1482 1.1749 0.2934 30 1 7.1707 0.4396 -1.5217 31 1 2.1668 -2.1468 0.9851 32 1 2.1706 -4.6318 1.0576 33 1 2.0128 -5.8976 -1.0491 34 1 1.8402 -2.3924 -3.2650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260590990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:09 Heat of formation + Delta-G solvation = 44.211229 kcal Electronic energy + Delta-G solvation = -16683.809772 eV Core-core repulsion = 14195.584665 eV Total energy + Delta-G solvation = -2488.225107 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79875 -37.87951 -33.18196 -32.05947 -31.11568 -30.60304 -27.35418 -25.61494 -23.92125 -22.80291 -22.33016 -19.94371 -19.24614 -16.84814 -16.13993 -15.50928 -15.01233 -14.85656 -14.40286 -13.79419 -13.44701 -13.20411 -12.83809 -12.56854 -12.22184 -11.87574 -11.68975 -11.31433 -11.14540 -10.85406 -10.77264 -10.58109 -10.35983 -9.85982 -9.44622 -9.08098 -8.81115 -8.57576 -8.41365 -8.04502 -7.91803 -6.00795 -4.00438 1.82414 2.05645 3.31120 3.39623 3.44443 4.46395 4.47985 4.60600 5.06192 5.31949 5.46831 5.48277 5.61867 5.66963 5.75374 5.82943 5.86917 5.94655 6.08578 6.14961 6.21780 6.33405 6.36130 6.60212 6.79900 6.89961 7.03187 7.12784 7.34162 7.38615 7.55022 7.69410 7.85821 7.98354 8.43525 8.61087 9.01681 9.63224 11.09668 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.013829 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.287027 B = 2024.209010 C = 3086.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.504 5.504 3 C 0.032 3.968 4 C -0.098 4.098 5 C 0.057 3.943 6 H 0.040 0.960 7 C -0.501 4.501 8 H 0.069 0.931 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.884 3.116 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.102 3.898 16 H 0.042 0.958 17 C -0.063 4.063 18 C -0.040 4.040 19 C -0.185 4.185 20 C 0.072 3.928 21 N -0.491 5.491 22 C 0.089 3.911 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -2.016 2.598 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.227 5.227 3 C -0.095 4.095 4 C -0.137 4.137 5 C 0.038 3.962 6 H 0.058 0.942 7 C -0.539 4.539 8 H 0.087 0.913 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.712 3.288 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.007 4.007 16 H 0.060 0.940 17 C -0.066 4.066 18 C -0.067 4.067 19 C -0.205 4.205 20 C -0.086 4.086 21 N -0.200 5.200 22 C -0.068 4.068 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.082 -2.711 2.258 9.743 hybrid contribution 0.671 0.389 0.501 0.923 sum -8.411 -2.322 2.759 9.151 Atomic orbital electron populations 1.22490 0.89831 1.01296 0.99872 1.65162 1.06095 1.15809 1.35638 1.23168 0.97808 0.88726 0.99840 1.22349 0.92452 0.98701 1.00205 1.19427 0.87744 0.92370 0.96609 0.94241 1.21395 0.90167 1.06383 1.35963 0.91263 1.24943 0.98431 0.95213 0.95367 1.69975 1.13876 1.25742 1.43540 0.86649 0.81480 0.81736 0.78940 1.19714 1.21218 1.21163 1.21772 0.99421 0.89886 0.89616 0.94002 1.20445 0.96215 0.96120 0.93788 1.21402 0.92986 0.93378 0.98886 1.22040 1.03789 0.95340 0.99360 1.22441 0.98337 0.99621 0.88164 1.67554 1.12949 1.10709 1.28784 1.22368 0.97331 0.89125 0.97964 0.96121 0.92049 0.92034 0.95357 0.91456 0.93659 0.91173 0.93235 0.84236 0.85952 0.84064 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.41 60.06 0.57 0.78 16 2 N -0.50 -9.14 4.26 -231.72 -0.99 -10.13 16 3 C 0.03 0.58 6.49 -2.18 -0.01 0.57 16 4 C -0.10 -2.16 6.14 -25.35 -0.16 -2.32 16 5 C 0.06 1.36 2.76 -90.39 -0.25 1.11 16 6 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.50 -13.11 7.58 -34.44 -0.26 -13.37 16 8 H 0.07 1.82 4.50 -52.49 -0.24 1.58 16 9 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 10 N -0.89 -25.27 12.91 55.43 0.72 -24.55 16 11 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.10 2.02 2.41 -67.22 -0.16 1.85 16 16 H 0.04 0.79 7.88 -51.93 -0.41 0.38 16 17 C -0.06 -1.25 3.59 -104.48 -0.37 -1.62 16 18 C -0.04 -0.76 7.28 -39.28 -0.29 -1.05 16 19 C -0.19 -3.14 10.11 -39.44 -0.40 -3.54 16 20 C 0.07 1.23 11.18 -17.55 -0.20 1.04 16 21 N -0.49 -9.43 10.36 -13.25 -0.14 -9.57 16 22 C 0.09 1.71 10.88 -17.55 -0.19 1.52 16 23 H 0.02 0.29 7.97 -51.93 -0.41 -0.12 16 24 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.47 7.97 -51.93 -0.41 0.06 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.71 7.63 -51.93 -0.40 1.31 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.14 2.67 7.44 -52.49 -0.39 2.28 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.14 2.53 8.06 -52.48 -0.42 2.10 16 LS Contribution 278.03 15.07 4.19 4.19 Total: -1.00 -28.65 278.03 -7.83 -36.48 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.77 Total: 0.46 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.82 Total: -13.45 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.41 Total: -44.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.65 -7.83 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260590990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.691 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds