Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00248 * 2 1 4 4 H 1.48494 * 109.47037 * 240.00284 * 3 2 1 5 5 H 1.48505 * 109.46634 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47437 * 119.99581 * 3 2 1 7 7 C 1.37877 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00369 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47698 * 179.97438 * 9 7 2 11 11 N 1.32009 * 119.56738 * 270.02599 * 10 9 7 12 12 N 1.28747 * 121.34929 * 179.68408 * 11 10 9 13 13 C 1.32218 * 120.38903 * 0.57937 * 12 11 10 14 14 C 1.38715 * 119.12369 * 359.43121 * 13 12 11 15 15 C 1.50692 * 120.63537 * 180.25909 * 14 13 12 16 16 F 1.39905 * 109.46907 * 5.00018 * 15 14 13 17 17 F 1.39900 * 109.47533 * 125.00100 * 15 14 13 18 18 F 1.39897 * 109.46939 * 245.00252 * 15 14 13 19 19 N 1.32021 * 119.56393 * 90.00056 * 10 9 7 20 20 H 0.96996 * 120.00028 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47080 * 59.99896 * 9 7 2 22 22 H 1.09001 * 109.47309 * 300.00677 * 9 7 2 23 23 H 1.08002 * 120.44265 * 179.71351 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6540 -4.1394 -1.1476 12 7 3.4948 -5.1136 -1.1877 13 6 3.9480 -5.6524 -0.0685 14 6 3.5147 -5.1463 1.1482 15 6 4.0137 -5.7307 2.4444 16 9 4.9902 -6.6958 2.1754 17 9 4.5664 -4.7150 3.2318 18 9 2.9479 -6.3240 3.1293 19 7 2.6536 -4.1397 1.1489 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 4.6498 -6.4726 -0.1012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614380.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -81.584116 kcal Electronic energy + Delta-G solvation = -15855.880914 eV Core-core repulsion = 12483.252072 eV Total energy + Delta-G solvation = -3372.628843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.33515 -47.89336 -47.74533 -41.70957 -35.17637 -34.33893 -32.57700 -28.87835 -27.92758 -25.12262 -23.88870 -22.04250 -19.34201 -18.68491 -18.57358 -17.82870 -16.71049 -16.38771 -15.28695 -14.94192 -14.60118 -14.58045 -14.21216 -13.93063 -13.91641 -13.78357 -12.63650 -12.44407 -12.16417 -11.66115 -11.62041 -11.49908 -10.91099 -10.81539 -10.35454 -10.06953 -9.34242 -9.24657 -8.60001 -6.24079 -4.29602 0.28872 0.86340 2.16387 3.25247 3.27365 3.28914 3.31462 3.49979 3.54676 3.89781 4.19368 4.28441 4.30377 4.38662 5.06903 5.16078 5.37899 6.10042 6.80747 7.16718 7.27789 7.66450 7.93782 8.59740 8.68729 9.34282 10.86510 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.034428 B = 0.007125 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.089916 B = 3929.020201 C = 4218.459377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.080 3.920 10 C 0.311 3.689 11 N -0.250 5.250 12 N -0.180 5.180 13 C -0.006 4.006 14 C 0.051 3.949 15 C 0.532 3.468 16 F -0.167 7.167 17 F -0.159 7.159 18 F -0.163 7.163 19 N -0.419 5.419 20 H 0.268 0.732 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -11.253 3.735 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.040 3.960 10 C 0.045 3.955 11 N -0.099 5.099 12 N -0.030 5.030 13 C -0.172 4.172 14 C -0.109 4.109 15 C 0.476 3.524 16 F -0.148 7.148 17 F -0.140 7.140 18 F -0.144 7.144 19 N -0.140 5.140 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.615 -10.691 2.853 12.892 hybrid contribution 0.941 0.381 1.053 1.463 sum 7.556 -10.310 3.907 13.366 Atomic orbital electron populations 1.69909 1.06005 1.27640 1.48842 1.24911 0.95000 0.99339 0.94385 0.86436 0.79494 0.82000 0.78893 1.19941 1.20845 1.19981 1.20663 0.92799 0.88857 1.53460 0.92608 1.18454 0.90790 0.85831 1.00888 1.26226 0.92955 0.93815 0.82457 1.73790 1.05646 1.04060 1.26423 1.73885 1.02451 1.02169 1.24486 1.24726 1.00813 1.01770 0.89925 1.22383 0.97660 0.96426 0.94423 1.17593 0.75556 0.76011 0.83231 1.93199 1.63497 1.64366 1.93786 1.93277 1.85618 1.59436 1.75692 1.93257 1.55981 1.84176 1.80987 1.68737 1.06893 1.05805 1.32572 0.92230 0.92067 0.92312 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 13.29 55.43 0.74 -24.24 14 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 14 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 14 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.52 -14.12 9.09 -34.44 -0.31 -14.44 14 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 14 9 C 0.08 1.99 5.44 -29.04 -0.16 1.83 14 10 C 0.31 6.86 6.90 -156.82 -1.08 5.78 14 11 N -0.25 -5.31 11.48 32.42 0.37 -4.94 14 12 N -0.18 -3.25 11.63 30.62 0.36 -2.89 14 13 C -0.01 -0.09 10.74 -17.21 -0.18 -0.27 14 14 C 0.05 0.84 6.26 -82.15 -0.51 0.32 14 15 C 0.53 7.32 3.51 36.00 0.13 7.44 14 16 F -0.17 -1.87 16.08 2.25 0.04 -1.83 14 17 F -0.16 -2.38 17.30 2.25 0.04 -2.34 14 18 F -0.16 -2.27 17.30 2.25 0.04 -2.24 14 19 N -0.42 -8.50 10.39 -6.85 -0.07 -8.57 14 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 14 21 H 0.06 1.57 8.14 -51.93 -0.42 1.14 14 22 H 0.06 1.51 8.14 -51.93 -0.42 1.09 14 23 H 0.19 1.90 7.27 -52.49 -0.38 1.52 14 LS Contribution 235.33 15.07 3.55 3.55 Total: -1.00 -28.35 235.33 -2.96 -31.31 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: -0.77 Total: -6.18 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.22 Total: 2.40 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 1.39 Total: -40.64 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.35 -2.96 -31.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614380.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.276 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds