Wall clock time and date at job start Mon Mar 30 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48558 * 110.99709 * 2 1 4 4 C 1.54383 * 104.59218 * 200.95875 * 3 2 1 5 5 C 1.54251 * 105.05992 * 23.85393 * 4 3 2 6 6 H 1.09002 * 110.41058 * 118.94238 * 5 4 3 7 7 C 1.50700 * 110.32663 * 241.10169 * 5 4 3 8 8 H 1.07995 * 120.00172 * 110.31682 * 7 5 4 9 9 C 1.37882 * 119.99902 * 290.32903 * 7 5 4 10 10 N 1.31513 * 119.99770 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 119.99849 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47425 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47103 * 119.99796 * 11 9 7 14 14 H 1.48497 * 109.47434 * 239.99777 * 11 9 7 15 15 C 1.48557 * 110.99822 * 244.58139 * 2 1 3 16 16 H 1.08997 * 110.41215 * 40.26446 * 15 2 1 17 17 C 1.50700 * 110.41044 * 277.93237 * 15 2 1 18 18 C 1.38665 * 120.42068 * 333.38916 * 17 15 2 19 19 C 1.38631 * 118.42235 * 179.97438 * 18 17 15 20 20 C 1.38226 * 119.15719 * 0.02562 * 19 18 17 21 21 N 1.31857 * 120.76830 * 359.97438 * 20 19 18 22 22 C 1.31883 * 121.71877 * 359.69916 * 21 20 19 23 23 H 1.08999 * 109.47540 * 59.87630 * 1 2 3 24 24 H 1.09002 * 109.47276 * 179.87445 * 1 2 3 25 25 H 1.09003 * 109.47761 * 299.87359 * 1 2 3 26 26 H 1.09001 * 110.41583 * 319.73923 * 3 2 1 27 27 H 1.09003 * 110.41159 * 82.17891 * 3 2 1 28 28 H 1.09006 * 110.32030 * 142.75118 * 4 3 2 29 29 H 1.08994 * 110.32418 * 264.95608 * 4 3 2 30 30 H 0.97001 * 119.99534 * 180.02562 * 10 9 7 31 31 H 1.07999 * 120.79144 * 359.97438 * 18 17 15 32 32 H 1.08000 * 120.42513 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.61577 * 180.02562 * 20 19 18 34 34 H 1.08010 * 119.61431 * 180.31264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4432 -0.0538 -1.3584 6 1 3.6943 0.1538 -2.3986 7 6 4.4180 -1.0429 -0.7732 8 1 4.0545 -1.9343 -0.2837 9 6 5.7740 -0.8097 -0.8624 10 7 6.2167 0.2757 -1.4586 11 14 6.9822 -2.0353 -0.1363 12 1 6.2354 -3.1637 0.4754 13 1 7.8686 -2.5520 -1.2099 14 1 7.8034 -1.3645 0.9034 15 6 2.0013 -0.5953 -1.2527 16 1 1.4098 -0.2712 -2.1089 17 6 2.0077 -2.0993 -1.1585 18 6 2.0988 -2.7252 0.0756 19 6 2.1006 -4.1110 0.1141 20 6 2.0125 -4.8177 -1.0706 21 7 1.9272 -4.1889 -2.2264 22 6 1.9164 -2.8722 -2.3003 23 1 -0.3634 0.5157 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 -0.3635 0.5119 0.8911 26 1 1.4098 2.0212 -0.6602 27 1 2.0077 1.7917 1.0121 28 1 3.6936 2.0997 -1.1699 29 1 4.1482 1.1749 0.2934 30 1 7.1707 0.4396 -1.5217 31 1 2.1668 -2.1468 0.9851 32 1 2.1706 -4.6318 1.0576 33 1 2.0128 -5.8976 -1.0491 34 1 1.8402 -2.3924 -3.2650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260590990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:08 Heat of formation + Delta-G solvation = 26.762223 kcal Electronic energy + Delta-G solvation = -16684.566417 eV Core-core repulsion = 14195.584665 eV Total energy + Delta-G solvation = -2488.981752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25870 -39.38370 -35.05308 -33.54502 -32.58820 -32.25974 -28.95965 -27.26511 -25.53643 -24.27785 -23.78191 -21.54429 -20.90568 -18.57579 -17.66267 -17.03104 -16.71013 -16.38505 -16.17236 -15.13039 -14.90686 -14.69036 -14.52241 -13.97050 -13.68927 -13.48091 -13.36066 -13.07876 -12.69839 -12.63396 -12.41604 -12.16616 -12.01575 -11.64783 -11.26735 -10.81981 -10.47914 -10.24401 -10.19517 -9.53610 -9.31961 -8.08913 -6.11545 0.42096 0.61829 1.36024 1.39878 1.48891 2.44554 3.05776 3.18334 3.25912 3.72991 4.02739 4.15851 4.18152 4.30775 4.38040 4.43719 4.45957 4.58017 4.72079 4.75723 4.90554 4.92665 5.01260 5.03007 5.10966 5.35168 5.45118 5.54554 5.63381 5.77589 5.87214 6.02303 6.12704 6.30741 6.47347 6.97049 7.20269 7.53734 9.01810 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.013829 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.287027 B = 2024.209010 C = 3086.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.512 5.512 3 C 0.043 3.957 4 C -0.093 4.093 5 C 0.049 3.951 6 H 0.004 0.996 7 C -0.497 4.497 8 H 0.070 0.930 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.935 3.065 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.112 3.888 16 H 0.049 0.951 17 C -0.079 4.079 18 C -0.052 4.052 19 C -0.181 4.181 20 C 0.070 3.930 21 N -0.508 5.508 22 C 0.074 3.926 23 H 0.029 0.971 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.256 0.744 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -3.203 3.798 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.236 5.236 3 C -0.085 4.085 4 C -0.132 4.132 5 C 0.030 3.970 6 H 0.022 0.978 7 C -0.535 4.535 8 H 0.088 0.912 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.762 3.238 12 H -0.191 1.191 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.003 3.997 16 H 0.067 0.933 17 C -0.082 4.082 18 C -0.079 4.079 19 C -0.200 4.200 20 C -0.088 4.088 21 N -0.217 5.217 22 C -0.082 4.082 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.194 0.806 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.472 -3.901 3.465 11.700 hybrid contribution 1.053 0.706 0.125 1.274 sum -9.419 -3.195 3.590 10.575 Atomic orbital electron populations 1.22534 0.87322 1.01984 1.01327 1.65132 1.08436 1.15495 1.34540 1.23075 0.95052 0.89365 1.00977 1.22128 0.94762 0.97528 0.98747 1.19355 0.90076 0.93039 0.94548 0.97759 1.21711 0.90589 1.06517 1.34725 0.91171 1.25605 1.00159 0.96644 0.96248 1.70084 1.13830 1.27313 1.45292 0.85836 0.79692 0.80084 0.78147 1.19129 1.21609 1.20875 1.21525 0.96964 0.90385 0.90854 0.93322 1.20467 0.97428 0.95885 0.94380 1.21500 0.93500 0.94502 0.98350 1.22403 1.02147 0.94596 1.00876 1.23080 0.96758 1.01359 0.87573 1.67595 1.13539 1.10556 1.30054 1.22526 0.97848 0.89565 0.98287 0.95224 0.91800 0.89887 0.93403 0.89743 0.94650 0.94164 0.93543 0.84683 0.82645 0.80568 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.41 127.69 1.20 1.65 16 2 N -0.51 -17.66 4.26 -887.02 -3.78 -21.45 16 3 C 0.04 1.48 6.49 86.45 0.56 2.04 16 4 C -0.09 -4.14 6.14 31.49 0.19 -3.95 16 5 C 0.05 2.35 2.76 -10.65 -0.03 2.32 16 6 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 7 C -0.50 -26.28 7.58 25.60 0.19 -26.08 16 8 H 0.07 3.65 4.50 -2.91 -0.01 3.64 16 9 C 0.01 0.61 5.30 84.66 0.45 1.06 16 10 N -0.92 -53.79 12.91 21.45 0.28 -53.51 16 11 Si 0.93 44.54 29.54 68.60 2.03 46.56 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 C 0.11 4.36 2.41 44.32 0.11 4.47 16 16 H 0.05 1.80 7.88 -2.39 -0.02 1.79 16 17 C -0.08 -3.04 3.59 -19.78 -0.07 -3.11 16 18 C -0.05 -1.88 7.28 22.47 0.16 -1.72 16 19 C -0.18 -5.58 10.11 22.36 0.23 -5.36 16 20 C 0.07 2.18 11.18 84.69 0.95 3.13 16 21 N -0.51 -18.68 10.36 -195.83 -2.03 -20.71 16 22 C 0.07 2.80 10.88 84.67 0.92 3.72 16 23 H 0.03 0.74 7.97 -2.39 -0.02 0.72 16 24 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.47 7.97 -2.39 -0.02 1.46 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.04 2.00 7.63 -2.39 -0.02 1.98 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.14 4.95 7.44 -2.91 -0.02 4.93 16 32 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.15 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -61.65 278.03 2.43 -59.22 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.07 Total: 11.71 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.86 Total: -21.84 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -5.53 Total: -95.66 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.65 2.43 -59.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260590990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.985 kcal (2) G-P(sol) polarization free energy of solvation -61.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds